Wall clock time and date at job start Tue Mar 31 2020 05:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00313 * 2 1 4 4 H 1.48498 * 109.47110 * 240.00225 * 3 2 1 5 5 H 1.48509 * 109.47005 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47441 * 119.99480 * 3 2 1 7 7 C 1.37878 * 119.99571 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99683 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00411 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47071 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.47253 * 179.97438 * 10 9 7 12 12 C 1.35892 * 117.00307 * 179.97438 * 11 10 9 13 13 C 1.38760 * 120.05758 * 0.02562 * 12 11 10 14 14 C 1.38116 * 119.94726 * 180.02562 * 13 12 11 15 15 C 1.38293 * 120.05644 * 359.97200 * 14 13 12 16 16 C 1.38240 * 120.10809 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.97086 * 179.97438 * 16 15 14 18 18 N 1.46898 * 109.47107 * 89.99718 * 17 16 15 19 19 C 1.47840 * 111.00073 * 285.61267 * 18 17 16 20 20 C 1.54910 * 104.79586 * 213.63916 * 19 18 17 21 21 C 1.55134 * 101.65386 * 37.07033 * 20 19 18 22 22 C 1.47450 * 110.99734 * 164.77227 * 18 17 16 23 23 H 1.09001 * 109.88492 * 242.82256 * 22 18 17 24 24 C 1.50701 * 109.88952 * 3.84795 * 22 18 17 25 25 C 1.34853 * 125.88808 * 240.45056 * 24 22 18 26 26 C 1.40891 * 107.41276 * 179.88648 * 25 24 22 27 27 C 1.34850 * 107.41685 * 0.38011 * 26 25 24 28 28 N 1.36338 * 108.22125 * 359.76587 * 27 26 25 29 29 H 0.97001 * 125.64076 * 180.02562 * 28 27 26 30 30 C 1.38167 * 120.06112 * 0.27188 * 16 15 14 31 31 H 0.97006 * 119.99958 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.46889 * 59.99960 * 9 7 2 33 33 H 1.09001 * 109.47079 * 299.99478 * 9 7 2 34 34 H 1.08999 * 109.47964 * 59.99851 * 10 9 7 35 35 H 1.09001 * 109.47169 * 299.99955 * 10 9 7 36 36 H 1.08002 * 120.02647 * 359.97438 * 13 12 11 37 37 H 1.07997 * 119.97215 * 179.97438 * 14 13 12 38 38 H 1.07993 * 119.94815 * 180.02562 * 15 14 13 39 39 H 1.09005 * 109.46870 * 209.99966 * 17 16 15 40 40 H 1.08997 * 109.46911 * 329.99242 * 17 16 15 41 41 H 1.09002 * 110.37393 * 332.46321 * 19 18 17 42 42 H 1.08996 * 110.37618 * 94.80708 * 19 18 17 43 43 H 1.08997 * 110.98910 * 278.97684 * 20 19 18 44 44 H 1.09004 * 111.02013 * 155.17400 * 20 19 18 45 45 H 1.09008 * 110.70648 * 205.96358 * 21 20 19 46 46 H 1.09006 * 110.71048 * 82.72968 * 21 20 19 47 47 H 1.07995 * 126.29359 * 0.02562 * 25 24 22 48 48 H 1.07998 * 126.29147 * 180.12656 * 26 25 24 49 49 H 1.08001 * 125.88939 * 179.73740 * 27 26 25 50 50 H 1.08000 * 120.03405 * 179.74421 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 8 1.5306 -4.8997 0.0024 12 6 2.2707 -6.0394 0.0030 13 6 3.6565 -5.9682 0.0036 14 6 4.4065 -7.1280 0.0037 15 6 3.7775 -8.3596 0.0038 16 6 2.3970 -8.4332 0.0033 17 6 1.7147 -9.7770 0.0029 18 7 1.4926 -10.2138 1.3877 19 6 2.7563 -10.6609 2.0114 20 6 2.3414 -11.8058 2.9689 21 6 1.2183 -12.5024 2.1565 22 6 0.5236 -11.3238 1.4426 23 1 -0.3602 -11.0171 2.0021 24 6 0.1301 -11.7304 0.0458 25 6 -1.1173 -11.6970 -0.4655 26 6 -1.0404 -12.1559 -1.7953 27 6 0.2497 -12.4602 -2.0433 28 7 0.9730 -12.2011 -0.9169 29 1 1.9292 -12.3300 -0.8171 30 6 1.6422 -7.2760 -0.0030 31 1 -0.4850 0.8401 -0.0004 32 1 0.6246 -2.5571 -0.8896 33 1 0.6240 -2.5568 0.8903 34 1 2.8712 -3.6041 0.8922 35 1 2.8725 -3.6047 -0.8877 36 1 4.1483 -5.0066 0.0031 37 1 5.4850 -7.0731 0.0037 38 1 4.3656 -9.2653 0.0043 39 1 0.7568 -9.6979 -0.5113 40 1 2.3440 -10.5037 -0.5110 41 1 3.4439 -11.0323 1.2515 42 1 3.2128 -9.8447 2.5711 43 1 1.9555 -11.4089 3.9078 44 1 3.1736 -12.4867 3.1478 45 1 0.5226 -13.0144 2.8213 46 1 1.6415 -13.1970 1.4308 47 1 -2.0106 -11.3752 0.0491 48 1 -1.8639 -12.2507 -2.4875 49 1 0.6423 -12.8436 -2.9735 50 1 0.5638 -7.3340 -0.0076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095430506.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:29 Heat of formation + Delta-G solvation = 39.087589 kcal Electronic energy + Delta-G solvation = -28766.907206 eV Core-core repulsion = 24952.948832 eV Total energy + Delta-G solvation = -3813.958374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.86383 -39.82912 -38.86401 -37.11037 -33.44456 -33.15312 -31.23173 -31.11592 -30.86280 -30.04022 -29.04630 -27.17535 -25.83295 -24.81530 -22.52721 -22.00656 -21.62397 -21.33505 -20.64710 -20.38995 -20.04792 -17.92719 -17.28166 -16.34649 -16.14882 -15.81486 -15.62559 -15.54075 -15.25443 -14.89318 -14.53042 -14.09777 -13.90254 -13.81675 -13.61699 -13.35274 -13.13562 -13.01026 -12.74915 -12.50686 -12.43062 -12.30739 -12.22433 -11.67603 -11.56671 -11.42522 -11.31246 -11.27102 -11.19732 -11.06433 -10.84037 -10.70828 -10.40576 -9.83178 -9.63899 -9.29300 -9.11118 -8.85058 -8.58745 -8.42848 -8.15953 -7.80716 -6.08404 -4.13147 1.47462 1.70511 1.97021 2.79580 3.01175 3.29745 3.34018 3.35794 3.66984 3.86569 4.10990 4.23112 4.29912 4.40763 4.42567 4.76341 4.86667 4.89479 4.95358 5.02311 5.06924 5.13682 5.27609 5.27763 5.28620 5.34415 5.41193 5.45402 5.49892 5.51668 5.60289 5.72667 5.75221 5.81285 5.89334 6.01629 6.06088 6.09306 6.13197 6.21436 6.56874 6.60100 6.60353 6.67663 6.75899 6.78451 6.79810 6.90747 7.02440 7.28643 7.53196 7.66786 7.83678 8.10051 8.25964 8.92215 9.50915 11.03159 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.002057 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.840438 B =13611.070130 C =14242.582530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.025 3.975 10 C 0.066 3.934 11 O -0.315 6.315 12 C 0.146 3.854 13 C -0.212 4.212 14 C -0.081 4.081 15 C -0.167 4.167 16 C -0.044 4.044 17 C 0.097 3.903 18 N -0.513 5.513 19 C 0.041 3.959 20 C -0.131 4.131 21 C -0.135 4.135 22 C 0.140 3.860 23 H 0.109 0.891 24 C 0.004 3.996 25 C -0.184 4.184 26 C -0.199 4.199 27 C -0.013 4.013 28 N -0.558 5.558 29 H 0.409 0.591 30 C -0.139 4.139 31 H 0.264 0.736 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.036 0.964 41 H 0.042 0.958 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.136 0.864 48 H 0.135 0.865 49 H 0.162 0.838 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.035 -30.173 1.045 30.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.008 4.008 11 O -0.228 6.228 12 C 0.099 3.901 13 C -0.231 4.231 14 C -0.099 4.099 15 C -0.186 4.186 16 C -0.044 4.044 17 C -0.030 4.030 18 N -0.236 5.236 19 C -0.087 4.087 20 C -0.169 4.169 21 C -0.174 4.174 22 C 0.031 3.969 23 H 0.127 0.873 24 C -0.109 4.109 25 C -0.210 4.210 26 C -0.223 4.223 27 C -0.144 4.144 28 N -0.154 5.154 29 H 0.246 0.754 30 C -0.158 4.158 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.147 0.853 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.111 0.889 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.154 0.846 48 H 0.152 0.848 49 H 0.179 0.821 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.601 -29.594 1.333 29.979 hybrid contribution 1.466 0.345 -0.572 1.611 sum 6.067 -29.249 0.761 29.881 Atomic orbital electron populations 1.69969 1.06093 1.27070 1.49602 1.24990 0.94909 0.99359 0.94928 0.86549 0.79499 0.82624 0.78697 1.20114 1.21105 1.20094 1.20933 0.92986 0.90247 1.52355 0.92453 1.19116 0.94173 0.88985 0.98888 1.23319 0.97063 0.80888 0.99569 1.86179 1.36524 1.13183 1.86925 1.19190 0.90066 0.87525 0.93289 1.21370 0.93242 0.99757 1.08723 1.20813 0.99229 0.91919 0.97920 1.20708 0.93712 0.97178 1.07001 1.19357 0.93002 0.93730 0.98358 1.21359 1.00266 0.92497 0.88917 1.63808 1.09225 1.33349 1.17236 1.23164 0.91258 0.97446 0.96796 1.22750 0.98153 0.96975 0.99047 1.22866 0.98191 0.97182 0.99181 1.21201 0.97012 0.89277 0.89374 0.87277 1.20554 0.90741 1.07158 0.92420 1.20759 0.96081 1.08289 0.95842 1.20917 0.96063 1.08113 0.97244 1.21837 0.92378 1.08646 0.91558 1.42176 1.09644 1.52336 1.11275 0.75438 1.20241 1.00281 0.89116 1.06156 0.92644 0.95396 0.95370 0.93180 0.93211 0.85325 0.86366 0.87212 0.88870 0.94570 0.93942 0.89584 0.90139 0.90762 0.90112 0.91817 0.84641 0.84760 0.82095 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.68 5.34 -27.89 -0.15 0.53 16 10 C 0.07 1.44 4.68 37.15 0.17 1.62 16 11 O -0.32 -6.73 10.14 -19.40 -0.20 -6.92 16 12 C 0.15 2.65 6.69 -39.21 -0.26 2.39 16 13 C -0.21 -3.41 9.04 -39.43 -0.36 -3.77 16 14 C -0.08 -1.07 10.04 -39.61 -0.40 -1.47 16 15 C -0.17 -2.06 9.13 -39.56 -0.36 -2.42 16 16 C -0.04 -0.58 5.19 -104.64 -0.54 -1.12 16 17 C 0.10 1.04 3.69 -4.97 -0.02 1.03 16 18 N -0.51 -5.11 5.11 -226.15 -1.16 -6.27 16 19 C 0.04 0.34 5.87 -2.30 -0.01 0.33 16 20 C -0.13 -0.85 7.08 -24.59 -0.17 -1.02 16 21 C -0.14 -0.88 6.46 -24.91 -0.16 -1.05 16 22 C 0.14 1.18 3.89 -67.87 -0.26 0.92 16 23 H 0.11 0.96 8.11 -51.93 -0.42 0.54 16 24 C 0.00 0.04 3.47 -81.79 -0.28 -0.25 16 25 C -0.18 -1.82 10.73 -39.78 -0.43 -2.24 16 26 C -0.20 -1.84 10.86 -39.78 -0.43 -2.27 16 27 C -0.01 -0.10 11.94 -16.75 -0.20 -0.30 16 28 N -0.56 -4.23 4.46 -9.12 -0.04 -4.27 16 29 H 0.41 2.42 7.85 -40.82 -0.32 2.10 16 30 C -0.14 -2.24 9.64 -39.43 -0.38 -2.62 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 35 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 36 H 0.13 2.04 6.30 -52.49 -0.33 1.71 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.11 1.08 7.87 -52.49 -0.41 0.67 16 39 H 0.09 1.14 6.55 -51.93 -0.34 0.80 16 40 H 0.04 0.34 5.61 -51.93 -0.29 0.04 16 41 H 0.04 0.32 7.35 -51.93 -0.38 -0.06 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 46 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 47 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 48 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 49 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 50 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 399.97 15.07 6.03 6.03 Total: -1.00 -31.49 399.97 -12.19 -43.69 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.88 Total: 2.59 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -4.66 Total: -25.27 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.46 Total: -36.53 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.20 Total: -6.92 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.49 -12.19 -43.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095430506.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.775 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds