Wall clock time and date at job start Tue Mar 31 2020 06:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00174 * 2 1 4 4 H 1.48503 * 109.47333 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47587 * 300.00794 * 3 2 1 6 6 H 1.48509 * 109.46873 * 60.00776 * 3 2 1 7 7 C 1.38816 * 119.99511 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99453 * 196.26920 * 7 2 1 9 9 N 1.36928 * 120.00211 * 16.26842 * 7 2 1 10 10 C 1.46970 * 120.59248 * 205.72876 * 9 7 2 11 11 C 1.53379 * 108.63371 * 235.24826 * 10 9 7 12 12 N 1.46960 * 108.63348 * 310.57652 * 11 10 9 13 13 C 1.34780 * 120.59586 * 235.19892 * 12 11 10 14 14 O 1.21511 * 119.99436 * 5.85289 * 13 12 11 15 15 C 1.48160 * 120.00327 * 185.85030 * 13 12 11 16 16 C 1.39967 * 120.89065 * 215.43100 * 15 13 12 17 17 C 1.37982 * 119.13479 * 180.02562 * 16 15 13 18 18 N 1.31908 * 120.97329 * 359.97249 * 17 16 15 19 19 C 1.32173 * 121.97483 * 0.02562 * 18 17 16 20 20 O 1.35685 * 119.62298 * 179.97438 * 19 18 17 21 21 C 1.42900 * 117.00237 * 0.02562 * 20 19 18 22 22 C 1.52994 * 109.47192 * 179.97438 * 21 20 19 23 23 F 1.39898 * 109.47128 * 299.99613 * 22 21 20 24 24 F 1.39896 * 109.47250 * 59.99728 * 22 21 20 25 25 C 1.38897 * 120.75437 * 0.27461 * 19 18 17 26 26 C 1.46961 * 118.81497 * 55.48079 * 12 11 10 27 27 C 1.46965 * 120.59773 * 25.75319 * 9 7 2 28 28 H 0.96998 * 119.99729 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.60913 * 115.51173 * 10 9 7 30 30 H 1.08996 * 109.75219 * 355.07497 * 10 9 7 31 31 H 1.08992 * 109.60849 * 190.83128 * 11 10 9 32 32 H 1.09001 * 109.74616 * 70.40548 * 11 10 9 33 33 H 1.08002 * 120.43179 * 359.97297 * 16 15 13 34 34 H 1.07998 * 119.50754 * 180.02562 * 17 16 15 35 35 H 1.09003 * 109.46480 * 299.99705 * 21 20 19 36 36 H 1.08995 * 109.47000 * 59.99418 * 21 20 19 37 37 H 1.09001 * 109.46899 * 179.97438 * 22 21 20 38 38 H 1.07996 * 120.53164 * 179.72410 * 25 19 18 39 39 H 1.08997 * 109.61276 * 64.26215 * 26 12 11 40 40 H 1.08997 * 109.61581 * 184.77236 * 26 12 11 41 41 H 1.09003 * 109.61098 * 244.49653 * 27 9 7 42 42 H 1.09006 * 109.60833 * 5.00607 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2127 7 6 2.0102 -1.2022 -0.0005 8 1 3.0578 -1.2211 0.2615 9 7 1.3666 -2.3641 -0.3332 10 6 1.8491 -3.6574 0.1716 11 6 2.0977 -4.5876 -1.0223 12 7 0.9126 -4.5638 -1.8909 13 6 0.2796 -5.7076 -2.2192 14 8 0.6215 -6.7579 -1.7129 15 6 -0.8329 -5.6842 -3.1974 16 6 -1.9325 -6.5386 -3.0557 17 6 -2.9481 -6.4867 -3.9883 18 7 -2.8949 -5.6467 -5.0039 19 6 -1.8767 -4.8220 -5.1775 20 8 -1.8710 -3.9778 -6.2398 21 6 -2.9937 -4.0373 -7.1219 22 6 -2.8103 -3.0203 -8.2501 23 9 -2.7113 -1.7347 -7.7074 24 9 -1.6426 -3.3177 -8.9607 25 6 -0.8097 -4.8138 -4.2883 26 6 0.4335 -3.2713 -2.4003 27 6 0.1815 -2.3405 -1.2019 28 1 -0.4850 0.8401 0.0004 29 1 1.0979 -4.0972 0.8276 30 1 2.7781 -3.5141 0.7233 31 1 2.2694 -5.6030 -0.6653 32 1 2.9682 -4.2444 -1.5815 33 1 -1.9848 -7.2300 -2.2277 34 1 -3.7995 -7.1430 -3.8845 35 1 -3.0710 -5.0392 -7.5443 36 1 -3.9034 -3.8052 -6.5682 37 1 -3.6664 -3.0661 -8.9231 38 1 0.0225 -4.1415 -4.4361 39 1 1.1875 -2.8336 -3.0545 40 1 -0.4942 -3.4171 -2.9536 41 1 -0.6884 -2.6865 -0.6436 42 1 0.0098 -1.3250 -1.5590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095442968.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:57 Heat of formation + Delta-G solvation = -88.680797 kcal Electronic energy + Delta-G solvation = -29938.752596 eV Core-core repulsion = 25363.765234 eV Total energy + Delta-G solvation = -4574.987362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.20513 -47.23470 -41.09314 -39.61981 -38.03359 -36.86057 -34.14890 -32.97432 -31.60702 -31.21212 -30.19015 -29.66384 -27.24727 -25.14159 -23.86550 -23.73594 -22.99618 -22.57200 -20.86116 -19.55190 -18.46348 -17.79923 -17.61322 -17.47648 -16.77701 -16.32712 -16.17510 -16.04618 -15.95245 -15.36054 -14.96124 -14.72093 -14.29059 -14.13413 -13.85770 -13.71465 -13.60044 -13.53536 -13.41674 -13.35457 -13.21438 -12.68116 -12.50672 -12.14252 -11.68010 -11.57404 -11.39475 -11.34956 -10.90646 -10.77858 -10.54092 -10.33848 -10.19823 -10.16279 -9.95490 -9.88652 -9.43981 -8.70962 -8.65696 -8.36846 -6.79238 -5.88039 -3.32205 0.65764 0.95927 2.41448 2.86757 3.20137 3.32670 3.41042 3.42216 3.42834 3.64965 3.79191 3.98107 4.13325 4.38696 4.43158 4.57257 4.76293 4.84759 4.92248 5.03206 5.05322 5.22762 5.30084 5.42488 5.57337 5.71114 5.78775 5.83170 5.98506 6.02825 6.05436 6.12099 6.28268 6.34781 6.70868 6.82760 6.86836 7.14955 7.46068 7.54139 7.66090 7.73720 8.29348 8.31477 9.08261 9.70857 10.25653 11.19146 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009366 B = 0.003604 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.691011 B = 7766.762164 C =10022.954279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.001 3.999 3 Si 0.906 3.094 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.253 4.253 8 H 0.070 0.930 9 N -0.592 5.592 10 C 0.132 3.868 11 C 0.095 3.905 12 N -0.583 5.583 13 C 0.552 3.448 14 O -0.544 6.544 15 C -0.038 4.038 16 C -0.156 4.156 17 C 0.136 3.864 18 N -0.532 5.532 19 C 0.316 3.684 20 O -0.292 6.292 21 C 0.019 3.981 22 C 0.270 3.730 23 F -0.196 7.196 24 F -0.199 7.199 25 C -0.154 4.154 26 C 0.062 3.938 27 C 0.155 3.845 28 H 0.255 0.745 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.148 0.852 34 H 0.167 0.833 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.131 0.869 38 H 0.156 0.844 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.023 0.977 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.333 -10.453 -14.649 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.088 0.912 9 N -0.315 5.315 10 C 0.004 3.996 11 C -0.029 4.029 12 N -0.314 5.314 13 C 0.339 3.661 14 O -0.423 6.423 15 C -0.049 4.049 16 C -0.177 4.177 17 C -0.019 4.019 18 N -0.256 5.256 19 C 0.138 3.862 20 O -0.199 6.199 21 C -0.057 4.057 22 C 0.217 3.783 23 F -0.177 7.177 24 F -0.180 7.180 25 C -0.175 4.175 26 C -0.061 4.061 27 C 0.028 3.972 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.166 0.834 34 H 0.184 0.816 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.148 0.852 38 H 0.174 0.826 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.041 0.959 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.659 -10.560 -15.034 20.310 hybrid contribution 0.847 0.941 0.525 1.371 sum -7.812 -9.619 -14.509 19.080 Atomic orbital electron populations 1.69979 1.05286 1.25613 1.54077 1.25028 0.95360 0.98500 1.00843 0.86170 0.79295 0.83631 0.77363 1.20208 1.21428 1.21671 1.19297 0.92604 0.84475 1.41843 0.91188 1.44046 1.32081 1.01329 1.54026 1.21288 0.98541 0.87070 0.92663 1.22302 0.86008 1.01435 0.93126 1.48023 1.29039 1.06410 1.47888 1.18117 0.82128 0.84165 0.81719 1.90742 1.66487 1.30661 1.54454 1.20217 0.95463 0.94721 0.94451 1.22086 0.93720 1.00128 1.01778 1.22340 0.97565 0.94005 0.88032 1.67116 1.25830 1.08015 1.24676 1.19508 0.90624 0.88805 0.87266 1.86313 1.43085 1.56042 1.34491 1.23821 0.90551 1.00571 0.90797 1.22113 0.86966 0.79157 0.90101 1.93052 1.96817 1.40714 1.87134 1.93026 1.52487 1.93043 1.79491 1.21465 1.00072 1.01540 0.94423 1.23327 0.99253 0.83510 1.00010 1.21398 0.88438 0.99360 0.88015 0.93464 0.95729 0.91312 0.89738 0.91438 0.83447 0.81552 0.88499 0.88324 0.85159 0.82617 0.91217 0.89888 0.95931 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.32 10.93 55.49 0.61 -24.72 16 2 C 0.00 0.02 4.97 -17.43 -0.09 -0.06 16 3 Si 0.91 21.07 29.58 -169.99 -5.03 16.04 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.66 9.62 -15.06 -0.14 -6.81 16 8 H 0.07 1.80 7.87 -52.49 -0.41 1.39 16 9 N -0.59 -14.29 2.98 -171.76 -0.51 -14.80 16 10 C 0.13 2.70 6.67 -3.59 -0.02 2.67 16 11 C 0.09 1.70 6.60 -3.60 -0.02 1.68 16 12 N -0.58 -10.50 2.94 -173.22 -0.51 -11.01 16 13 C 0.55 9.67 7.42 -12.18 -0.09 9.58 16 14 O -0.54 -10.70 16.31 5.36 0.09 -10.61 16 15 C -0.04 -0.56 5.31 -104.68 -0.56 -1.11 16 16 C -0.16 -1.93 9.72 -39.03 -0.38 -2.31 16 17 C 0.14 1.42 11.17 -17.61 -0.20 1.22 16 18 N -0.53 -6.32 9.18 -13.38 -0.12 -6.44 16 19 C 0.32 4.17 7.49 -17.16 -0.13 4.04 16 20 O -0.29 -3.70 10.00 -18.76 -0.19 -3.89 16 21 C 0.02 0.17 5.53 37.15 0.21 0.37 16 22 C 0.27 2.10 5.63 37.15 0.21 2.31 16 23 F -0.20 -2.18 17.28 2.25 0.04 -2.14 16 24 F -0.20 -2.09 17.28 2.25 0.04 -2.05 16 25 C -0.15 -2.15 7.40 -38.84 -0.29 -2.44 16 26 C 0.06 1.14 5.06 -3.37 -0.02 1.12 16 27 C 0.15 3.52 5.55 -3.37 -0.02 3.51 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 31 H 0.08 1.46 6.99 -51.93 -0.36 1.10 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.15 1.67 8.06 -52.49 -0.42 1.24 16 34 H 0.17 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.10 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.10 0.75 8.10 -51.93 -0.42 0.32 16 37 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.16 2.15 6.19 -52.49 -0.32 1.83 16 39 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 40 H 0.08 1.37 4.35 -51.93 -0.23 1.14 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.11 2.80 5.74 -51.93 -0.30 2.50 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -32.68 356.35 -6.73 -39.40 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -4.97 Total: 1.07 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: -1.54 Total: 13.77 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.54 Total: -56.97 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.10 Total: -14.50 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.08 Total: -4.19 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.68 -6.73 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095442968.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.277 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds