Wall clock time and date at job start Tue Mar 31 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00174 * 2 1 4 4 H 1.48503 * 109.47333 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47587 * 300.00794 * 3 2 1 6 6 H 1.48509 * 109.46873 * 60.00776 * 3 2 1 7 7 C 1.38816 * 119.99511 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99453 * 196.26920 * 7 2 1 9 9 N 1.36928 * 120.00211 * 16.26842 * 7 2 1 10 10 C 1.46970 * 120.59248 * 205.72876 * 9 7 2 11 11 C 1.53379 * 108.63371 * 235.24826 * 10 9 7 12 12 N 1.46960 * 108.63348 * 310.57652 * 11 10 9 13 13 C 1.34780 * 120.59586 * 235.19892 * 12 11 10 14 14 O 1.21511 * 119.99436 * 5.85289 * 13 12 11 15 15 C 1.48160 * 120.00327 * 185.85030 * 13 12 11 16 16 C 1.39967 * 120.89065 * 215.43100 * 15 13 12 17 17 C 1.37982 * 119.13479 * 180.02562 * 16 15 13 18 18 N 1.31908 * 120.97329 * 359.97249 * 17 16 15 19 19 C 1.32173 * 121.97483 * 0.02562 * 18 17 16 20 20 O 1.35685 * 119.62298 * 179.97438 * 19 18 17 21 21 C 1.42900 * 117.00237 * 0.02562 * 20 19 18 22 22 C 1.52994 * 109.47192 * 179.97438 * 21 20 19 23 23 F 1.39898 * 109.47128 * 299.99613 * 22 21 20 24 24 F 1.39896 * 109.47250 * 59.99728 * 22 21 20 25 25 C 1.38897 * 120.75437 * 0.27461 * 19 18 17 26 26 C 1.46961 * 118.81497 * 55.48079 * 12 11 10 27 27 C 1.46965 * 120.59773 * 25.75319 * 9 7 2 28 28 H 0.96998 * 119.99729 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.60913 * 115.51173 * 10 9 7 30 30 H 1.08996 * 109.75219 * 355.07497 * 10 9 7 31 31 H 1.08992 * 109.60849 * 190.83128 * 11 10 9 32 32 H 1.09001 * 109.74616 * 70.40548 * 11 10 9 33 33 H 1.08002 * 120.43179 * 359.97297 * 16 15 13 34 34 H 1.07998 * 119.50754 * 180.02562 * 17 16 15 35 35 H 1.09003 * 109.46480 * 299.99705 * 21 20 19 36 36 H 1.08995 * 109.47000 * 59.99418 * 21 20 19 37 37 H 1.09001 * 109.46899 * 179.97438 * 22 21 20 38 38 H 1.07996 * 120.53164 * 179.72410 * 25 19 18 39 39 H 1.08997 * 109.61276 * 64.26215 * 26 12 11 40 40 H 1.08997 * 109.61581 * 184.77236 * 26 12 11 41 41 H 1.09003 * 109.61098 * 244.49653 * 27 9 7 42 42 H 1.09006 * 109.60833 * 5.00607 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2127 7 6 2.0102 -1.2022 -0.0005 8 1 3.0578 -1.2211 0.2615 9 7 1.3666 -2.3641 -0.3332 10 6 1.8491 -3.6574 0.1716 11 6 2.0977 -4.5876 -1.0223 12 7 0.9126 -4.5638 -1.8909 13 6 0.2796 -5.7076 -2.2192 14 8 0.6215 -6.7579 -1.7129 15 6 -0.8329 -5.6842 -3.1974 16 6 -1.9325 -6.5386 -3.0557 17 6 -2.9481 -6.4867 -3.9883 18 7 -2.8949 -5.6467 -5.0039 19 6 -1.8767 -4.8220 -5.1775 20 8 -1.8710 -3.9778 -6.2398 21 6 -2.9937 -4.0373 -7.1219 22 6 -2.8103 -3.0203 -8.2501 23 9 -2.7113 -1.7347 -7.7074 24 9 -1.6426 -3.3177 -8.9607 25 6 -0.8097 -4.8138 -4.2883 26 6 0.4335 -3.2713 -2.4003 27 6 0.1815 -2.3405 -1.2019 28 1 -0.4850 0.8401 0.0004 29 1 1.0979 -4.0972 0.8276 30 1 2.7781 -3.5141 0.7233 31 1 2.2694 -5.6030 -0.6653 32 1 2.9682 -4.2444 -1.5815 33 1 -1.9848 -7.2300 -2.2277 34 1 -3.7995 -7.1430 -3.8845 35 1 -3.0710 -5.0392 -7.5443 36 1 -3.9034 -3.8052 -6.5682 37 1 -3.6664 -3.0661 -8.9231 38 1 0.0225 -4.1415 -4.4361 39 1 1.1875 -2.8336 -3.0545 40 1 -0.4942 -3.4171 -2.9536 41 1 -0.6884 -2.6865 -0.6436 42 1 0.0098 -1.3250 -1.5590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095442968.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:56 Heat of formation + Delta-G solvation = -110.787606 kcal Electronic energy + Delta-G solvation = -29939.711219 eV Core-core repulsion = 25363.765234 eV Total energy + Delta-G solvation = -4575.945985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.91033 -47.96676 -42.15617 -40.88911 -39.04256 -38.44834 -35.81948 -34.24882 -32.93624 -32.41468 -31.79316 -30.52295 -28.94002 -26.48033 -25.19790 -24.98822 -24.14312 -23.79652 -22.27193 -20.89582 -19.71839 -18.72216 -18.51031 -18.49790 -18.00032 -17.54161 -17.21894 -17.08038 -16.95697 -16.77122 -16.56197 -16.17617 -15.52334 -15.37234 -15.17084 -15.00296 -14.91162 -14.75426 -14.61426 -14.43085 -14.32339 -14.01668 -13.41896 -13.35504 -13.22811 -13.02113 -12.73351 -12.50946 -12.35083 -12.22832 -12.07861 -12.02106 -11.95604 -11.72813 -11.46670 -11.03476 -10.70147 -10.60247 -9.96983 -9.64708 -8.72560 -7.89696 -5.37323 -0.40765 0.01062 1.46857 1.50336 1.50767 1.59833 1.63961 1.89810 2.49706 2.63357 2.81501 3.09013 3.23869 3.25928 3.32168 3.52084 3.54584 3.78266 3.82866 3.93400 4.11893 4.15468 4.17743 4.30962 4.35426 4.42650 4.47911 4.49615 4.54242 4.65439 4.70957 4.75647 4.95673 5.05008 5.17203 5.19405 5.43497 5.57407 5.62441 5.98590 6.26422 6.32917 6.61186 6.88789 7.08081 7.76108 8.27829 9.15345 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009366 B = 0.003604 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2988.691011 B = 7766.762164 C =10022.954279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.049 4.049 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.294 1.294 7 C -0.262 4.262 8 H 0.074 0.926 9 N -0.609 5.609 10 C 0.131 3.869 11 C 0.104 3.896 12 N -0.589 5.589 13 C 0.554 3.446 14 O -0.567 6.567 15 C -0.056 4.056 16 C -0.159 4.159 17 C 0.152 3.848 18 N -0.527 5.527 19 C 0.313 3.687 20 O -0.313 6.313 21 C 0.012 3.988 22 C 0.264 3.736 23 F -0.219 7.219 24 F -0.217 7.217 25 C -0.168 4.168 26 C 0.083 3.917 27 C 0.161 3.839 28 H 0.252 0.748 29 H 0.011 0.989 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.158 0.842 34 H 0.212 0.788 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.188 0.812 38 H 0.150 0.850 39 H 0.075 0.925 40 H 0.102 0.898 41 H -0.004 1.004 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.184 -11.516 -16.136 21.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.244 4.244 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.221 1.221 7 C -0.392 4.392 8 H 0.092 0.908 9 N -0.333 5.333 10 C 0.005 3.995 11 C -0.020 4.020 12 N -0.320 5.320 13 C 0.343 3.657 14 O -0.448 6.448 15 C -0.067 4.067 16 C -0.180 4.180 17 C -0.004 4.004 18 N -0.252 5.252 19 C 0.135 3.865 20 O -0.221 6.221 21 C -0.064 4.064 22 C 0.212 3.788 23 F -0.200 7.200 24 F -0.199 7.199 25 C -0.189 4.189 26 C -0.040 4.040 27 C 0.035 3.965 28 H 0.061 0.939 29 H 0.030 0.970 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.175 0.825 34 H 0.229 0.771 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.204 0.796 38 H 0.168 0.832 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.014 0.986 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.494 -11.641 -16.540 22.343 hybrid contribution 1.031 1.176 0.989 1.850 sum -8.463 -10.465 -15.551 20.566 Atomic orbital electron populations 1.70135 1.06647 1.25943 1.55496 1.25745 0.96044 1.01400 1.01171 0.85183 0.78638 0.79734 0.76727 1.19024 1.21590 1.22142 1.19625 0.92967 0.85468 1.41090 0.90817 1.44297 1.32189 1.02046 1.54719 1.21375 0.98371 0.86020 0.93717 1.22163 0.86486 1.01105 0.92218 1.48046 1.29248 1.06542 1.48144 1.18503 0.82218 0.83396 0.81596 1.90718 1.67258 1.31265 1.55552 1.20080 0.95641 0.96523 0.94442 1.22324 0.93400 0.99644 1.02612 1.23040 0.97810 0.93205 0.86333 1.67253 1.25090 1.07845 1.24968 1.19541 0.90569 0.89035 0.87339 1.86288 1.45009 1.55993 1.34778 1.24180 0.89763 1.01923 0.90540 1.22801 0.87830 0.77633 0.90584 1.93003 1.96953 1.42432 1.87636 1.92987 1.53983 1.93082 1.79822 1.21381 1.00658 1.01920 0.94987 1.23034 1.00472 0.82711 0.97798 1.21181 0.87394 0.98865 0.89101 0.93911 0.97050 0.90313 0.88817 0.90365 0.82478 0.77150 0.86741 0.87145 0.79578 0.83192 0.90647 0.88023 0.98552 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.76 10.93 21.65 0.24 -53.53 16 2 C -0.05 -2.62 4.97 84.86 0.42 -2.20 16 3 Si 0.97 43.72 29.58 68.60 2.03 45.75 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 7 C -0.26 -13.91 9.62 84.04 0.81 -13.10 16 8 H 0.07 3.78 7.87 -2.91 -0.02 3.76 16 9 N -0.61 -29.89 2.98 -697.32 -2.08 -31.96 16 10 C 0.13 5.42 6.67 86.42 0.58 6.00 16 11 C 0.10 3.68 6.60 86.42 0.57 4.25 16 12 N -0.59 -21.13 2.94 -820.22 -2.41 -23.54 16 13 C 0.55 19.18 7.42 86.88 0.65 19.83 16 14 O -0.57 -21.97 16.31 -3.75 -0.06 -22.04 16 15 C -0.06 -1.61 5.31 -19.90 -0.11 -1.72 16 16 C -0.16 -3.60 9.72 22.63 0.22 -3.38 16 17 C 0.15 2.67 11.17 84.62 0.94 3.61 16 18 N -0.53 -11.07 9.18 -309.14 -2.84 -13.91 16 19 C 0.31 7.81 7.49 84.80 0.63 8.45 16 20 O -0.31 -7.59 10.00 -90.03 -0.90 -8.49 16 21 C 0.01 0.17 5.53 71.98 0.40 0.57 16 22 C 0.26 3.56 5.63 71.98 0.41 3.96 16 23 F -0.22 -4.67 17.28 44.97 0.78 -3.89 16 24 F -0.22 -4.28 17.28 44.97 0.78 -3.51 16 25 C -0.17 -4.60 7.40 22.75 0.17 -4.43 16 26 C 0.08 3.05 5.06 86.57 0.44 3.49 16 27 C 0.16 7.58 5.55 86.57 0.48 8.06 16 28 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 3.03 7.93 -2.39 -0.02 3.02 16 31 H 0.09 3.17 6.99 -2.39 -0.02 3.15 16 32 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 34 H 0.21 1.78 8.06 -2.91 -0.02 1.75 16 35 H 0.11 1.30 8.10 -2.39 -0.02 1.28 16 36 H 0.11 1.39 8.10 -2.39 -0.02 1.37 16 37 H 0.19 0.39 8.14 -2.39 -0.02 0.38 16 38 H 0.15 4.15 6.19 -2.91 -0.02 4.14 16 39 H 0.08 2.69 8.12 -2.39 -0.02 2.67 16 40 H 0.10 3.37 4.35 -2.39 -0.01 3.36 16 41 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.08 4.40 5.74 -2.38 -0.01 4.38 16 Total: -1.00 -72.09 356.35 3.20 -68.89 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 1.07 Total: 12.84 kcal Atomic # 6 Polarization: 26.78 SS G_CDS: 6.61 Total: 33.39 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -7.09 Total: -122.94 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.96 Total: -30.53 kcal Atomic # 9 Polarization: -8.96 SS G_CDS: 1.55 Total: -7.40 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -72.09 3.20 -68.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095442968.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.899 kcal (2) G-P(sol) polarization free energy of solvation -72.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds