Wall clock time and date at job start Tue Mar 31 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47174 * 2 1 4 4 C 1.53000 * 109.47291 * 239.99695 * 2 1 3 5 5 C 1.52999 * 117.50204 * 128.62183 * 4 2 1 6 6 C 1.52996 * 60.00205 * 252.51254 * 5 4 2 7 7 N 1.46500 * 109.47055 * 119.99754 * 2 1 3 8 8 C 1.46500 * 120.00060 * 62.52502 * 7 2 1 9 9 C 1.50702 * 109.46867 * 269.99894 * 8 7 2 10 10 H 1.08003 * 120.00343 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00184 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99789 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00390 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46605 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47065 * 119.99872 * 13 11 9 16 16 H 1.48499 * 109.47211 * 240.00043 * 13 11 9 17 17 C 1.34776 * 120.00259 * 242.52286 * 7 2 1 18 18 O 1.21572 * 120.00496 * 186.19985 * 17 7 2 19 19 C 1.47692 * 119.99895 * 6.19003 * 17 7 2 20 20 C 1.39688 * 120.08230 * 225.61195 * 19 17 7 21 21 C 1.37743 * 119.91977 * 179.97438 * 20 19 17 22 22 C 1.39031 * 120.07851 * 359.97438 * 21 20 19 23 23 N 1.39940 * 119.91794 * 180.02562 * 22 21 20 24 24 C 1.36306 * 126.86161 * 180.02562 * 23 22 21 25 25 C 1.34962 * 106.77600 * 179.97438 * 24 23 22 26 26 N 1.33368 * 109.01942 * 359.97438 * 25 24 23 27 27 N 1.28773 * 109.92438 * 0.02562 * 26 25 24 28 28 C 1.39028 * 120.15737 * 0.27551 * 22 21 20 29 29 C 1.37741 * 120.08053 * 359.45067 * 28 22 21 30 30 H 1.08999 * 109.47292 * 300.00265 * 1 2 3 31 31 H 1.09000 * 109.47156 * 60.00754 * 1 2 3 32 32 H 1.09004 * 109.46932 * 180.02562 * 1 2 3 33 33 H 1.09001 * 115.55235 * 274.32943 * 4 2 1 34 34 H 1.09004 * 117.49664 * 0.02562 * 5 4 2 35 35 H 1.08997 * 117.50340 * 145.02022 * 5 4 2 36 36 H 1.09000 * 117.49766 * 252.51492 * 6 5 4 37 37 H 1.08999 * 117.52338 * 107.47487 * 6 5 4 38 38 H 1.08998 * 109.47149 * 29.99731 * 8 7 2 39 39 H 1.08994 * 109.47331 * 150.00269 * 8 7 2 40 40 H 0.97002 * 120.00072 * 180.02562 * 12 11 9 41 41 H 1.07998 * 120.04326 * 359.95314 * 20 19 17 42 42 H 1.07994 * 119.96016 * 180.02562 * 21 20 19 43 43 H 1.08004 * 126.61707 * 359.69282 * 24 23 22 44 44 H 1.08004 * 125.49154 * 179.97438 * 25 24 23 45 45 H 1.08003 * 119.95341 * 179.70518 * 28 22 21 46 46 H 1.07997 * 120.03563 * 180.27569 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.0741 0.0050 -2.1117 6 6 1.6358 -0.1496 -2.6096 7 7 2.0183 -0.6906 1.1962 8 6 1.7106 -2.1082 1.4005 9 6 0.4166 -2.2366 2.1622 10 1 -0.1225 -1.3509 2.4643 11 6 -0.0787 -3.4850 2.4744 12 7 0.5784 -4.5636 2.1079 13 14 -1.6823 -3.6442 3.4192 14 1 -2.2201 -2.2915 3.7129 15 1 -2.6647 -4.4016 2.6028 16 1 -1.4365 -4.3660 4.6935 17 6 2.7506 -0.0217 2.1087 18 8 3.2505 -0.6182 3.0427 19 6 2.9461 1.4360 1.9740 20 6 4.2163 1.9910 2.1463 21 6 4.3949 3.3509 2.0194 22 6 3.3128 4.1708 1.7197 23 7 3.4981 5.5519 1.5910 24 6 2.5439 6.4816 1.3028 25 6 3.1633 7.6805 1.2773 26 7 4.4589 7.5060 1.5410 27 7 4.7032 6.2565 1.7339 28 6 2.0462 3.6225 1.5527 29 6 1.8612 2.2628 1.6726 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 2.1267 -1.8045 -1.1641 34 1 3.3915 0.9966 -1.7889 35 1 3.8416 -0.6002 -2.5941 36 1 1.4568 -0.8568 -3.4196 37 1 1.0061 0.7401 -2.6146 38 1 1.6135 -2.6020 0.4336 39 1 2.5144 -2.5763 1.9685 40 1 0.2299 -5.4419 2.3272 41 1 5.0574 1.3548 2.3791 42 1 5.3767 3.7807 2.1520 43 1 1.4953 6.2945 1.1242 44 1 2.6865 8.6284 1.0759 45 1 1.2071 4.2631 1.3246 46 1 0.8778 1.8372 1.5383 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095445101.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:42 Heat of formation + Delta-G solvation = 109.924361 kcal Electronic energy + Delta-G solvation = -29413.607240 eV Core-core repulsion = 25499.180236 eV Total energy + Delta-G solvation = -3914.427004 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.20821 -41.57994 -39.73298 -38.73045 -36.24568 -35.59602 -34.61455 -32.63015 -31.68707 -31.27787 -31.04877 -29.18620 -26.23841 -25.04978 -24.84613 -24.42169 -23.10372 -22.81074 -22.20231 -21.40403 -20.24636 -19.55455 -18.74422 -18.54527 -17.28784 -16.88737 -16.56025 -16.51577 -16.34329 -16.04598 -15.85927 -15.32403 -15.23942 -14.98407 -14.68133 -14.66525 -14.29037 -14.08785 -13.85350 -13.70417 -13.32689 -13.25365 -13.07939 -12.94085 -12.74517 -12.55447 -12.29932 -12.27708 -12.21167 -12.11209 -12.00053 -11.76337 -11.63259 -11.21397 -10.97393 -10.70869 -10.60408 -10.40990 -10.20907 -9.61499 -9.40633 -8.18965 -6.31147 -0.74128 0.12449 0.61192 1.07917 1.37861 1.40653 1.51373 1.57694 1.77288 2.16151 2.41492 2.57195 2.97474 3.11802 3.29697 3.48882 3.55365 3.70609 3.72273 3.89297 4.02423 4.05025 4.15826 4.17417 4.23788 4.28150 4.37491 4.49637 4.56860 4.58660 4.78271 4.80764 4.82406 4.95512 5.00663 5.05792 5.11220 5.12509 5.18007 5.23960 5.28715 5.32544 5.35217 5.37753 5.58302 5.64888 5.80766 5.85708 6.09373 6.68760 6.78139 7.08356 7.24552 7.41502 8.88991 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014044 B = 0.003050 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.300148 B = 9177.032089 C = 9813.047337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.161 3.839 3 H 0.112 0.888 4 C -0.190 4.190 5 C -0.175 4.175 6 C -0.146 4.146 7 N -0.580 5.580 8 C 0.263 3.737 9 C -0.524 4.524 10 H 0.062 0.938 11 C 0.006 3.994 12 N -0.932 5.932 13 Si 0.963 3.037 14 H -0.261 1.261 15 H -0.273 1.273 16 H -0.288 1.288 17 C 0.539 3.461 18 O -0.592 6.592 19 C -0.125 4.125 20 C -0.056 4.056 21 C -0.112 4.112 22 C 0.149 3.851 23 N -0.323 5.323 24 C 0.041 3.959 25 C -0.079 4.079 26 N -0.264 5.264 27 N -0.112 5.112 28 C -0.106 4.106 29 C -0.066 4.066 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.026 0.974 39 H -0.008 1.008 40 H 0.264 0.736 41 H 0.133 0.867 42 H 0.146 0.854 43 H 0.247 0.753 44 H 0.225 0.775 45 H 0.187 0.813 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.326 22.848 -9.702 24.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.058 3.942 3 H 0.129 0.871 4 C -0.209 4.209 5 C -0.212 4.212 6 C -0.183 4.183 7 N -0.309 5.309 8 C 0.143 3.857 9 C -0.563 4.563 10 H 0.080 0.920 11 C -0.193 4.193 12 N -0.572 5.572 13 Si 0.788 3.212 14 H -0.184 1.184 15 H -0.198 1.198 16 H -0.214 1.214 17 C 0.328 3.672 18 O -0.475 6.475 19 C -0.129 4.129 20 C -0.076 4.076 21 C -0.132 4.132 22 C 0.056 3.944 23 N -0.105 5.105 24 C -0.109 4.109 25 C -0.235 4.235 26 N -0.132 5.132 27 N -0.089 5.089 28 C -0.126 4.126 29 C -0.085 4.085 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.137 0.863 38 H 0.044 0.956 39 H 0.010 0.990 40 H 0.073 0.927 41 H 0.151 0.849 42 H 0.163 0.837 43 H 0.263 0.737 44 H 0.242 0.758 45 H 0.204 0.796 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.546 22.286 -8.952 24.023 hybrid contribution -1.185 -1.364 0.704 1.939 sum -1.731 20.922 -8.247 22.555 Atomic orbital electron populations 1.22145 0.93573 1.02964 1.02443 1.21084 0.95391 0.95891 0.81786 0.87061 1.22554 1.06636 0.98916 0.92778 1.23060 0.93047 1.01786 1.03340 1.23011 0.97214 1.03396 0.94724 1.48169 1.49870 1.11981 1.20877 1.18724 0.94579 0.76713 0.95727 1.21684 1.06682 0.92483 1.35440 0.91978 1.25825 1.01150 0.95415 0.96872 1.70075 1.40708 0.98366 1.48041 0.85435 0.79199 0.78583 0.78031 1.18438 1.19810 1.21426 1.18865 0.78349 0.87789 0.82189 1.90743 1.51402 1.70656 1.34650 1.20065 0.96242 0.92217 1.04412 1.21032 0.96236 0.94476 0.95845 1.20829 0.99335 0.92124 1.00889 1.17816 0.95689 0.78598 1.02258 1.48112 1.08828 1.06194 1.47328 1.24524 0.98895 0.87858 0.99609 1.23998 0.88988 1.01281 1.09193 1.74331 1.18272 1.09153 1.11457 1.82164 1.03640 0.98163 1.24895 1.21094 0.95311 0.94849 1.01391 1.21455 0.98814 0.92718 0.95502 0.92377 0.88761 0.93363 0.90457 0.87948 0.89098 0.88235 0.86268 0.95567 0.98998 0.92682 0.84909 0.83665 0.73683 0.75828 0.79597 0.82761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 8.04 71.98 0.58 -3.64 16 2 C 0.16 4.75 2.01 44.99 0.09 4.84 16 3 H 0.11 2.64 4.46 -2.39 -0.01 2.63 16 4 C -0.19 -5.45 5.14 -10.79 -0.06 -5.50 16 5 C -0.18 -3.92 10.18 30.59 0.31 -3.60 16 6 C -0.15 -2.90 9.74 30.59 0.30 -2.60 16 7 N -0.58 -23.85 2.39 -805.72 -1.92 -25.77 16 8 C 0.26 13.83 4.69 85.63 0.40 14.24 16 9 C -0.52 -28.66 7.83 25.60 0.20 -28.46 16 10 H 0.06 3.28 7.61 -2.91 -0.02 3.26 16 11 C 0.01 0.33 5.46 84.65 0.46 0.79 16 12 N -0.93 -55.66 13.29 21.45 0.28 -55.38 16 13 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 14 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 16 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 17 C 0.54 22.62 7.22 86.74 0.63 23.25 16 18 O -0.59 -31.24 16.54 -3.94 -0.07 -31.31 16 19 C -0.13 -3.74 4.94 -20.08 -0.10 -3.84 16 20 C -0.06 -1.52 9.68 22.50 0.22 -1.30 16 21 C -0.11 -2.50 9.66 22.34 0.22 -2.29 16 22 C 0.15 2.78 6.70 38.23 0.26 3.04 16 23 N -0.32 -5.87 3.85 -187.12 -0.72 -6.59 16 24 C 0.04 0.40 10.92 83.24 0.91 1.31 16 25 C -0.08 -0.99 11.86 83.71 0.99 0.01 16 26 N -0.26 -5.88 12.33 -58.72 -0.72 -6.60 16 27 N -0.11 -2.74 13.15 37.02 0.49 -2.25 16 28 C -0.11 -1.51 9.46 22.34 0.21 -1.30 16 29 C -0.07 -1.39 7.38 22.50 0.17 -1.22 16 30 H 0.06 1.53 6.77 -2.39 -0.02 1.52 16 31 H 0.09 1.79 7.29 -2.39 -0.02 1.77 16 32 H 0.05 1.71 6.92 -2.38 -0.02 1.70 16 33 H 0.08 2.82 6.43 -2.39 -0.02 2.80 16 34 H 0.10 2.03 8.05 -2.38 -0.02 2.01 16 35 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.12 1.76 7.61 -2.39 -0.02 1.74 16 38 H 0.03 1.42 6.25 -2.39 -0.01 1.41 16 39 H -0.01 -0.51 7.34 -2.39 -0.02 -0.52 16 40 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 41 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 42 H 0.15 3.17 7.72 -2.91 -0.02 3.15 16 43 H 0.25 -0.36 7.16 -2.91 -0.02 -0.39 16 44 H 0.23 0.90 8.06 -2.91 -0.02 0.87 16 45 H 0.19 0.81 6.82 -2.91 -0.02 0.79 16 46 H 0.15 3.07 5.45 -2.91 -0.02 3.06 16 Total: -1.00 -81.31 379.90 6.17 -75.15 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 1.02 Total: 13.39 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 5.78 Total: -6.29 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -2.60 Total: -96.59 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.07 Total: -31.31 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -81.31 6.17 -75.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095445101.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.070 kcal (2) G-P(sol) polarization free energy of solvation -81.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds