Wall clock time and date at job start Tue Mar 31 2020 06:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46989 * 2 1 4 4 O 1.42895 * 109.47468 * 120.00270 * 2 1 3 5 5 C 1.50697 * 109.47133 * 240.00345 * 2 1 3 6 6 O 1.21286 * 120.00072 * 244.99918 * 5 2 1 7 7 N 1.34782 * 120.00093 * 64.99640 * 5 2 1 8 8 C 1.39922 * 119.99657 * 175.55174 * 7 5 2 9 9 C 1.38892 * 120.07423 * 27.96462 * 8 7 5 10 10 C 1.38092 * 119.93031 * 180.02562 * 9 8 7 11 11 C 1.38311 * 120.06919 * 0.02562 * 10 9 8 12 12 C 1.38264 * 120.13906 * 359.67824 * 11 10 9 13 13 C 1.38125 * 120.06969 * 0.59454 * 12 11 10 14 14 C 1.50708 * 120.03441 * 179.69652 * 13 12 11 15 15 O 1.42896 * 109.46802 * 359.73238 * 14 13 12 16 16 C 1.35680 * 116.99999 * 179.97438 * 15 14 13 17 17 C 1.39306 * 119.81979 * 179.97438 * 16 15 14 18 18 C 1.36442 * 120.18612 * 180.25254 * 17 16 15 19 19 C 1.40832 * 119.80588 * 359.46424 * 18 17 16 20 20 C 1.41221 * 120.17707 * 180.24729 * 19 18 17 21 21 H 1.07996 * 120.00398 * 208.25194 * 20 19 18 22 22 C 1.39893 * 119.99848 * 28.25690 * 20 19 18 23 23 N 1.30880 * 119.99933 * 12.18586 * 22 20 19 24 24 Si 1.86797 * 120.00181 * 192.18714 * 22 20 19 25 25 H 1.48498 * 109.46682 * 60.00084 * 24 22 20 26 26 H 1.48498 * 109.47012 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46954 * 300.00132 * 24 22 20 28 28 C 1.40830 * 119.64393 * 0.53482 * 19 18 17 29 29 C 1.36432 * 119.81474 * 359.73878 * 28 19 18 30 30 H 1.09003 * 109.46989 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47478 * 299.99716 * 1 2 3 32 32 H 1.09001 * 109.47372 * 59.99810 * 1 2 3 33 33 H 0.96707 * 113.99890 * 59.99497 * 4 2 1 34 34 H 0.97000 * 119.99713 * 355.55497 * 7 5 2 35 35 H 1.07999 * 120.03653 * 0.04495 * 9 8 7 36 36 H 1.07997 * 119.96689 * 179.97438 * 10 9 8 37 37 H 1.07995 * 119.92620 * 179.97438 * 11 10 9 38 38 H 1.07995 * 119.96087 * 180.32021 * 12 11 10 39 39 H 1.09000 * 109.47123 * 239.72868 * 14 13 12 40 40 H 1.09006 * 109.46802 * 119.72885 * 14 13 12 41 41 H 1.08007 * 119.90615 * 359.97438 * 17 16 15 42 42 H 1.07996 * 120.09569 * 179.70839 * 18 17 16 43 43 H 0.96997 * 120.00407 * 179.97438 * 23 22 20 44 44 H 1.08004 * 120.09425 * 179.71195 * 28 19 18 45 45 H 1.07998 * 119.91376 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0323 -0.7103 -1.2305 6 8 2.6530 -1.7466 -1.1216 7 7 1.7918 -0.1940 -2.4521 8 6 2.3368 -0.8023 -3.5882 9 6 2.6065 -2.1647 -3.5867 10 6 3.1448 -2.7618 -4.7094 11 6 3.4159 -2.0045 -5.8345 12 6 3.1429 -0.6491 -5.8414 13 6 2.6097 -0.0448 -4.7196 14 6 2.3188 1.4339 -4.7256 15 8 2.6831 1.9858 -5.9923 16 6 2.4831 3.3167 -6.1648 17 6 2.8181 3.9161 -7.3768 18 6 2.6250 5.2548 -7.5566 19 6 2.0749 6.0286 -6.5165 20 6 1.8668 7.4138 -6.6959 21 1 1.8923 8.0784 -5.8451 22 6 1.6275 7.9251 -7.9759 23 7 1.3596 7.1120 -8.9658 24 14 1.6905 9.7684 -8.2722 25 1 3.0420 10.2790 -7.9287 26 1 1.4040 10.0500 -9.7018 27 1 0.6761 10.4413 -7.4216 28 6 1.7390 5.4147 -5.2943 29 6 1.9437 4.0760 -5.1288 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.7210 -1.5953 1.2328 34 1 1.2410 0.5991 -2.5435 35 1 2.3951 -2.7567 -2.7084 36 1 3.3552 -3.8211 -4.7087 37 1 3.8373 -2.4737 -6.7112 38 1 3.3509 -0.0614 -6.7232 39 1 2.8942 1.9206 -3.9381 40 1 1.2550 1.5955 -4.5512 41 1 3.2360 3.3203 -8.1749 42 1 2.8896 5.7189 -8.4952 43 1 1.1933 7.4665 -9.8532 44 1 1.3210 6.0021 -4.4901 45 1 1.6871 3.6037 -4.1921 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095979912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:29 Heat of formation + Delta-G solvation = -76.657447 kcal Electronic energy + Delta-G solvation = -28276.556378 eV Core-core repulsion = 24224.027166 eV Total energy + Delta-G solvation = -4052.529212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.11572 -39.37710 -38.52673 -36.96527 -36.42416 -35.17809 -33.42186 -31.96653 -31.60993 -29.84027 -29.49220 -29.02163 -26.48250 -25.09064 -24.78241 -22.92831 -21.87420 -20.85380 -20.67877 -20.44663 -18.69281 -17.66713 -17.38209 -17.02384 -16.67531 -16.09163 -15.88584 -15.45853 -15.23260 -14.88817 -14.80335 -14.39861 -14.22969 -14.04438 -13.83343 -13.22811 -13.12121 -12.88705 -12.84988 -12.63347 -12.35794 -12.23106 -12.10879 -11.88957 -11.63018 -11.49537 -11.23822 -11.17042 -11.07937 -10.90008 -10.74581 -10.61422 -10.08484 -9.89236 -9.76875 -9.39938 -9.13425 -8.74620 -8.20965 -7.71609 -7.05658 -6.73033 -4.32906 1.11567 1.39062 2.18313 2.61760 2.73786 2.87892 3.05852 3.08366 3.16957 3.73735 3.77206 3.86122 3.93181 4.14840 4.40182 4.53758 4.59794 4.78323 5.02583 5.04775 5.09588 5.21850 5.27151 5.35382 5.46264 5.49172 5.53448 5.58548 5.61292 5.94318 6.00730 6.12382 6.21242 6.25699 6.44842 6.52706 6.67718 6.91231 6.93506 6.96938 7.04678 7.12309 7.13981 7.39399 7.49485 7.67065 7.70492 7.95142 8.14715 8.36458 8.58914 8.85859 8.92049 10.21904 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.002345 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.369014 B =11939.751313 C =13659.803873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.091 3.909 3 H 0.130 0.870 4 O -0.536 6.536 5 C 0.485 3.515 6 O -0.513 6.513 7 N -0.665 5.665 8 C 0.144 3.856 9 C -0.131 4.131 10 C -0.107 4.107 11 C -0.136 4.136 12 C -0.076 4.076 13 C -0.109 4.109 14 C 0.111 3.889 15 O -0.320 6.320 16 C -0.006 4.006 17 C -0.120 4.120 18 C -0.127 4.127 19 C 0.089 3.911 20 C -0.464 4.464 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.805 5.805 24 Si 0.910 3.090 25 H -0.265 1.265 26 H -0.279 1.279 27 H -0.267 1.267 28 C -0.194 4.194 29 C -0.169 4.169 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.384 0.616 34 H 0.412 0.588 35 H 0.147 0.853 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.139 0.861 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.127 0.873 43 H 0.280 0.720 44 H 0.095 0.905 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.929 -14.687 11.025 18.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.028 3.972 3 H 0.148 0.852 4 O -0.341 6.341 5 C 0.272 3.728 6 O -0.389 6.389 7 N -0.311 5.311 8 C 0.050 3.950 9 C -0.151 4.151 10 C -0.126 4.126 11 C -0.154 4.154 12 C -0.094 4.094 13 C -0.111 4.111 14 C 0.034 3.966 15 O -0.236 6.236 16 C -0.049 4.049 17 C -0.139 4.139 18 C -0.147 4.147 19 C 0.086 3.914 20 C -0.494 4.494 21 H 0.094 0.906 22 C -0.143 4.143 23 N -0.432 5.432 24 Si 0.735 3.265 25 H -0.189 1.189 26 H -0.204 1.204 27 H -0.191 1.191 28 C -0.214 4.214 29 C -0.188 4.188 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.233 0.767 34 H 0.248 0.752 35 H 0.165 0.835 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.157 0.843 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.145 0.855 43 H 0.091 0.909 44 H 0.113 0.887 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.209 -14.947 10.927 18.555 hybrid contribution -0.730 0.870 -0.286 1.171 sum -1.939 -14.078 10.641 17.753 Atomic orbital electron populations 1.22492 0.93554 1.03782 1.04373 1.21857 0.94731 0.97539 0.83034 0.85214 1.86633 1.77453 1.29930 1.40100 1.21905 0.79646 0.86033 0.85212 1.90670 1.39212 1.22820 1.86148 1.43552 1.51016 1.31515 1.05026 1.17479 0.99574 0.91992 0.85993 1.21388 1.01353 0.92611 0.99751 1.21075 0.98853 0.99833 0.92824 1.21208 1.01515 0.94176 0.98536 1.20933 0.96171 0.94397 0.97926 1.19539 1.02855 0.94387 0.94355 1.20998 0.98975 0.89268 0.87317 1.85790 1.82585 1.22392 1.32816 1.18582 1.09302 0.80814 0.96234 1.19845 1.04552 0.95240 0.94250 1.21029 1.00985 0.91746 1.00904 1.17605 0.89400 0.93594 0.90766 1.19431 1.43668 0.92844 0.93501 0.90647 1.25863 0.92489 1.00255 0.95708 1.69784 1.34564 1.36898 1.01970 0.86335 0.79804 0.82479 0.77873 1.18939 1.20384 1.19129 1.20600 1.08093 0.93243 0.99480 1.20370 1.06004 0.95570 0.96872 0.91448 0.89923 0.90676 0.76694 0.75172 0.83543 0.85889 0.85886 0.84273 0.91901 0.92208 0.88385 0.85494 0.90892 0.88669 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.94 9.48 37.16 0.35 -0.58 16 2 C 0.09 0.68 4.00 -27.89 -0.11 0.57 16 3 H 0.13 0.83 8.14 -51.93 -0.42 0.40 16 4 O -0.54 -4.76 12.99 -55.09 -0.72 -5.47 16 5 C 0.48 4.98 7.05 -10.98 -0.08 4.90 16 6 O -0.51 -6.87 13.35 -14.31 -0.19 -7.07 16 7 N -0.67 -6.70 5.09 -9.86 -0.05 -6.75 16 8 C 0.14 1.83 6.40 -83.69 -0.54 1.30 16 9 C -0.13 -1.66 8.77 -39.39 -0.35 -2.01 16 10 C -0.11 -1.23 10.04 -39.61 -0.40 -1.63 16 11 C -0.14 -1.61 10.04 -39.54 -0.40 -2.00 16 12 C -0.08 -1.05 9.37 -39.61 -0.37 -1.42 16 13 C -0.11 -1.52 5.90 -104.43 -0.62 -2.14 16 14 C 0.11 1.66 4.12 36.01 0.15 1.80 16 15 O -0.32 -6.10 8.60 -18.74 -0.16 -6.26 16 16 C -0.01 -0.14 6.71 -38.78 -0.26 -0.40 16 17 C -0.12 -2.79 9.92 -39.83 -0.40 -3.19 16 18 C -0.13 -3.22 8.61 -39.25 -0.34 -3.56 16 19 C 0.09 2.29 5.55 -106.80 -0.59 1.70 16 20 C -0.46 -12.02 9.05 -37.83 -0.34 -12.37 16 21 H 0.08 1.87 7.87 -52.49 -0.41 1.46 16 22 C 0.07 1.80 5.23 -17.34 -0.09 1.71 16 23 N -0.81 -20.51 10.88 55.54 0.60 -19.91 16 24 Si 0.91 18.43 29.58 -169.99 -5.03 13.40 16 25 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 27 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 28 C -0.19 -4.56 9.74 -39.25 -0.38 -4.94 16 29 C -0.17 -3.59 8.96 -39.83 -0.36 -3.95 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.32 7.79 -51.93 -0.40 -0.09 16 33 H 0.38 2.40 8.79 45.56 0.40 2.80 16 34 H 0.41 3.18 7.39 -40.82 -0.30 2.88 16 35 H 0.15 1.89 5.69 -52.49 -0.30 1.59 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.14 2.01 7.00 -52.49 -0.37 1.65 16 39 H 0.06 0.91 7.65 -51.93 -0.40 0.52 16 40 H 0.06 0.82 7.37 -51.93 -0.38 0.44 16 41 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 42 H 0.13 3.31 6.23 -52.49 -0.33 2.98 16 43 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 44 H 0.10 2.08 8.06 -52.48 -0.42 1.65 16 45 H 0.09 1.62 6.27 -52.49 -0.33 1.29 16 LS Contribution 377.74 15.07 5.69 5.69 Total: -1.00 -30.93 377.74 -9.87 -40.81 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -4.91 Total: 11.77 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -5.11 Total: -26.21 kcal Atomic # 7 Polarization: -27.21 SS G_CDS: 0.55 Total: -26.66 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -1.07 Total: -18.80 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.93 -9.87 -40.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095979912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.849 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds