Wall clock time and date at job start Tue Mar 31 2020 05:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46793 * 2 1 4 4 H 1.08998 * 109.47569 * 55.00250 * 3 2 1 5 5 C 1.53005 * 109.46651 * 175.00171 * 3 2 1 6 6 O 1.42899 * 109.47545 * 294.99986 * 3 2 1 7 7 C 1.35686 * 117.00478 * 150.00398 * 6 3 2 8 8 C 1.38840 * 119.62099 * 180.30110 * 7 6 3 9 9 C 1.39686 * 118.93663 * 180.24581 * 8 7 6 10 10 C 1.47963 * 120.90316 * 179.73419 * 9 8 7 11 11 O 1.21555 * 120.00199 * 26.07655 * 10 9 8 12 12 N 1.34780 * 120.00042 * 206.07679 * 10 9 8 13 13 C 1.36860 * 120.00280 * 182.18068 * 12 10 9 14 14 H 1.08002 * 119.99914 * 223.32564 * 13 12 10 15 15 C 1.39030 * 119.99992 * 43.32277 * 13 12 10 16 16 N 1.31348 * 119.99938 * 25.32266 * 15 13 12 17 17 Si 1.86793 * 119.99945 * 205.32996 * 15 13 12 18 18 H 1.48493 * 109.47539 * 64.99353 * 17 15 13 19 19 H 1.48499 * 109.47195 * 185.00095 * 17 15 13 20 20 H 1.48509 * 109.46741 * 304.99401 * 17 15 13 21 21 C 1.39718 * 119.99895 * 2.17681 * 12 10 9 22 22 C 1.38977 * 120.07982 * 229.67583 * 21 12 10 23 23 C 1.38076 * 119.91860 * 179.74861 * 22 21 12 24 24 C 1.38305 * 120.07966 * 0.24930 * 23 22 21 25 25 C 1.38311 * 120.16091 * 359.97438 * 24 23 22 26 26 C 1.38076 * 120.07832 * 0.02562 * 25 24 23 27 27 C 1.40078 * 118.19551 * 359.46421 * 9 8 7 28 28 C 1.37933 * 119.12312 * 0.26788 * 27 9 8 29 29 N 1.31933 * 120.98585 * 0.02562 * 28 27 9 30 30 H 1.09003 * 109.47719 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47570 * 299.99987 * 1 2 3 32 32 H 1.08999 * 109.47484 * 59.99546 * 1 2 3 33 33 H 1.08999 * 109.46892 * 240.00032 * 2 1 3 34 34 H 1.08995 * 109.47198 * 120.00049 * 2 1 3 35 35 H 1.09001 * 109.46781 * 179.97438 * 5 3 2 36 36 H 1.08990 * 109.47117 * 299.99686 * 5 3 2 37 37 H 1.09004 * 109.47324 * 60.00449 * 5 3 2 38 38 H 1.07999 * 120.53599 * 0.02562 * 8 7 6 39 39 H 0.97000 * 119.99740 * 184.92460 * 16 15 13 40 40 H 1.08004 * 120.04111 * 0.02562 * 22 21 12 41 41 H 1.07997 * 119.95789 * 180.23370 * 23 22 21 42 42 H 1.08001 * 119.92192 * 180.02562 * 24 23 22 43 43 H 1.08001 * 119.95954 * 179.97438 * 25 24 23 44 44 H 1.08002 * 120.03573 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.43886 * 180.25120 * 27 9 8 46 46 H 1.08001 * 119.50799 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 8 1.6619 2.0814 -1.2210 7 6 1.4505 3.4210 -1.1756 8 6 1.0750 4.0959 -2.3294 9 6 0.8661 5.4757 -2.2676 10 6 0.4708 6.2391 -3.4718 11 8 -0.1240 5.6842 -4.3751 12 7 0.7701 7.5498 -3.5672 13 6 0.3654 8.2663 -4.6608 14 1 1.0448 8.9604 -5.1332 15 6 -0.9201 8.1007 -5.1636 16 7 -1.8851 7.6852 -4.3753 17 14 -1.2749 8.4690 -6.9601 18 1 -0.5297 7.5131 -7.8180 19 1 -2.7314 8.3316 -7.2153 20 1 -0.8458 9.8553 -7.2753 21 6 1.4934 8.1770 -2.5496 22 6 1.0375 9.3719 -2.0057 23 6 1.7523 9.9862 -0.9966 24 6 2.9232 9.4165 -0.5307 25 6 3.3824 8.2298 -1.0728 26 6 2.6729 7.6099 -2.0821 27 6 1.0356 6.1161 -1.0333 28 6 1.4048 5.3687 0.0656 29 7 1.5991 4.0674 -0.0321 30 1 -0.3635 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.9281 2.4719 0.1252 36 1 3.8531 0.9570 1.0570 37 1 3.9994 0.9053 -0.7162 38 1 0.9498 3.5633 -3.2605 39 1 -2.7646 7.5011 -4.7409 40 1 0.1229 9.8171 -2.3687 41 1 1.3966 10.9128 -0.5708 42 1 3.4801 9.8990 0.2590 43 1 4.2974 7.7881 -0.7068 44 1 3.0319 6.6830 -2.5047 45 1 0.8796 7.1809 -0.9435 46 1 1.5368 5.8560 1.0204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095990969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:29 Heat of formation + Delta-G solvation = 11.141834 kcal Electronic energy + Delta-G solvation = -29975.725898 eV Core-core repulsion = 26024.722610 eV Total energy + Delta-G solvation = -3951.003287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.75158 -39.64565 -37.93998 -37.52080 -34.49295 -34.19645 -32.72468 -31.60990 -30.58556 -30.08970 -29.53512 -28.71834 -25.81365 -24.24361 -23.58350 -22.85697 -22.19377 -21.71031 -21.01248 -19.76995 -18.31385 -17.51630 -16.80818 -15.90916 -15.73691 -15.57400 -15.40143 -15.12857 -14.63943 -14.35078 -14.16169 -14.05413 -13.76245 -13.69599 -13.60881 -13.21053 -13.03705 -12.79495 -12.72432 -12.54172 -12.26076 -11.87245 -11.82854 -11.70281 -11.26079 -11.18380 -11.15761 -10.93071 -10.88443 -10.71713 -10.61460 -10.52792 -10.40574 -9.47715 -9.35519 -9.19776 -8.64160 -8.54833 -8.48188 -7.93012 -7.17301 -6.45599 -4.16977 1.27152 1.48949 1.92494 2.01278 3.16016 3.21065 3.28427 3.33272 3.76142 4.07935 4.29976 4.45689 4.50568 4.62185 4.68097 4.89586 5.03437 5.07297 5.21431 5.29654 5.35269 5.41347 5.45992 5.47932 5.51258 5.51882 5.57892 5.65961 5.76955 5.81467 5.88622 5.97092 6.01754 6.07624 6.11634 6.14219 6.19675 6.25557 6.42269 6.57415 6.63682 6.73015 6.93810 7.05463 7.16145 7.35211 7.48979 7.54541 8.00952 8.14703 8.62467 8.77279 9.25495 9.78826 10.60926 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.004022 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.773104 B = 6959.472140 C = 8815.335008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C 0.086 3.914 4 H 0.089 0.911 5 C -0.168 4.168 6 O -0.301 6.301 7 C 0.311 3.689 8 C -0.149 4.149 9 C -0.028 4.028 10 C 0.520 3.480 11 O -0.510 6.510 12 N -0.390 5.390 13 C -0.357 4.357 14 H 0.091 0.909 15 C 0.082 3.918 16 N -0.821 5.821 17 Si 0.915 3.085 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.165 3.835 22 C -0.133 4.133 23 C -0.106 4.106 24 C -0.160 4.160 25 C -0.105 4.105 26 C -0.150 4.150 27 C -0.175 4.175 28 C 0.123 3.877 29 N -0.538 5.538 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.144 0.856 39 H 0.273 0.727 40 H 0.130 0.870 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.151 0.849 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.917 -5.858 11.356 15.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C 0.029 3.971 4 H 0.107 0.893 5 C -0.225 4.225 6 O -0.209 6.209 7 C 0.132 3.868 8 C -0.171 4.171 9 C -0.039 4.039 10 C 0.309 3.691 11 O -0.387 6.387 12 N -0.102 5.102 13 C -0.482 4.482 14 H 0.108 0.892 15 C -0.132 4.132 16 N -0.452 5.452 17 Si 0.741 3.259 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.198 1.198 21 C 0.069 3.931 22 C -0.154 4.154 23 C -0.124 4.124 24 C -0.180 4.180 25 C -0.124 4.124 26 C -0.171 4.171 27 C -0.195 4.195 28 C -0.031 4.031 29 N -0.262 5.262 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.162 0.838 39 H 0.083 0.917 40 H 0.148 0.852 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.168 0.832 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.530 -6.845 11.341 15.237 hybrid contribution -0.472 0.673 -1.272 1.514 sum 7.058 -6.172 10.070 13.759 Atomic orbital electron populations 1.21759 0.95247 1.01576 1.02553 1.21672 0.96796 0.94554 1.02778 1.22328 0.94958 0.92901 0.86899 0.89329 1.22203 0.95388 1.02894 1.02031 1.86280 1.82902 1.16318 1.35381 1.19500 0.93349 0.84314 0.89660 1.21017 1.04404 0.93170 0.98501 1.20573 0.95038 0.93143 0.95195 1.17915 0.83632 0.81647 0.85893 1.90629 1.40367 1.68010 1.39690 1.40947 1.47328 1.05885 1.16042 1.19098 0.97052 1.26721 1.05319 0.89153 1.25290 0.94202 0.94442 0.99228 1.69887 1.02082 1.37779 1.35450 0.86220 0.77384 0.78743 0.83601 1.19505 1.20928 1.19784 1.18329 0.91791 0.94017 0.88917 1.21192 1.00724 0.96796 0.96652 1.20943 0.95208 0.99351 0.96943 1.20869 0.97937 0.97103 1.02041 1.20748 0.99231 0.95660 0.96766 1.21084 0.94533 1.01195 1.00240 1.22778 1.01548 1.02566 0.92653 1.22153 0.95026 0.87603 0.98303 1.67029 1.21144 1.11731 1.26344 0.92661 0.92818 0.91939 0.91079 0.90344 0.91873 0.91459 0.92175 0.83838 0.91661 0.85201 0.86661 0.87025 0.86864 0.86943 0.83161 0.82687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.81 37.16 0.36 -1.26 16 2 C -0.12 -1.21 5.64 -26.73 -0.15 -1.36 16 3 C 0.09 1.06 2.49 -26.73 -0.07 1.00 16 4 H 0.09 1.16 6.98 -51.93 -0.36 0.80 16 5 C -0.17 -1.82 9.53 37.16 0.35 -1.46 16 6 O -0.30 -4.74 9.30 -18.76 -0.17 -4.92 16 7 C 0.31 5.42 7.45 -17.17 -0.13 5.30 16 8 C -0.15 -2.93 9.62 -38.82 -0.37 -3.30 16 9 C -0.03 -0.60 4.58 -104.68 -0.48 -1.07 16 10 C 0.52 13.17 6.65 -12.27 -0.08 13.09 16 11 O -0.51 -14.67 14.78 5.32 0.08 -14.60 16 12 N -0.39 -9.61 2.65 -59.94 -0.16 -9.77 16 13 C -0.36 -9.44 8.57 -15.01 -0.13 -9.57 16 14 H 0.09 2.32 7.95 -52.49 -0.42 1.90 16 15 C 0.08 2.19 4.14 -17.47 -0.07 2.12 16 16 N -0.82 -23.09 12.27 55.50 0.68 -22.41 16 17 Si 0.92 21.02 29.62 -169.99 -5.04 15.98 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 21 C 0.16 3.40 3.46 -83.72 -0.29 3.11 16 22 C -0.13 -2.53 8.98 -39.37 -0.35 -2.88 16 23 C -0.11 -1.61 10.04 -39.62 -0.40 -2.01 16 24 C -0.16 -2.23 10.04 -39.53 -0.40 -2.62 16 25 C -0.11 -1.55 9.94 -39.61 -0.39 -1.95 16 26 C -0.15 -2.67 6.03 -39.37 -0.24 -2.91 16 27 C -0.17 -3.19 6.60 -39.00 -0.26 -3.45 16 28 C 0.12 1.93 11.16 -17.62 -0.20 1.74 16 29 N -0.54 -8.77 8.61 -13.39 -0.12 -8.89 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.78 7.82 -51.93 -0.41 0.38 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.14 2.85 7.94 -52.49 -0.42 2.44 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.13 2.68 7.92 -52.48 -0.42 2.26 16 41 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.11 2.08 7.11 -52.49 -0.37 1.71 16 45 H 0.15 2.82 4.60 -52.49 -0.24 2.58 16 46 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -30.38 381.16 -8.68 -39.07 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -6.42 Total: 7.31 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -3.29 Total: -7.52 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.41 Total: -41.07 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.10 Total: -19.51 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.04 Total: 15.98 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.38 -8.68 -39.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095990969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.208 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds