Wall clock time and date at job start Tue Mar 31 2020 06:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34773 * 119.99861 * 2 1 4 4 O 1.21606 * 120.00436 * 359.97438 * 3 2 1 5 5 C 1.47428 * 119.99923 * 180.02562 * 3 2 1 6 6 C 1.39974 * 120.61128 * 353.94150 * 5 3 2 7 7 C 1.38333 * 118.37324 * 179.97438 * 6 5 3 8 8 C 1.38380 * 119.50317 * 359.97438 * 7 6 5 9 9 N 1.31842 * 121.22213 * 0.02562 * 8 7 6 10 10 C 1.32435 * 121.77238 * 0.02562 * 9 8 7 11 11 N 1.38267 * 119.82510 * 180.02562 * 10 9 8 12 12 C 1.46503 * 119.99980 * 5.63297 * 11 10 9 13 13 C 1.53001 * 109.47032 * 180.02562 * 12 11 10 14 14 O 1.42895 * 109.47419 * 65.00078 * 13 12 11 15 15 C 1.35672 * 117.00099 * 179.97438 * 14 13 12 16 16 C 1.39314 * 119.81928 * 359.73043 * 15 14 13 17 17 C 1.36435 * 120.18515 * 179.76161 * 16 15 14 18 18 C 1.40834 * 119.81059 * 0.50825 * 17 16 15 19 19 C 1.41215 * 120.18018 * 179.72468 * 18 17 16 20 20 H 1.08001 * 120.00126 * 214.56141 * 19 18 17 21 21 C 1.39895 * 120.00115 * 34.55572 * 19 18 17 22 22 N 1.30877 * 119.99636 * 356.13700 * 21 19 18 23 23 Si 1.86793 * 120.00078 * 176.13212 * 21 19 18 24 24 H 1.48506 * 109.47066 * 60.00315 * 23 21 19 25 25 H 1.48499 * 109.47124 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47291 * 300.00540 * 23 21 19 27 27 C 1.40829 * 119.64379 * 359.73923 * 18 17 16 28 28 C 1.36441 * 119.81292 * 0.02562 * 27 18 17 29 29 H 1.09002 * 109.46766 * 299.99309 * 1 2 3 30 30 H 1.08987 * 109.47369 * 59.99821 * 1 2 3 31 31 H 1.09006 * 109.47013 * 180.02562 * 1 2 3 32 32 H 0.97007 * 120.00099 * 180.02562 * 2 1 3 33 33 H 1.07999 * 120.81401 * 359.95856 * 6 5 3 34 34 H 1.07994 * 120.24814 * 179.97438 * 7 6 5 35 35 H 1.08003 * 119.39307 * 179.72423 * 8 7 6 36 36 H 0.97000 * 120.00148 * 185.64205 * 11 10 9 37 37 H 1.08996 * 109.47361 * 300.00390 * 12 11 10 38 38 H 1.09004 * 109.46722 * 60.00534 * 12 11 10 39 39 H 1.08998 * 109.47131 * 185.00755 * 13 12 11 40 40 H 1.09004 * 109.46977 * 305.00007 * 13 12 11 41 41 H 1.07997 * 119.90646 * 0.02562 * 16 15 14 42 42 H 1.08004 * 120.09728 * 180.24899 * 17 16 15 43 43 H 0.97000 * 119.99806 * 179.97438 * 22 21 19 44 44 H 1.08003 * 120.09574 * 179.97438 * 27 18 17 45 45 H 1.07995 * 119.90962 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2204 -0.0005 5 6 3.6131 1.1672 -0.0006 6 6 4.3259 -0.0308 0.1260 7 6 5.7082 0.0229 0.1193 8 6 6.3421 1.2460 -0.0116 9 7 5.6529 2.3638 -0.1297 10 6 4.3286 2.3699 -0.1283 11 7 3.6463 3.5657 -0.2553 12 6 4.3828 4.8054 -0.5144 13 6 3.3986 5.9729 -0.6097 14 8 2.7657 6.1670 0.6567 15 6 1.8578 7.1714 0.7440 16 6 1.5871 7.9596 -0.3724 17 6 0.6719 8.9684 -0.2942 18 6 0.0081 9.2189 0.9224 19 6 -0.9363 10.2648 1.0136 20 1 -1.0322 10.8274 1.9305 21 6 -1.7475 10.5725 -0.0838 22 7 -1.5799 9.9423 -1.2185 23 14 -3.0701 11.8825 0.0705 24 1 -2.4422 13.1801 0.4274 25 1 -3.7862 12.0178 -1.2234 26 1 -4.0336 11.4908 1.1304 27 6 0.2914 8.4208 2.0476 28 6 1.2058 7.4127 1.9513 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8898 31 1 -0.3633 -1.0277 0.0005 32 1 1.9501 -0.8401 -0.0004 33 1 3.8094 -0.9739 0.2268 34 1 6.2883 -0.8829 0.2154 35 1 7.4214 1.2864 -0.0121 36 1 2.6800 3.5840 -0.1727 37 1 5.0848 4.9878 0.2992 38 1 4.9300 4.7135 -1.4527 39 1 3.9358 6.8790 -0.8901 40 1 2.6430 5.7507 -1.3633 41 1 2.0999 7.7687 -1.3034 42 1 0.4602 9.5760 -1.1617 43 1 -2.1426 10.1553 -1.9793 44 1 -0.2131 8.6067 2.9843 45 1 1.4245 6.8000 2.8133 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095961988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:59 Heat of formation + Delta-G solvation = -5.792700 kcal Electronic energy + Delta-G solvation = -28233.419722 eV Core-core repulsion = 24216.256187 eV Total energy + Delta-G solvation = -4017.163535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.89546 -39.06493 -38.83068 -36.76764 -35.75111 -34.68895 -33.21917 -32.70534 -31.25110 -29.62441 -29.16571 -28.23602 -26.91798 -24.81734 -24.46897 -23.21236 -22.16036 -21.05765 -20.81936 -20.12150 -18.40144 -17.76650 -17.31558 -17.04886 -16.88206 -15.86007 -15.59021 -15.40451 -15.18424 -15.02896 -14.60888 -14.49586 -14.18210 -13.92117 -13.78028 -13.27316 -13.18156 -12.98400 -12.80253 -12.71447 -12.49299 -12.31543 -12.15870 -11.68061 -11.43012 -11.16197 -11.01898 -10.95781 -10.57951 -10.42454 -10.28550 -10.00937 -9.82996 -9.72208 -9.54916 -9.42321 -9.27282 -9.03995 -7.78058 -7.60905 -6.82080 -6.54122 -4.25107 0.60966 1.29232 2.72993 2.83120 2.91583 3.01751 3.12701 3.15343 3.25108 3.29632 3.78399 4.03400 4.08129 4.28263 4.43568 4.61242 4.75096 4.85678 4.96278 5.04947 5.12980 5.29734 5.33737 5.40058 5.59791 5.60830 5.65644 5.69215 5.73477 5.88920 5.99887 6.07869 6.16004 6.29547 6.33287 6.74750 6.92319 7.08356 7.14190 7.22159 7.37386 7.40305 7.46581 7.63165 7.93201 7.96252 8.07211 8.23736 8.27909 8.49291 8.71542 8.99890 9.05015 10.38946 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.002259 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.852402 B =12392.443346 C =13464.818658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.732 5.732 3 C 0.570 3.430 4 O -0.534 6.534 5 C -0.276 4.276 6 C 0.006 3.994 7 C -0.259 4.259 8 C 0.186 3.814 9 N -0.549 5.549 10 C 0.458 3.542 11 N -0.687 5.687 12 C 0.127 3.873 13 C 0.054 3.946 14 O -0.325 6.325 15 C 0.007 3.993 16 C -0.183 4.183 17 C -0.120 4.120 18 C 0.079 3.921 19 C -0.466 4.466 20 H 0.073 0.927 21 C 0.069 3.931 22 N -0.820 5.820 23 Si 0.914 3.086 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.267 1.267 27 C -0.183 4.183 28 C -0.122 4.122 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.400 0.600 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.158 0.842 36 H 0.431 0.569 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.132 0.868 43 H 0.276 0.724 44 H 0.100 0.900 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.175 -22.021 -1.399 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.383 5.383 3 C 0.360 3.640 4 O -0.412 6.412 5 C -0.288 4.288 6 C -0.021 4.021 7 C -0.283 4.283 8 C 0.024 3.976 9 N -0.267 5.267 10 C 0.217 3.783 11 N -0.327 5.327 12 C 0.003 3.997 13 C -0.023 4.023 14 O -0.241 6.241 15 C -0.036 4.036 16 C -0.202 4.202 17 C -0.139 4.139 18 C 0.077 3.923 19 C -0.497 4.497 20 H 0.092 0.908 21 C -0.145 4.145 22 N -0.449 5.449 23 Si 0.740 3.260 24 H -0.192 1.192 25 H -0.205 1.205 26 H -0.192 1.192 27 C -0.202 4.202 28 C -0.141 4.141 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.234 0.766 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.176 0.824 36 H 0.283 0.717 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.149 0.851 43 H 0.087 0.913 44 H 0.119 0.881 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.036 -20.337 -1.616 23.195 hybrid contribution -1.212 -0.702 -0.141 1.408 sum 9.825 -21.039 -1.757 23.286 Atomic orbital electron populations 1.21583 0.78940 1.02229 1.02953 1.45555 1.07940 1.08253 1.76596 1.18002 0.86666 0.83798 0.75577 1.90534 1.69335 1.30544 1.50807 1.19990 0.93198 0.94207 1.21392 1.21391 0.94382 0.96168 0.90134 1.21655 0.94652 0.99664 1.12282 1.22685 0.99945 0.86982 0.88032 1.67424 1.05746 1.31243 1.22329 1.18366 0.87969 0.85729 0.86284 1.45736 1.12073 1.03314 1.71547 1.21464 0.94156 0.82088 1.01995 1.22724 0.95416 0.97143 0.87016 1.85854 1.54862 1.51665 1.31701 1.18655 0.96675 0.92822 0.95422 1.20692 1.03295 1.00190 0.96006 1.21230 0.94633 0.98064 0.99992 1.17634 0.91321 0.92324 0.90984 1.19368 1.16649 1.14969 0.98750 0.90834 1.25826 0.98186 0.95954 0.94514 1.69748 1.36092 1.37157 1.01857 0.86275 0.80596 0.81024 0.78138 1.19166 1.20550 1.19217 1.20738 1.02205 0.97804 0.99481 1.19626 0.99611 1.00320 0.94550 0.91805 0.91871 0.90615 0.76602 0.85100 0.84770 0.82436 0.71702 0.90493 0.90206 0.91222 0.92384 0.88690 0.85073 0.91278 0.88147 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 10.70 59.85 0.64 1.34 16 2 N -0.73 -6.47 5.67 -68.18 -0.39 -6.86 16 3 C 0.57 7.47 7.75 -12.52 -0.10 7.37 16 4 O -0.53 -9.27 13.68 5.27 0.07 -9.20 16 5 C -0.28 -3.34 5.91 -104.65 -0.62 -3.96 16 6 C 0.01 0.05 9.62 -38.90 -0.37 -0.33 16 7 C -0.26 -1.92 10.09 -39.49 -0.40 -2.32 16 8 C 0.19 1.68 11.16 -17.49 -0.20 1.48 16 9 N -0.55 -6.99 9.55 -12.20 -0.12 -7.11 16 10 C 0.46 6.49 7.48 -155.18 -1.16 5.33 16 11 N -0.69 -10.90 5.52 -60.22 -0.33 -11.23 16 12 C 0.13 1.86 6.07 -4.04 -0.02 1.83 16 13 C 0.05 0.90 4.86 37.16 0.18 1.09 16 14 O -0.32 -6.93 10.07 -18.72 -0.19 -7.11 16 15 C 0.01 0.18 6.71 -38.78 -0.26 -0.08 16 16 C -0.18 -4.44 8.96 -39.83 -0.36 -4.79 16 17 C -0.12 -3.20 8.62 -39.25 -0.34 -3.54 16 18 C 0.08 2.19 5.55 -106.81 -0.59 1.59 16 19 C -0.47 -12.75 9.03 -37.83 -0.34 -13.09 16 20 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 21 C 0.07 1.80 5.42 -17.34 -0.09 1.70 16 22 N -0.82 -22.02 10.60 55.55 0.59 -21.43 16 23 Si 0.91 19.55 29.56 -169.99 -5.03 14.52 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 27 C -0.18 -4.66 9.74 -39.25 -0.38 -5.05 16 28 C -0.12 -2.98 9.92 -39.83 -0.40 -3.37 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.59 8.14 -51.94 -0.42 0.16 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.40 2.11 6.97 -40.82 -0.28 1.82 16 33 H 0.13 0.58 6.56 -52.49 -0.34 0.23 16 34 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 35 H 0.16 0.91 8.06 -52.48 -0.42 0.48 16 36 H 0.43 7.75 4.98 -40.91 -0.20 7.55 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.08 7.63 -51.93 -0.40 0.69 16 40 H 0.06 1.00 7.66 -51.93 -0.40 0.61 16 41 H 0.10 2.04 6.27 -52.49 -0.33 1.71 16 42 H 0.13 3.62 6.13 -52.48 -0.32 3.30 16 43 H 0.28 6.83 8.30 -40.82 -0.34 6.50 16 44 H 0.10 2.38 8.06 -52.48 -0.42 1.95 16 45 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 378.86 15.07 5.71 5.71 Total: -1.00 -33.47 378.86 -10.12 -43.58 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -5.63 Total: 13.91 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -4.81 Total: -14.78 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.25 Total: -46.62 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.12 Total: -16.31 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.47 -10.12 -43.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095961988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.792 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds