Wall clock time and date at job start Tue Mar 31 2020 05:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47174 * 2 1 4 4 C 1.53000 * 109.47291 * 239.99695 * 2 1 3 5 5 C 1.52999 * 117.50204 * 128.62183 * 4 2 1 6 6 C 1.52996 * 60.00205 * 252.51254 * 5 4 2 7 7 N 1.46500 * 109.47055 * 119.99754 * 2 1 3 8 8 C 1.46500 * 120.00060 * 62.52502 * 7 2 1 9 9 C 1.50702 * 109.46867 * 269.99894 * 8 7 2 10 10 H 1.08003 * 120.00343 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00184 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99789 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00390 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46605 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47065 * 119.99872 * 13 11 9 16 16 H 1.48499 * 109.47211 * 240.00043 * 13 11 9 17 17 C 1.34776 * 120.00259 * 242.52286 * 7 2 1 18 18 O 1.21572 * 120.00496 * 186.19985 * 17 7 2 19 19 C 1.47692 * 119.99895 * 6.19003 * 17 7 2 20 20 C 1.39688 * 120.08230 * 225.61195 * 19 17 7 21 21 C 1.37743 * 119.91977 * 179.97438 * 20 19 17 22 22 C 1.39031 * 120.07851 * 359.97438 * 21 20 19 23 23 N 1.39940 * 119.91794 * 180.02562 * 22 21 20 24 24 C 1.36306 * 126.86161 * 180.02562 * 23 22 21 25 25 C 1.34962 * 106.77600 * 179.97438 * 24 23 22 26 26 N 1.33368 * 109.01942 * 359.97438 * 25 24 23 27 27 N 1.28773 * 109.92438 * 0.02562 * 26 25 24 28 28 C 1.39028 * 120.15737 * 0.27551 * 22 21 20 29 29 C 1.37741 * 120.08053 * 359.45067 * 28 22 21 30 30 H 1.08999 * 109.47292 * 300.00265 * 1 2 3 31 31 H 1.09000 * 109.47156 * 60.00754 * 1 2 3 32 32 H 1.09004 * 109.46932 * 180.02562 * 1 2 3 33 33 H 1.09001 * 115.55235 * 274.32943 * 4 2 1 34 34 H 1.09004 * 117.49664 * 0.02562 * 5 4 2 35 35 H 1.08997 * 117.50340 * 145.02022 * 5 4 2 36 36 H 1.09000 * 117.49766 * 252.51492 * 6 5 4 37 37 H 1.08999 * 117.52338 * 107.47487 * 6 5 4 38 38 H 1.08998 * 109.47149 * 29.99731 * 8 7 2 39 39 H 1.08994 * 109.47331 * 150.00269 * 8 7 2 40 40 H 0.97002 * 120.00072 * 180.02562 * 12 11 9 41 41 H 1.07998 * 120.04326 * 359.95314 * 20 19 17 42 42 H 1.07994 * 119.96016 * 180.02562 * 21 20 19 43 43 H 1.08004 * 126.61707 * 359.69282 * 24 23 22 44 44 H 1.08004 * 125.49154 * 179.97438 * 25 24 23 45 45 H 1.08003 * 119.95341 * 179.70518 * 28 22 21 46 46 H 1.07997 * 120.03563 * 180.27569 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.0741 0.0050 -2.1117 6 6 1.6358 -0.1496 -2.6096 7 7 2.0183 -0.6906 1.1962 8 6 1.7106 -2.1082 1.4005 9 6 0.4166 -2.2366 2.1622 10 1 -0.1225 -1.3509 2.4643 11 6 -0.0787 -3.4850 2.4744 12 7 0.5784 -4.5636 2.1079 13 14 -1.6823 -3.6442 3.4192 14 1 -2.2201 -2.2915 3.7129 15 1 -2.6647 -4.4016 2.6028 16 1 -1.4365 -4.3660 4.6935 17 6 2.7506 -0.0217 2.1087 18 8 3.2505 -0.6182 3.0427 19 6 2.9461 1.4360 1.9740 20 6 4.2163 1.9910 2.1463 21 6 4.3949 3.3509 2.0194 22 6 3.3128 4.1708 1.7197 23 7 3.4981 5.5519 1.5910 24 6 2.5439 6.4816 1.3028 25 6 3.1633 7.6805 1.2773 26 7 4.4589 7.5060 1.5410 27 7 4.7032 6.2565 1.7339 28 6 2.0462 3.6225 1.5527 29 6 1.8612 2.2628 1.6726 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 2.1267 -1.8045 -1.1641 34 1 3.3915 0.9966 -1.7889 35 1 3.8416 -0.6002 -2.5941 36 1 1.4568 -0.8568 -3.4196 37 1 1.0061 0.7401 -2.6146 38 1 1.6135 -2.6020 0.4336 39 1 2.5144 -2.5763 1.9685 40 1 0.2299 -5.4419 2.3272 41 1 5.0574 1.3548 2.3791 42 1 5.3767 3.7807 2.1520 43 1 1.4953 6.2945 1.1242 44 1 2.6865 8.6284 1.0759 45 1 1.2071 4.2631 1.3246 46 1 0.8778 1.8372 1.5383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095445101.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:43 Heat of formation + Delta-G solvation = 129.871939 kcal Electronic energy + Delta-G solvation = -29412.742248 eV Core-core repulsion = 25499.180236 eV Total energy + Delta-G solvation = -3913.562012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.48004 -40.31997 -38.61247 -37.43558 -34.74174 -34.65049 -32.71311 -31.71420 -30.88421 -30.11558 -29.84293 -27.43091 -25.05416 -23.90779 -23.70683 -23.06128 -22.16251 -21.79425 -21.41849 -20.19659 -19.02945 -18.66215 -17.39888 -16.55044 -16.13724 -15.83667 -15.57175 -15.42341 -15.13616 -14.81279 -14.47429 -14.40655 -14.28238 -13.77558 -13.59190 -13.45518 -13.20595 -12.67518 -12.57535 -12.22876 -12.18007 -12.01603 -11.73004 -11.53419 -11.49733 -11.33965 -11.23158 -11.15701 -10.96144 -10.66790 -10.51766 -10.31097 -10.09855 -9.88451 -9.73715 -9.58568 -9.31073 -9.18909 -8.59997 -8.48408 -7.78239 -6.10755 -4.14830 0.13916 1.03032 1.47149 1.81321 2.22245 3.08212 3.24531 3.33192 3.35230 3.54732 3.72804 4.00610 4.08188 4.14017 4.38110 4.48669 4.64836 4.66723 4.74218 4.82633 4.92848 5.01299 5.06935 5.19586 5.21328 5.24423 5.31409 5.41172 5.62840 5.67619 5.70301 5.70447 5.78417 5.83586 5.95620 6.01669 6.05899 6.19787 6.20486 6.22045 6.32431 6.45307 6.61259 6.85595 6.98870 7.37194 7.44125 7.80433 7.85272 8.15630 8.26548 8.77243 8.93475 9.49616 10.97396 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.003050 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.300148 B = 9177.032089 C = 9813.047337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.161 3.839 3 H 0.082 0.918 4 C -0.156 4.156 5 C -0.183 4.183 6 C -0.174 4.174 7 N -0.579 5.579 8 C 0.245 3.755 9 C -0.523 4.523 10 H 0.059 0.941 11 C 0.062 3.938 12 N -0.893 5.893 13 Si 0.895 3.105 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.547 3.453 18 O -0.530 6.530 19 C -0.104 4.104 20 C -0.053 4.053 21 C -0.110 4.110 22 C 0.141 3.859 23 N -0.312 5.312 24 C 0.022 3.978 25 C -0.075 4.075 26 N -0.235 5.235 27 N -0.063 5.063 28 C -0.131 4.131 29 C -0.070 4.070 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.037 0.963 39 H 0.045 0.955 40 H 0.263 0.737 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.196 0.804 44 H 0.190 0.810 45 H 0.136 0.864 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 18.572 -8.082 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.056 3.944 3 H 0.100 0.900 4 C -0.174 4.174 5 C -0.220 4.220 6 C -0.211 4.211 7 N -0.309 5.309 8 C 0.126 3.874 9 C -0.561 4.561 10 H 0.078 0.922 11 C -0.140 4.140 12 N -0.532 5.532 13 Si 0.723 3.277 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 C 0.332 3.668 18 O -0.407 6.407 19 C -0.108 4.108 20 C -0.072 4.072 21 C -0.130 4.130 22 C 0.048 3.952 23 N -0.094 5.094 24 C -0.128 4.128 25 C -0.230 4.230 26 N -0.104 5.104 27 N -0.041 5.041 28 C -0.152 4.152 29 C -0.089 4.089 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.134 0.866 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.162 0.838 42 H 0.162 0.838 43 H 0.213 0.787 44 H 0.207 0.793 45 H 0.154 0.846 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.526 17.963 -7.288 19.549 hybrid contribution -2.183 -0.175 0.264 2.205 sum 0.343 17.788 -7.024 19.127 Atomic orbital electron populations 1.22185 0.94306 1.04843 1.00289 1.20777 0.94879 0.95051 0.83673 0.89982 1.22726 1.02864 1.00763 0.91088 1.22980 0.92569 1.01741 1.04687 1.22874 0.97733 1.03085 0.97421 1.48197 1.49849 1.13649 1.19211 1.19336 0.96918 0.73726 0.97426 1.21440 1.06445 0.92382 1.35879 0.92233 1.24922 0.97578 0.95689 0.95847 1.69937 1.38822 0.97839 1.46566 0.86491 0.83269 0.78134 0.79815 1.19796 1.20991 1.20924 1.18046 0.79729 0.85601 0.83382 1.90795 1.49024 1.68710 1.32209 1.20498 0.94327 0.95436 1.00519 1.21154 0.96942 0.93768 0.95339 1.20852 0.98450 0.92902 1.00829 1.17686 0.95500 0.78254 1.03727 1.48023 1.08292 1.06195 1.46857 1.23598 0.97497 0.89099 1.02595 1.23254 0.90200 0.99277 1.10295 1.74350 1.15969 1.09192 1.10936 1.82143 1.02233 0.97567 1.22182 1.20756 0.94662 0.95773 1.03992 1.21407 0.99753 0.91913 0.95874 0.92719 0.92850 0.89504 0.86592 0.89300 0.89081 0.88898 0.88955 0.94490 0.93702 0.92745 0.83813 0.83850 0.78693 0.79317 0.84594 0.83507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 8.04 37.15 0.30 -2.02 16 2 C 0.16 2.42 2.01 -67.93 -0.14 2.29 16 3 H 0.08 1.08 4.46 -51.93 -0.23 0.85 16 4 C -0.16 -2.23 5.14 -90.62 -0.47 -2.70 16 5 C -0.18 -2.19 10.18 -26.73 -0.27 -2.46 16 6 C -0.17 -1.97 9.74 -26.73 -0.26 -2.23 16 7 N -0.58 -11.31 2.39 -168.64 -0.40 -11.72 16 8 C 0.24 5.94 4.69 -5.19 -0.02 5.92 16 9 C -0.52 -13.69 7.83 -34.44 -0.27 -13.96 16 10 H 0.06 1.54 7.61 -52.48 -0.40 1.14 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 13 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 14 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 C 0.55 10.85 7.22 -12.40 -0.09 10.76 16 18 O -0.53 -12.86 16.54 5.30 0.09 -12.78 16 19 C -0.10 -1.55 4.94 -104.95 -0.52 -2.07 16 20 C -0.05 -0.70 9.68 -39.22 -0.38 -1.08 16 21 C -0.11 -1.29 9.66 -39.47 -0.38 -1.68 16 22 C 0.14 1.56 6.70 -83.57 -0.56 1.00 16 23 N -0.31 -3.42 3.85 -10.50 -0.04 -3.46 16 24 C 0.02 0.17 10.92 -16.73 -0.18 -0.01 16 25 C -0.07 -0.63 11.86 -18.05 -0.21 -0.84 16 26 N -0.24 -2.87 12.33 30.09 0.37 -2.50 16 27 N -0.06 -0.83 13.15 60.35 0.79 -0.04 16 28 C -0.13 -1.28 9.46 -39.47 -0.37 -1.65 16 29 C -0.07 -0.85 7.38 -39.22 -0.29 -1.14 16 30 H 0.05 0.79 6.77 -51.93 -0.35 0.44 16 31 H 0.05 0.62 7.29 -51.93 -0.38 0.24 16 32 H 0.09 1.55 6.92 -51.93 -0.36 1.19 16 33 H 0.12 1.95 6.43 -51.93 -0.33 1.61 16 34 H 0.09 1.01 8.05 -51.93 -0.42 0.59 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 0.92 7.61 -51.93 -0.39 0.53 16 38 H 0.04 0.91 6.25 -51.93 -0.32 0.59 16 39 H 0.04 1.26 7.34 -51.93 -0.38 0.88 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.14 1.57 7.72 -52.49 -0.41 1.16 16 43 H 0.20 0.68 7.16 -52.48 -0.38 0.30 16 44 H 0.19 0.87 8.06 -52.48 -0.42 0.45 16 45 H 0.14 0.86 6.82 -52.48 -0.36 0.50 16 46 H 0.15 1.74 5.45 -52.49 -0.29 1.45 16 LS Contribution 379.90 15.07 5.73 5.73 Total: -1.00 -33.05 379.90 -7.79 -40.84 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.82 Total: 3.01 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -4.22 Total: -10.30 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 1.46 Total: -42.41 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.05 -7.79 -40.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095445101.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.709 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds