Wall clock time and date at job start Tue Mar 31 2020 05:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47206 * 2 1 4 4 H 1.08997 * 109.47134 * 305.00194 * 3 2 1 5 5 C 1.52996 * 109.47218 * 184.99809 * 3 2 1 6 6 O 1.42905 * 109.46751 * 65.00035 * 3 2 1 7 7 C 1.35684 * 116.99796 * 209.99937 * 6 3 2 8 8 C 1.38839 * 119.62067 * 180.30049 * 7 6 3 9 9 C 1.39684 * 118.93625 * 180.24614 * 8 7 6 10 10 C 1.47971 * 120.90152 * 179.73271 * 9 8 7 11 11 O 1.21551 * 119.99788 * 26.07817 * 10 9 8 12 12 N 1.34777 * 119.99842 * 206.07974 * 10 9 8 13 13 C 1.36868 * 119.99691 * 182.18272 * 12 10 9 14 14 H 1.08002 * 119.99421 * 223.32289 * 13 12 10 15 15 C 1.39024 * 120.00249 * 43.31646 * 13 12 10 16 16 N 1.31341 * 119.99660 * 25.33447 * 15 13 12 17 17 Si 1.86793 * 120.00116 * 205.32936 * 15 13 12 18 18 H 1.48499 * 109.47293 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47054 * 120.00079 * 17 15 13 20 20 H 1.48500 * 109.47425 * 240.00297 * 17 15 13 21 21 C 1.39700 * 120.00463 * 2.17618 * 12 10 9 22 22 C 1.38983 * 120.08493 * 229.67791 * 21 12 10 23 23 C 1.38078 * 119.92245 * 179.74459 * 22 21 12 24 24 C 1.38314 * 120.07669 * 0.25289 * 23 22 21 25 25 C 1.38311 * 120.16544 * 359.97438 * 24 23 22 26 26 C 1.38086 * 120.07659 * 0.02562 * 25 24 23 27 27 C 1.40074 * 118.19894 * 359.46844 * 9 8 7 28 28 C 1.37931 * 119.12254 * 0.26706 * 27 9 8 29 29 N 1.31933 * 120.98102 * 359.97438 * 28 27 9 30 30 H 1.08998 * 109.47008 * 59.99957 * 1 2 3 31 31 H 1.08997 * 109.47093 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47057 * 299.99646 * 1 2 3 33 33 H 1.08995 * 109.47425 * 239.99859 * 2 1 3 34 34 H 1.09006 * 109.47305 * 120.00106 * 2 1 3 35 35 H 1.09005 * 109.47649 * 300.00268 * 5 3 2 36 36 H 1.09003 * 109.47117 * 59.99683 * 5 3 2 37 37 H 1.08996 * 109.47561 * 180.02562 * 5 3 2 38 38 H 1.08004 * 120.53466 * 0.02562 * 8 7 6 39 39 H 0.97005 * 120.00229 * 184.91282 * 16 15 13 40 40 H 1.08000 * 120.03892 * 0.02562 * 22 21 12 41 41 H 1.07992 * 119.95919 * 180.22961 * 23 22 21 42 42 H 1.07997 * 119.91590 * 179.97438 * 24 23 22 43 43 H 1.07992 * 119.96534 * 179.97438 * 25 24 23 44 44 H 1.07999 * 120.04022 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.43783 * 180.24818 * 27 9 8 46 46 H 1.07996 * 119.50381 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 8 1.6620 2.0814 1.2211 7 6 1.4506 3.4209 1.1757 8 6 1.0872 4.0978 2.3322 9 6 0.8681 5.4759 2.2681 10 6 0.4736 6.2395 3.4726 11 8 0.7794 5.8334 4.5767 12 7 -0.2249 7.3851 3.3453 13 6 -0.5511 8.1146 4.4565 14 1 -1.5420 8.5324 4.5563 15 6 0.3929 8.3176 5.4567 16 7 1.6737 8.2736 5.1695 17 14 -0.1604 8.6529 7.2090 18 1 -1.6442 8.6503 7.2687 19 1 0.3725 7.5970 8.1071 20 1 0.3506 9.9775 7.6446 21 6 -0.6157 7.8281 2.0794 22 6 -0.3667 9.1396 1.6927 23 6 -0.7497 9.5725 0.4387 24 6 -1.3851 8.7040 -0.4303 25 6 -1.6388 7.3994 -0.0472 26 6 -1.2586 6.9596 1.2053 27 6 1.0374 6.1163 1.0339 28 6 1.4058 5.3688 -0.0653 29 7 1.5993 4.0674 0.0323 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 3.9995 0.9053 0.7161 36 1 3.8532 0.9570 -1.0570 37 1 3.9283 2.4719 -0.1252 38 1 0.9723 3.5669 3.2656 39 1 2.3324 8.3440 5.8781 40 1 0.1299 9.8182 2.3705 41 1 -0.5531 10.5904 0.1362 42 1 -1.6839 9.0454 -1.4103 43 1 -2.1355 6.7242 -0.7281 44 1 -1.4567 5.9407 1.5037 45 1 0.8814 7.1812 0.9440 46 1 1.5384 5.8564 -1.0198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095990970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:33 Heat of formation + Delta-G solvation = 11.130684 kcal Electronic energy + Delta-G solvation = -29984.421143 eV Core-core repulsion = 26033.417372 eV Total energy + Delta-G solvation = -3951.003771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.75266 -39.64647 -37.94025 -37.52257 -34.49564 -34.20244 -32.72627 -31.61151 -30.58628 -30.09340 -29.53390 -28.71830 -25.81563 -24.24640 -23.58791 -22.85907 -22.19525 -21.71151 -21.01699 -19.76989 -18.31475 -17.52021 -16.80653 -15.92277 -15.74112 -15.51900 -15.43306 -15.16211 -14.64893 -14.33149 -14.12631 -14.05215 -13.79197 -13.73053 -13.57259 -13.20612 -13.06734 -12.80719 -12.72702 -12.55038 -12.21270 -11.90313 -11.81674 -11.71164 -11.24414 -11.19795 -11.18168 -10.96610 -10.87417 -10.73789 -10.59760 -10.53756 -10.34641 -9.47348 -9.36120 -9.21671 -8.64702 -8.54055 -8.48339 -7.93246 -7.17407 -6.45886 -4.16994 1.27076 1.48888 1.92423 2.01218 3.16024 3.19799 3.31038 3.32594 3.76052 4.07443 4.29961 4.45374 4.50471 4.62200 4.67606 4.89221 5.02803 5.06717 5.21353 5.29742 5.35546 5.41340 5.45743 5.47670 5.50996 5.51698 5.57753 5.65974 5.76593 5.79718 5.88478 5.97015 6.01590 6.07459 6.12064 6.14147 6.18624 6.24796 6.42202 6.57369 6.63601 6.72954 6.93748 7.05422 7.16047 7.35410 7.48895 7.54472 8.00961 8.14661 8.62157 8.77323 9.25422 9.78628 10.60630 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011591 B = 0.003953 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.989423 B = 7082.423240 C = 8658.858026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C 0.086 3.914 4 H 0.089 0.911 5 C -0.168 4.168 6 O -0.301 6.301 7 C 0.311 3.689 8 C -0.149 4.149 9 C -0.028 4.028 10 C 0.520 3.480 11 O -0.510 6.510 12 N -0.390 5.390 13 C -0.356 4.356 14 H 0.091 0.909 15 C 0.081 3.919 16 N -0.821 5.821 17 Si 0.913 3.087 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.283 1.283 21 C 0.165 3.835 22 C -0.133 4.133 23 C -0.106 4.106 24 C -0.160 4.160 25 C -0.105 4.105 26 C -0.150 4.150 27 C -0.175 4.175 28 C 0.123 3.877 29 N -0.538 5.538 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.144 0.856 39 H 0.272 0.728 40 H 0.130 0.870 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.151 0.849 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.117 -7.364 -13.378 15.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C 0.029 3.971 4 H 0.107 0.893 5 C -0.226 4.226 6 O -0.209 6.209 7 C 0.132 3.868 8 C -0.171 4.171 9 C -0.040 4.040 10 C 0.309 3.691 11 O -0.387 6.387 12 N -0.102 5.102 13 C -0.480 4.480 14 H 0.109 0.891 15 C -0.132 4.132 16 N -0.452 5.452 17 Si 0.739 3.261 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.209 1.209 21 C 0.069 3.931 22 C -0.154 4.154 23 C -0.124 4.124 24 C -0.179 4.179 25 C -0.124 4.124 26 C -0.171 4.171 27 C -0.195 4.195 28 C -0.031 4.031 29 N -0.262 5.262 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.162 0.838 39 H 0.082 0.918 40 H 0.148 0.852 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.168 0.832 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.497 -8.187 -13.138 15.488 hybrid contribution -0.208 0.711 1.327 1.520 sum -0.706 -7.476 -11.811 13.996 Atomic orbital electron populations 1.21753 0.95275 1.01559 1.02472 1.21677 0.96765 0.94577 1.02811 1.22326 0.94985 0.92868 0.86874 0.89314 1.22207 0.95402 1.02951 1.02040 1.86281 1.82886 1.16311 1.35406 1.19498 0.93350 0.84326 0.89648 1.21017 1.04602 0.93342 0.98128 1.20573 0.95231 0.93233 0.94922 1.17914 0.83307 0.80562 0.87296 1.90631 1.54169 1.67373 1.26517 1.40960 1.48105 1.18053 1.03125 1.19170 0.97653 1.35221 0.96003 0.89096 1.25291 0.94191 0.93206 1.00509 1.69899 1.00886 1.40328 1.34073 0.86140 0.79439 0.77585 0.82966 1.19061 1.20149 1.20869 1.18330 0.95006 0.93476 0.86241 1.21192 1.01599 0.96311 0.96272 1.20944 0.98666 0.99078 0.93750 1.20870 1.03330 0.94099 0.99646 1.20749 1.00245 0.95805 0.95600 1.21091 1.00859 0.99756 0.95368 1.22779 1.01145 1.03019 0.92599 1.22152 0.94679 0.87722 0.98528 1.67024 1.20905 1.11799 1.26521 0.92817 0.92673 0.91990 0.90336 0.91070 0.92147 0.91452 0.91866 0.83837 0.91765 0.85205 0.86662 0.87026 0.86860 0.86938 0.83160 0.82685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.81 37.16 0.36 -1.17 16 2 C -0.12 -1.19 5.64 -26.73 -0.15 -1.35 16 3 C 0.09 1.07 2.49 -26.73 -0.07 1.00 16 4 H 0.09 1.15 6.98 -51.93 -0.36 0.79 16 5 C -0.17 -1.89 9.53 37.16 0.35 -1.54 16 6 O -0.30 -4.74 9.30 -18.76 -0.17 -4.92 16 7 C 0.31 5.42 7.45 -17.17 -0.13 5.29 16 8 C -0.15 -2.93 9.62 -38.82 -0.37 -3.30 16 9 C -0.03 -0.60 4.58 -104.68 -0.48 -1.08 16 10 C 0.52 13.16 6.65 -12.27 -0.08 13.08 16 11 O -0.51 -14.68 14.78 5.32 0.08 -14.60 16 12 N -0.39 -9.61 2.65 -59.93 -0.16 -9.77 16 13 C -0.36 -9.40 8.57 -15.01 -0.13 -9.53 16 14 H 0.09 2.34 7.95 -52.49 -0.42 1.93 16 15 C 0.08 2.18 4.14 -17.47 -0.07 2.11 16 16 N -0.82 -23.09 12.27 55.50 0.68 -22.41 16 17 Si 0.91 20.99 29.62 -169.99 -5.04 15.95 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 C 0.16 3.39 3.46 -83.72 -0.29 3.11 16 22 C -0.13 -2.53 8.98 -39.36 -0.35 -2.88 16 23 C -0.11 -1.61 10.04 -39.61 -0.40 -2.00 16 24 C -0.16 -2.22 10.04 -39.53 -0.40 -2.62 16 25 C -0.11 -1.55 9.95 -39.61 -0.39 -1.94 16 26 C -0.15 -2.68 6.03 -39.36 -0.24 -2.91 16 27 C -0.17 -3.19 6.60 -39.01 -0.26 -3.45 16 28 C 0.12 1.93 11.16 -17.62 -0.20 1.74 16 29 N -0.54 -8.77 8.61 -13.39 -0.12 -8.89 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.73 7.82 -51.93 -0.41 0.32 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.14 2.85 7.94 -52.48 -0.42 2.44 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.13 2.68 7.92 -52.49 -0.42 2.26 16 41 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.11 2.08 7.11 -52.49 -0.37 1.70 16 45 H 0.15 2.82 4.60 -52.48 -0.24 2.58 16 46 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -30.45 381.16 -8.68 -39.14 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.42 Total: 7.20 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -3.29 Total: -7.45 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.41 Total: -41.07 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.10 Total: -19.51 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.04 Total: 15.95 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.45 -8.68 -39.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095990970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.269 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds