Wall clock time and date at job start Tue Mar 31 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99391 * 2 1 4 4 H 1.48499 * 109.47504 * 269.99720 * 3 2 1 5 5 H 1.48496 * 109.47514 * 30.00194 * 3 2 1 6 6 H 1.48508 * 109.46861 * 149.99904 * 3 2 1 7 7 C 1.37872 * 120.00793 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99300 * 0.02562 * 7 2 1 9 9 S 1.76195 * 120.00527 * 180.02562 * 7 2 1 10 10 O 1.42093 * 106.40018 * 66.45759 * 9 7 2 11 11 O 1.42106 * 106.39783 * 293.53913 * 9 7 2 12 12 N 1.65602 * 107.21825 * 180.02562 * 9 7 2 13 13 C 1.46490 * 120.00390 * 64.99740 * 12 9 7 14 14 C 1.53001 * 109.47272 * 164.91247 * 13 12 9 15 15 S 1.81400 * 110.01161 * 61.65774 * 14 13 12 16 16 C 1.76192 * 103.00346 * 63.15491 * 15 14 13 17 17 C 1.38969 * 120.08286 * 3.36491 * 16 15 14 18 18 C 1.38085 * 119.91981 * 179.68036 * 17 16 15 19 19 C 1.38297 * 120.07875 * 0.60952 * 18 17 16 20 20 C 1.38302 * 120.16458 * 359.68578 * 19 18 17 21 21 C 1.38086 * 120.07660 * 359.97438 * 20 19 18 22 22 C 1.54260 * 110.03596 * 300.21434 * 14 13 12 23 23 C 1.54891 * 104.19701 * 217.10657 * 22 14 13 24 24 C 1.54895 * 102.74877 * 37.93536 * 23 22 14 25 25 C 1.53874 * 110.03339 * 183.04135 * 14 13 12 26 26 H 0.96998 * 120.00481 * 0.02562 * 1 2 3 27 27 H 0.97004 * 119.99159 * 244.99809 * 12 9 7 28 28 H 1.09000 * 109.47352 * 284.91888 * 13 12 9 29 29 H 1.09001 * 109.47085 * 44.91650 * 13 12 9 30 30 H 1.08001 * 120.03821 * 359.97438 * 17 16 15 31 31 H 1.08001 * 119.95715 * 180.31719 * 18 17 16 32 32 H 1.08002 * 119.91801 * 179.70444 * 19 18 17 33 33 H 1.07996 * 119.96551 * 180.02562 * 20 19 18 34 34 H 1.07997 * 120.03783 * 180.02562 * 21 20 19 35 35 H 1.09006 * 110.48213 * 335.77985 * 22 14 13 36 36 H 1.08992 * 110.48967 * 98.42325 * 22 14 13 37 37 H 1.09005 * 110.75089 * 279.62822 * 23 22 14 38 38 H 1.08992 * 110.75856 * 156.25280 * 23 22 14 39 39 H 1.08996 * 110.48692 * 203.37842 * 24 23 22 40 40 H 1.09003 * 110.47823 * 80.74150 * 24 23 22 41 41 H 1.09002 * 110.03793 * 238.57717 * 25 14 13 42 42 H 1.09008 * 110.03438 * 0.02562 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1939 0.0005 8 1 1.4647 -2.1292 0.0005 9 16 3.7666 -1.1938 0.0012 10 8 4.1673 -0.6491 1.2509 11 8 4.1683 -0.6496 -1.2486 12 7 4.2569 -2.7756 0.0011 13 6 3.9621 -3.6338 -1.1490 14 6 4.8225 -4.8969 -1.0767 15 16 4.4301 -5.8301 0.4285 16 6 2.7422 -6.2756 0.1900 17 6 2.0961 -5.9476 -0.9959 18 6 0.7751 -6.3042 -1.1819 19 6 0.0914 -6.9758 -0.1848 20 6 0.7293 -7.2984 0.9992 21 6 2.0522 -6.9512 1.1894 22 6 6.3181 -4.5190 -1.0906 23 6 6.9838 -5.6343 -1.9345 24 6 5.9346 -5.8962 -3.0435 25 6 4.5787 -5.7725 -2.3183 26 1 -0.4851 0.8400 -0.0004 27 1 4.7393 -3.1338 0.7626 28 1 2.9080 -3.9109 -1.1348 29 1 4.1838 -3.0954 -2.0704 30 1 2.6279 -5.4187 -1.7729 31 1 0.2739 -6.0542 -2.1053 32 1 -0.9431 -7.2492 -0.3312 33 1 0.1924 -7.8232 1.7755 34 1 2.5498 -7.2038 2.1140 35 1 6.4615 -3.5468 -1.5622 36 1 6.7202 -4.5157 -0.0776 37 1 7.1429 -6.5300 -1.3340 38 1 7.9221 -5.2849 -2.3652 39 1 6.0570 -6.8978 -3.4555 40 1 6.0163 -5.1464 -3.8304 41 1 4.2254 -6.7585 -2.0164 42 1 3.8477 -5.2974 -2.9726 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:04 Heat of formation + Delta-G solvation = -54.673798 kcal Electronic energy + Delta-G solvation = -26187.505615 eV Core-core repulsion = 22578.293413 eV Total energy + Delta-G solvation = -3609.212202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 341.091 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.27247 -38.47214 -35.61736 -34.42181 -34.33317 -33.00998 -31.44788 -30.84897 -29.16193 -28.74623 -26.39535 -24.18443 -22.75221 -22.58372 -20.84210 -20.29818 -18.97610 -17.77985 -17.48469 -16.75908 -16.55454 -15.85314 -15.62631 -15.09360 -14.81803 -14.62592 -14.35201 -13.83963 -13.72245 -13.55947 -13.33733 -13.17475 -12.98621 -12.85577 -12.63406 -12.32157 -11.75379 -11.61383 -11.39919 -11.28158 -11.21941 -11.15960 -10.89866 -10.73765 -10.68885 -10.61524 -10.60859 -10.48458 -9.91333 -9.81370 -9.61437 -9.23042 -9.19782 -8.87423 -8.52770 -7.27684 -6.78577 -5.31949 1.30394 1.45766 1.58649 2.09621 2.41967 3.07715 3.17853 3.27488 3.80650 3.96068 4.15671 4.31205 4.48348 4.60938 4.67891 4.90948 5.00443 5.05279 5.13698 5.22112 5.25491 5.33043 5.40636 5.46781 5.52419 5.60020 5.66040 5.74780 5.80398 5.81751 5.86999 5.93697 6.00469 6.04590 6.06177 6.17871 6.22286 6.34900 6.45303 6.54625 6.58539 6.98299 7.49282 7.75537 8.23874 8.72608 10.33766 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010965 B = 0.005211 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.851554 B = 5372.178922 C = 6960.039354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.154 3.846 3 Si 0.800 3.200 4 H -0.247 1.247 5 H -0.255 1.255 6 H -0.220 1.220 7 C -1.014 5.014 8 H 0.121 0.879 9 S 2.676 3.324 10 O -1.007 7.007 11 O -1.013 7.013 12 N -1.118 6.118 13 C 0.127 3.873 14 C -0.054 4.054 15 S -0.104 6.104 16 C -0.077 4.077 17 C -0.141 4.141 18 C -0.099 4.099 19 C -0.126 4.126 20 C -0.105 4.105 21 C -0.103 4.103 22 C -0.098 4.098 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.121 4.121 26 H 0.280 0.720 27 H 0.409 0.591 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.141 0.859 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.648 -16.240 -3.923 17.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.066 4.066 3 Si 0.621 3.379 4 H -0.170 1.170 5 H -0.179 1.179 6 H -0.142 1.142 7 C -1.148 5.148 8 H 0.139 0.861 9 S 2.777 3.223 10 O -0.998 6.998 11 O -1.003 7.003 12 N -0.875 5.875 13 C -0.002 4.002 14 C -0.166 4.166 15 S 0.143 5.857 16 C -0.190 4.190 17 C -0.165 4.165 18 C -0.119 4.119 19 C -0.147 4.147 20 C -0.125 4.125 21 C -0.127 4.127 22 C -0.137 4.137 23 C -0.161 4.161 24 C -0.158 4.158 25 C -0.160 4.160 26 H 0.090 0.910 27 H 0.242 0.758 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.159 0.841 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.099 0.901 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.827 -15.540 -3.152 17.683 hybrid contribution -1.415 0.632 -0.559 1.647 sum 6.412 -14.908 -3.712 16.647 Atomic orbital electron populations 1.69991 1.06560 1.28942 1.39702 1.24416 0.94768 0.98730 0.88646 0.87883 0.83638 0.84653 0.81773 1.17041 1.17905 1.14246 1.30444 1.15633 1.02132 1.66603 0.86119 1.01306 0.77355 0.70337 0.73266 1.93476 1.85530 1.75809 1.44966 1.93398 1.85080 1.76187 1.45650 1.55476 1.74414 1.31093 1.26517 1.21628 0.98566 0.89707 0.90307 1.23949 1.00284 0.96999 0.95357 1.85192 1.06426 1.65281 1.28826 1.21705 0.97616 1.02189 0.97499 1.21786 0.96130 1.01258 0.97278 1.21094 0.94041 0.97436 0.99319 1.21155 0.99842 0.99667 0.94025 1.21029 0.94174 0.99796 0.97454 1.20718 0.94563 0.99507 0.97902 1.22306 0.90039 1.00066 1.01331 1.22522 0.98080 0.98540 0.96936 1.22354 0.93802 1.01836 0.97839 1.22756 0.98816 0.99497 0.94948 0.90974 0.75810 0.90778 0.89327 0.84136 0.85736 0.86066 0.85853 0.85824 0.89081 0.90558 0.91036 0.91097 0.91281 0.91076 0.90080 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.93 13.96 55.43 0.77 -23.15 16 2 C 0.15 4.46 5.47 -17.82 -0.10 4.36 16 3 Si 0.80 20.79 26.54 -169.99 -4.51 16.28 16 4 H -0.25 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.22 -5.84 5.61 56.52 0.32 -5.53 16 7 C -1.01 -28.51 10.26 30.60 0.31 -28.20 16 8 H 0.12 3.46 8.06 -52.49 -0.42 3.04 16 9 S 2.68 67.07 4.24 -107.50 -0.46 66.62 16 10 O -1.01 -27.45 16.02 -57.17 -0.92 -28.36 16 11 O -1.01 -26.73 16.30 -57.17 -0.93 -27.66 16 12 N -1.12 -21.60 5.50 -10.62 -0.06 -21.66 16 13 C 0.13 2.10 4.38 -4.05 -0.02 2.08 16 14 C -0.05 -0.71 0.43 -89.50 -0.04 -0.74 16 15 S -0.10 -1.41 19.61 -107.50 -2.11 -3.52 16 16 C -0.08 -1.12 5.80 -39.04 -0.23 -1.34 16 17 C -0.14 -1.99 6.74 -39.37 -0.27 -2.26 16 18 C -0.10 -1.31 10.04 -39.62 -0.40 -1.71 16 19 C -0.13 -1.56 10.04 -39.54 -0.40 -1.96 16 20 C -0.10 -1.28 10.04 -39.61 -0.40 -1.68 16 21 C -0.10 -1.39 9.79 -39.36 -0.39 -1.77 16 22 C -0.10 -1.16 5.46 -25.07 -0.14 -1.29 16 23 C -0.12 -1.14 6.91 -24.73 -0.17 -1.31 16 24 C -0.12 -1.08 6.83 -25.07 -0.17 -1.26 16 25 C -0.12 -1.29 4.29 -25.62 -0.11 -1.40 16 26 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.41 7.16 7.81 -34.47 -0.27 6.89 16 28 H 0.07 1.28 5.02 -51.93 -0.26 1.02 16 29 H 0.09 1.46 7.75 -51.93 -0.40 1.05 16 30 H 0.14 1.85 2.65 -52.49 -0.14 1.71 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.09 1.13 7.85 -51.93 -0.41 0.73 16 36 H 0.08 0.88 7.80 -51.93 -0.40 0.48 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.87 6.61 -51.93 -0.34 0.53 16 42 H 0.08 0.82 6.61 -51.92 -0.34 0.48 16 LS Contribution 351.74 15.07 5.30 5.30 Total: -1.00 -33.43 351.74 -11.00 -44.43 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -5.60 Total: 10.21 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: -2.50 Total: -38.49 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.72 Total: -44.81 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -1.85 Total: -56.02 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.51 Total: 16.28 kcal Atomic # 16 Polarization: 65.66 SS G_CDS: -2.56 Total: 63.09 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.43 -11.00 -44.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.240 kcal (2) G-P(sol) polarization free energy of solvation -33.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds