Wall clock time and date at job start Tue Mar 31 2020 05:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.46793 * 2 1 4 4 H 1.08998 * 109.47569 * 55.00250 * 3 2 1 5 5 C 1.53005 * 109.46651 * 175.00171 * 3 2 1 6 6 O 1.42899 * 109.47545 * 294.99986 * 3 2 1 7 7 C 1.35686 * 117.00478 * 150.00398 * 6 3 2 8 8 C 1.38840 * 119.62099 * 180.30110 * 7 6 3 9 9 C 1.39686 * 118.93663 * 180.24581 * 8 7 6 10 10 C 1.47963 * 120.90316 * 179.73419 * 9 8 7 11 11 O 1.21555 * 120.00199 * 26.07655 * 10 9 8 12 12 N 1.34780 * 120.00042 * 206.07679 * 10 9 8 13 13 C 1.36860 * 120.00280 * 182.18068 * 12 10 9 14 14 H 1.08002 * 119.99914 * 223.32564 * 13 12 10 15 15 C 1.39030 * 119.99992 * 43.32277 * 13 12 10 16 16 N 1.31348 * 119.99938 * 25.32266 * 15 13 12 17 17 Si 1.86793 * 119.99945 * 205.32996 * 15 13 12 18 18 H 1.48493 * 109.47539 * 64.99353 * 17 15 13 19 19 H 1.48499 * 109.47195 * 185.00095 * 17 15 13 20 20 H 1.48509 * 109.46741 * 304.99401 * 17 15 13 21 21 C 1.39718 * 119.99895 * 2.17681 * 12 10 9 22 22 C 1.38977 * 120.07982 * 229.67583 * 21 12 10 23 23 C 1.38076 * 119.91860 * 179.74861 * 22 21 12 24 24 C 1.38305 * 120.07966 * 0.24930 * 23 22 21 25 25 C 1.38311 * 120.16091 * 359.97438 * 24 23 22 26 26 C 1.38076 * 120.07832 * 0.02562 * 25 24 23 27 27 C 1.40078 * 118.19551 * 359.46421 * 9 8 7 28 28 C 1.37933 * 119.12312 * 0.26788 * 27 9 8 29 29 N 1.31933 * 120.98585 * 0.02562 * 28 27 9 30 30 H 1.09003 * 109.47719 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47570 * 299.99987 * 1 2 3 32 32 H 1.08999 * 109.47484 * 59.99546 * 1 2 3 33 33 H 1.08999 * 109.46892 * 240.00032 * 2 1 3 34 34 H 1.08995 * 109.47198 * 120.00049 * 2 1 3 35 35 H 1.09001 * 109.46781 * 179.97438 * 5 3 2 36 36 H 1.08990 * 109.47117 * 299.99686 * 5 3 2 37 37 H 1.09004 * 109.47324 * 60.00449 * 5 3 2 38 38 H 1.07999 * 120.53599 * 0.02562 * 8 7 6 39 39 H 0.97000 * 119.99740 * 184.92460 * 16 15 13 40 40 H 1.08004 * 120.04111 * 0.02562 * 22 21 12 41 41 H 1.07997 * 119.95789 * 180.23370 * 23 22 21 42 42 H 1.08001 * 119.92192 * 180.02562 * 24 23 22 43 43 H 1.08001 * 119.95954 * 179.97438 * 25 24 23 44 44 H 1.08002 * 120.03573 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.43886 * 180.25120 * 27 9 8 46 46 H 1.08001 * 119.50799 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1257 6 8 1.6619 2.0814 -1.2210 7 6 1.4505 3.4210 -1.1756 8 6 1.0750 4.0959 -2.3294 9 6 0.8661 5.4757 -2.2676 10 6 0.4708 6.2391 -3.4718 11 8 -0.1240 5.6842 -4.3751 12 7 0.7701 7.5498 -3.5672 13 6 0.3654 8.2663 -4.6608 14 1 1.0448 8.9604 -5.1332 15 6 -0.9201 8.1007 -5.1636 16 7 -1.8851 7.6852 -4.3753 17 14 -1.2749 8.4690 -6.9601 18 1 -0.5297 7.5131 -7.8180 19 1 -2.7314 8.3316 -7.2153 20 1 -0.8458 9.8553 -7.2753 21 6 1.4934 8.1770 -2.5496 22 6 1.0375 9.3719 -2.0057 23 6 1.7523 9.9862 -0.9966 24 6 2.9232 9.4165 -0.5307 25 6 3.3824 8.2298 -1.0728 26 6 2.6729 7.6099 -2.0821 27 6 1.0356 6.1161 -1.0333 28 6 1.4048 5.3687 0.0656 29 7 1.5991 4.0674 -0.0321 30 1 -0.3635 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.9281 2.4719 0.1252 36 1 3.8531 0.9570 1.0570 37 1 3.9994 0.9053 -0.7162 38 1 0.9498 3.5633 -3.2605 39 1 -2.7646 7.5011 -4.7409 40 1 0.1229 9.8171 -2.3687 41 1 1.3966 10.9128 -0.5708 42 1 3.4801 9.8990 0.2590 43 1 4.2974 7.7881 -0.7068 44 1 3.0319 6.6830 -2.5047 45 1 0.8796 7.1809 -0.9435 46 1 1.5368 5.8560 1.0204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095990969.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:28 Heat of formation + Delta-G solvation = -6.605826 kcal Electronic energy + Delta-G solvation = -29976.495494 eV Core-core repulsion = 26024.722610 eV Total energy + Delta-G solvation = -3951.772884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.23980 -41.05812 -39.31933 -39.04954 -36.27978 -35.20285 -34.45245 -33.27953 -31.90890 -31.23810 -30.68846 -30.19702 -27.63241 -25.56728 -24.86786 -24.17026 -23.56368 -23.08523 -22.23456 -21.21566 -19.80334 -19.19637 -18.18995 -17.40403 -17.21253 -17.04086 -16.88304 -16.57647 -16.10023 -15.90717 -15.48726 -15.39939 -15.05721 -14.96556 -14.87935 -14.53558 -14.41593 -14.16048 -14.13047 -13.82848 -13.55554 -13.45770 -13.03454 -12.84359 -12.80478 -12.71211 -12.58061 -12.38164 -12.13199 -12.02848 -11.93711 -11.70661 -11.56303 -11.11816 -10.93171 -10.84315 -10.46451 -10.20178 -9.88772 -9.32441 -8.82611 -8.45021 -6.21463 -0.25797 0.10268 0.56954 0.67308 1.31927 1.41675 1.45832 1.92342 2.07916 2.28772 2.77115 2.83035 2.98893 3.18176 3.30499 3.68258 3.79494 3.96924 4.01655 4.02015 4.13602 4.15887 4.21809 4.27194 4.43439 4.44826 4.60010 4.64307 4.69563 4.70593 4.76592 4.81788 4.82904 5.01128 5.03021 5.03872 5.13612 5.18804 5.24460 5.26817 5.32613 5.36954 5.42152 5.65849 5.74062 5.75735 5.99708 6.23047 6.28573 6.72648 6.76881 6.86472 7.34929 7.91815 8.60436 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.004022 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.773104 B = 6959.472140 C = 8815.335008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C 0.076 3.924 4 H 0.085 0.915 5 C -0.162 4.162 6 O -0.311 6.311 7 C 0.320 3.680 8 C -0.170 4.170 9 C -0.045 4.045 10 C 0.505 3.495 11 O -0.570 6.570 12 N -0.402 5.402 13 C -0.375 4.375 14 H 0.087 0.913 15 C 0.038 3.962 16 N -0.860 5.860 17 Si 0.970 3.030 18 H -0.282 1.282 19 H -0.280 1.280 20 H -0.249 1.249 21 C 0.129 3.871 22 C -0.148 4.148 23 C -0.098 4.098 24 C -0.131 4.131 25 C -0.094 4.094 26 C -0.149 4.149 27 C -0.175 4.175 28 C 0.145 3.855 29 N -0.524 5.524 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.033 0.967 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.048 0.952 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.125 0.875 39 H 0.268 0.732 40 H 0.099 0.901 41 H 0.147 0.853 42 H 0.160 0.840 43 H 0.150 0.850 44 H 0.098 0.902 45 H 0.148 0.852 46 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.748 -5.420 15.359 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C 0.020 3.980 4 H 0.103 0.897 5 C -0.220 4.220 6 O -0.219 6.219 7 C 0.142 3.858 8 C -0.192 4.192 9 C -0.056 4.056 10 C 0.296 3.704 11 O -0.451 6.451 12 N -0.114 5.114 13 C -0.501 4.501 14 H 0.105 0.895 15 C -0.171 4.171 16 N -0.493 5.493 17 Si 0.793 3.207 18 H -0.208 1.208 19 H -0.205 1.205 20 H -0.173 1.173 21 C 0.036 3.964 22 C -0.169 4.169 23 C -0.116 4.116 24 C -0.150 4.150 25 C -0.113 4.113 26 C -0.169 4.169 27 C -0.196 4.196 28 C -0.010 4.010 29 N -0.249 5.249 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.128 0.872 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.143 0.857 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.165 0.835 42 H 0.177 0.823 43 H 0.167 0.833 44 H 0.116 0.884 45 H 0.165 0.835 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 10.410 -6.369 15.381 19.635 hybrid contribution -1.159 0.541 -2.289 2.623 sum 9.251 -5.828 13.092 17.057 Atomic orbital electron populations 1.21766 0.95918 1.02362 1.01179 1.21723 0.96160 0.93133 1.04307 1.22722 0.96297 0.93778 0.85197 0.89705 1.22178 0.93806 1.02363 1.03619 1.86287 1.82607 1.15367 1.37669 1.19383 0.92327 0.85062 0.89063 1.20920 1.06215 0.92983 0.99037 1.20289 0.96986 0.93435 0.94843 1.18577 0.82922 0.82111 0.86807 1.90556 1.43244 1.69314 1.41976 1.41018 1.47559 1.05857 1.16993 1.19264 0.96967 1.26663 1.07161 0.89509 1.26083 0.94058 0.94312 1.02608 1.69969 1.02195 1.40267 1.36836 0.85379 0.77093 0.79278 0.78921 1.20812 1.20526 1.17324 1.18521 0.92801 0.95099 0.90015 1.21127 1.00685 0.96612 0.98437 1.21269 0.95167 1.00052 0.95110 1.21392 0.96493 0.95771 1.01322 1.21148 0.99609 0.95580 0.94916 1.21047 0.93862 1.00861 1.01125 1.22736 1.02075 1.02586 0.92155 1.22821 0.92164 0.87093 0.98913 1.67228 1.20601 1.11900 1.25173 0.90854 0.92685 0.94787 0.91047 0.87178 0.93300 0.88572 0.92086 0.85731 0.92218 0.88263 0.83535 0.82270 0.83266 0.88409 0.83480 0.78013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.81 71.98 0.71 -2.39 16 2 C -0.12 -2.07 5.64 30.59 0.17 -1.90 16 3 C 0.08 1.73 2.49 30.59 0.08 1.81 16 4 H 0.08 2.02 6.98 -2.39 -0.02 2.00 16 5 C -0.16 -3.08 9.53 71.98 0.69 -2.40 16 6 O -0.31 -9.79 9.30 -90.05 -0.84 -10.63 16 7 C 0.32 11.22 7.45 84.78 0.63 11.85 16 8 C -0.17 -7.07 9.62 22.76 0.22 -6.85 16 9 C -0.04 -1.98 4.58 -19.90 -0.09 -2.07 16 10 C 0.50 27.66 6.65 86.82 0.58 28.24 16 11 O -0.57 -35.86 14.78 -3.89 -0.06 -35.92 16 12 N -0.40 -21.16 2.65 -461.81 -1.23 -22.39 16 13 C -0.38 -21.22 8.57 84.10 0.72 -20.50 16 14 H 0.09 4.76 7.95 -2.91 -0.02 4.74 16 15 C 0.04 2.19 4.14 84.96 0.35 2.54 16 16 N -0.86 -51.89 12.27 21.68 0.27 -51.63 16 17 Si 0.97 45.53 29.62 68.60 2.03 47.56 16 18 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 21 C 0.13 5.44 3.46 38.24 0.13 5.58 16 22 C -0.15 -5.67 8.98 22.41 0.20 -5.46 16 23 C -0.10 -2.64 10.04 22.25 0.22 -2.41 16 24 C -0.13 -2.89 10.04 22.30 0.22 -2.66 16 25 C -0.09 -2.35 9.94 22.25 0.22 -2.13 16 26 C -0.15 -5.17 6.03 22.41 0.14 -5.04 16 27 C -0.18 -6.33 6.60 22.64 0.15 -6.18 16 28 C 0.14 4.14 11.16 84.61 0.94 5.09 16 29 N -0.52 -16.04 8.61 -309.16 -2.66 -18.71 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.03 0.86 7.82 -2.39 -0.02 0.84 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.12 5.53 7.94 -2.91 -0.02 5.50 16 39 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 40 H 0.10 4.35 7.92 -2.91 -0.02 4.32 16 41 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 42 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 43 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 44 H 0.10 3.68 7.11 -2.91 -0.02 3.66 16 45 H 0.15 5.45 4.60 -2.91 -0.01 5.44 16 46 H 0.20 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -75.02 381.16 4.78 -70.24 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.98 Total: 26.38 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 6.28 Total: -4.91 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -3.62 Total: -92.72 kcal Atomic # 8 Polarization: -45.65 SS G_CDS: -0.89 Total: -46.55 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -75.02 4.78 -70.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095990969.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.638 kcal (2) G-P(sol) polarization free energy of solvation -75.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds