Wall clock time and date at job start Tue Mar 31 2020 04:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00035 * 2 1 4 4 C 1.53002 * 109.47133 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47173 * 180.02562 * 4 3 2 6 6 O 1.21286 * 120.00044 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99968 * 180.02562 * 5 4 3 8 8 C 1.46929 * 120.64555 * 179.97438 * 7 5 4 9 9 C 1.53175 * 108.78619 * 233.61172 * 8 7 5 10 10 C 1.53109 * 109.32783 * 305.28998 * 9 8 7 11 11 C 1.53112 * 109.40950 * 61.43201 * 10 9 8 12 12 C 1.46925 * 120.64911 * 0.02562 * 7 5 4 13 13 C 1.50324 * 109.54379 * 301.34459 * 10 9 8 14 14 O 1.21300 * 118.60730 * 42.66919 * 13 10 9 15 15 N 1.33690 * 122.78111 * 222.68981 * 13 10 9 16 16 C 1.37090 * 118.51721 * 181.67631 * 15 13 10 17 17 H 1.08001 * 120.00363 * 21.57941 * 16 15 13 18 18 C 1.38956 * 119.99978 * 201.58237 * 16 15 13 19 19 N 1.31407 * 119.99741 * 16.49854 * 18 16 15 20 20 Si 1.86802 * 119.99995 * 196.49488 * 18 16 15 21 21 H 1.48503 * 109.46916 * 94.97732 * 20 18 16 22 22 H 1.48503 * 109.46936 * 214.97720 * 20 18 16 23 23 H 1.48494 * 109.47283 * 334.97753 * 20 18 16 24 24 C 1.46002 * 122.96367 * 1.65106 * 15 13 10 25 25 C 1.53001 * 110.01644 * 341.96344 * 24 15 13 26 26 N 1.46991 * 109.25070 * 180.98610 * 10 9 8 27 27 C 1.46900 * 111.00286 * 294.02441 * 26 10 9 28 28 H 1.09000 * 109.47476 * 300.00276 * 1 2 3 29 29 H 1.09005 * 109.47177 * 60.00529 * 1 2 3 30 30 H 1.08998 * 109.47185 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47337 * 60.00081 * 3 2 1 32 32 H 1.08998 * 109.47037 * 299.99536 * 3 2 1 33 33 H 1.08994 * 109.46897 * 59.99705 * 4 3 2 34 34 H 1.08998 * 109.46915 * 299.99775 * 4 3 2 35 35 H 1.09001 * 109.58441 * 113.82227 * 8 7 5 36 36 H 1.08994 * 109.58322 * 353.40183 * 8 7 5 37 37 H 1.09000 * 109.49379 * 185.33188 * 9 8 7 38 38 H 1.08999 * 109.49890 * 65.24849 * 9 8 7 39 39 H 1.08997 * 109.49773 * 58.51302 * 11 10 9 40 40 H 1.09000 * 109.49900 * 178.60933 * 11 10 9 41 41 H 1.09003 * 109.58494 * 246.16626 * 12 7 5 42 42 H 1.08997 * 109.58736 * 6.58376 * 12 7 5 43 43 H 0.96999 * 120.00083 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.38283 * 102.12792 * 24 15 13 45 45 H 1.09002 * 109.38360 * 221.79773 * 24 15 13 46 46 H 1.09000 * 109.61505 * 290.47318 * 25 24 15 47 47 H 1.09002 * 109.58905 * 170.00588 * 25 24 15 48 48 H 1.09003 * 109.46623 * 60.00014 * 27 26 10 49 49 H 1.08996 * 109.47131 * 299.99912 * 27 26 10 50 50 H 1.08993 * 109.46994 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1484 2.5613 0.0013 6 8 3.4355 3.5426 0.0008 7 7 5.4888 2.7022 0.0014 8 6 6.1015 4.0376 0.0014 9 6 7.0893 4.1272 -1.1659 10 6 8.0943 2.9762 -1.0688 11 6 7.3503 1.6415 -1.1665 12 6 6.3658 1.5234 0.0003 13 6 8.8202 3.0520 0.2454 14 8 8.1837 3.3039 1.2468 15 7 10.1376 2.8539 0.3571 16 6 10.7045 2.9096 1.6040 17 1 10.0937 2.7600 2.4821 18 6 12.0649 3.1587 1.7383 19 7 12.7446 3.6555 0.7294 20 14 12.9276 2.7872 3.3530 21 1 13.5415 1.4366 3.2869 22 1 13.9858 3.8009 3.5935 23 1 11.9411 2.8288 4.4622 24 6 10.9998 2.5805 -0.7890 25 6 10.1571 2.1212 -1.9806 26 7 9.0555 3.0774 -2.1762 27 6 8.3935 2.8605 -3.4695 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8574 0.6435 -0.8890 34 1 3.8567 0.6439 0.8909 35 1 6.6308 4.1967 0.9409 36 1 5.3267 4.7950 -0.1166 37 1 7.6199 5.0782 -1.1212 38 1 6.5461 4.0573 -2.1083 39 1 6.8042 1.5976 -2.1088 40 1 8.0670 0.8215 -1.1224 41 1 6.9168 1.4771 0.9397 42 1 5.7654 0.6214 -0.1182 43 1 13.6943 3.8290 0.8229 44 1 11.5425 3.4867 -1.0578 45 1 11.7124 1.7983 -0.5272 46 1 9.7497 1.1302 -1.7803 47 1 10.7773 2.0897 -2.8764 48 1 7.6171 3.6124 -3.6108 49 1 7.9448 1.8673 -3.4859 50 1 9.1273 2.9413 -4.2713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096077162.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:19 Heat of formation + Delta-G solvation = -72.933053 kcal Electronic energy + Delta-G solvation = -32060.386197 eV Core-core repulsion = 27896.146892 eV Total energy + Delta-G solvation = -4164.239306 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.87680 -39.41758 -37.90052 -36.83448 -36.29414 -34.51285 -32.38637 -31.69534 -30.90641 -30.64262 -28.86139 -27.01550 -26.40283 -24.80191 -24.27513 -23.34145 -22.81300 -21.57642 -21.01516 -19.09514 -17.89461 -17.26831 -16.85802 -16.44434 -16.32642 -16.08889 -15.50221 -15.11530 -15.08054 -14.94382 -14.83934 -14.56543 -14.15376 -13.97980 -13.63748 -13.51625 -13.10814 -13.02671 -12.74031 -12.44308 -12.25098 -12.21075 -12.02052 -11.80634 -11.64737 -11.52409 -11.37238 -11.33262 -11.15270 -11.03632 -10.77947 -10.64760 -10.60403 -10.43555 -10.27552 -10.11781 -9.86097 -9.62249 -9.06577 -8.60615 -8.01990 -7.84272 -7.69929 -6.32968 -3.93655 2.77598 3.04011 3.11763 3.22932 3.28204 3.73432 3.76839 4.05142 4.19299 4.64502 4.72231 4.82546 4.90190 4.92165 5.03503 5.12341 5.13357 5.17508 5.17619 5.32797 5.40197 5.41010 5.43395 5.53949 5.62733 5.66340 5.68862 5.70303 5.72159 5.76581 5.82435 5.92684 6.01075 6.05515 6.17700 6.27097 6.27887 6.36986 6.71040 6.76197 6.89625 6.93009 7.26181 7.28041 7.36300 7.55937 7.68614 8.12804 8.34039 8.42384 9.14791 9.42542 9.93289 10.65571 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016165 B = 0.003181 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.705787 B = 8799.454463 C = 9634.006974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.078 3.922 4 C -0.139 4.139 5 C 0.516 3.484 6 O -0.556 6.556 7 N -0.591 5.591 8 C 0.095 3.905 9 C -0.099 4.099 10 C 0.108 3.892 11 C -0.154 4.154 12 C 0.110 3.890 13 C 0.458 3.542 14 O -0.584 6.584 15 N -0.425 5.425 16 C -0.312 4.312 17 H 0.102 0.898 18 C 0.033 3.967 19 N -0.876 5.876 20 Si 0.924 3.076 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.269 1.269 24 C 0.138 3.862 25 C 0.026 3.974 26 N -0.523 5.523 27 C 0.018 3.982 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.268 0.732 44 H 0.096 0.904 45 H 0.066 0.934 46 H 0.034 0.966 47 H 0.082 0.918 48 H 0.067 0.933 49 H 0.027 0.973 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.247 -7.114 -7.604 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C 0.001 3.999 4 C -0.179 4.179 5 C 0.303 3.697 6 O -0.436 6.436 7 N -0.322 5.322 8 C -0.026 4.026 9 C -0.138 4.138 10 C 0.015 3.985 11 C -0.194 4.194 12 C -0.013 4.013 13 C 0.246 3.754 14 O -0.471 6.471 15 N -0.141 5.141 16 C -0.440 4.440 17 H 0.120 0.880 18 C -0.171 4.171 19 N -0.515 5.515 20 Si 0.751 3.249 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.193 1.193 24 C 0.014 3.986 25 C -0.102 4.102 26 N -0.247 5.247 27 C -0.130 4.130 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.141 0.859 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.114 0.886 45 H 0.085 0.915 46 H 0.052 0.948 47 H 0.100 0.900 48 H 0.086 0.914 49 H 0.045 0.955 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.331 -6.090 -7.172 15.511 hybrid contribution 0.328 -0.878 0.355 1.002 sum -12.003 -6.968 -6.817 15.463 Atomic orbital electron populations 1.22716 0.80808 1.02585 1.00152 1.87801 1.19899 1.28278 1.95565 1.22174 0.92130 0.83930 1.01691 1.21496 0.95099 0.95948 1.05377 1.20253 0.82170 0.90729 0.76502 1.90666 1.60568 1.40815 1.51545 1.47954 1.04687 1.08265 1.71315 1.22254 0.95556 0.82674 1.02136 1.21691 0.95551 0.98313 0.98254 1.21141 0.91969 0.94690 0.90732 1.22469 0.98920 0.98798 0.99207 1.21744 0.92339 0.87031 1.00210 1.19071 0.83338 0.84169 0.88869 1.90363 1.64645 1.54738 1.37311 1.43192 1.05042 1.58428 1.07434 1.19726 0.92069 1.47345 0.84861 0.87995 1.25333 0.97174 0.95690 0.98889 1.69988 1.09190 1.40566 1.31727 0.85935 0.79013 0.78020 0.81926 1.20475 1.20961 1.19301 1.21439 0.91279 1.02726 0.83134 1.22830 0.93471 0.93377 1.00496 1.62713 1.09811 1.50795 1.01337 1.22483 0.99314 0.99657 0.91584 0.93982 0.94052 0.89658 0.92369 0.92484 0.88340 0.88113 0.85941 0.90327 0.89977 0.92076 0.91003 0.90556 0.89114 0.90434 0.92186 0.88636 0.91535 0.94798 0.89998 0.91389 0.95494 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.40 -4.56 10.70 -35.23 -0.38 -4.94 16 3 C 0.08 0.92 5.23 37.16 0.19 1.11 16 4 C -0.14 -1.66 4.42 -27.88 -0.12 -1.78 16 5 C 0.52 7.98 7.70 -10.99 -0.08 7.90 16 6 O -0.56 -10.22 15.40 5.55 0.09 -10.14 16 7 N -0.59 -9.47 2.97 -172.82 -0.51 -9.98 16 8 C 0.10 1.69 5.89 -3.72 -0.02 1.67 16 9 C -0.10 -1.68 4.77 -26.58 -0.13 -1.80 16 10 C 0.11 1.90 0.44 -132.77 -0.06 1.84 16 11 C -0.15 -2.28 4.10 -26.61 -0.11 -2.38 16 12 C 0.11 1.63 5.82 -3.74 -0.02 1.61 16 13 C 0.46 10.30 5.93 -11.65 -0.07 10.23 16 14 O -0.58 -14.41 10.92 5.54 0.06 -14.34 16 15 N -0.42 -10.28 2.98 -115.62 -0.34 -10.63 16 16 C -0.31 -8.29 9.12 -14.93 -0.14 -8.42 16 17 H 0.10 2.85 7.26 -52.49 -0.38 2.47 16 18 C 0.03 0.84 5.04 -17.47 -0.09 0.75 16 19 N -0.88 -22.54 10.59 55.50 0.59 -21.96 16 20 Si 0.92 20.11 29.58 -169.99 -5.03 15.08 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 24 C 0.14 2.95 4.94 -4.31 -0.02 2.93 16 25 C 0.03 0.44 5.49 -3.67 -0.02 0.42 16 26 N -0.52 -8.67 4.68 -228.28 -1.07 -9.74 16 27 C 0.02 0.23 8.74 60.06 0.52 0.75 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 33 H 0.10 1.02 7.69 -51.93 -0.40 0.62 16 34 H 0.10 1.12 7.95 -51.93 -0.41 0.70 16 35 H 0.12 2.56 5.21 -51.93 -0.27 2.29 16 36 H 0.08 1.39 7.01 -51.93 -0.36 1.03 16 37 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.06 0.92 6.58 -51.93 -0.34 0.58 16 39 H 0.07 0.94 6.37 -51.93 -0.33 0.61 16 40 H 0.08 1.12 6.40 -51.93 -0.33 0.79 16 41 H 0.09 1.61 6.47 -51.93 -0.34 1.27 16 42 H 0.08 0.90 5.94 -51.93 -0.31 0.59 16 43 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 44 H 0.10 2.28 6.80 -51.93 -0.35 1.92 16 45 H 0.07 1.46 7.65 -51.93 -0.40 1.07 16 46 H 0.03 0.54 6.19 -51.93 -0.32 0.22 16 47 H 0.08 1.17 8.00 -51.93 -0.42 0.76 16 48 H 0.07 0.84 6.47 -51.93 -0.34 0.50 16 49 H 0.03 0.32 6.22 -51.93 -0.32 -0.01 16 50 H 0.07 0.76 8.06 -51.93 -0.42 0.35 16 LS Contribution 371.13 15.07 5.59 5.59 Total: -1.00 -30.37 371.13 -7.76 -38.14 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -7.71 Total: 6.68 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: 0.95 Total: 16.23 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -1.34 Total: -52.30 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.23 Total: -29.42 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.37 -7.76 -38.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096077162.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.796 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds