Wall clock time and date at job start Tue Mar 31 2020 04:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00035 * 2 1 4 4 C 1.53002 * 109.47133 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47173 * 180.02562 * 4 3 2 6 6 O 1.21286 * 120.00044 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99968 * 180.02562 * 5 4 3 8 8 C 1.46929 * 120.64555 * 179.97438 * 7 5 4 9 9 C 1.53175 * 108.78619 * 233.61172 * 8 7 5 10 10 C 1.53109 * 109.32783 * 305.28998 * 9 8 7 11 11 C 1.53112 * 109.40950 * 61.43201 * 10 9 8 12 12 C 1.46925 * 120.64911 * 0.02562 * 7 5 4 13 13 C 1.50324 * 109.54379 * 301.34459 * 10 9 8 14 14 O 1.21300 * 118.60730 * 42.66919 * 13 10 9 15 15 N 1.33690 * 122.78111 * 222.68981 * 13 10 9 16 16 C 1.37090 * 118.51721 * 181.67631 * 15 13 10 17 17 H 1.08001 * 120.00363 * 21.57941 * 16 15 13 18 18 C 1.38956 * 119.99978 * 201.58237 * 16 15 13 19 19 N 1.31407 * 119.99741 * 16.49854 * 18 16 15 20 20 Si 1.86802 * 119.99995 * 196.49488 * 18 16 15 21 21 H 1.48503 * 109.46916 * 94.97732 * 20 18 16 22 22 H 1.48503 * 109.46936 * 214.97720 * 20 18 16 23 23 H 1.48494 * 109.47283 * 334.97753 * 20 18 16 24 24 C 1.46002 * 122.96367 * 1.65106 * 15 13 10 25 25 C 1.53001 * 110.01644 * 341.96344 * 24 15 13 26 26 N 1.46991 * 109.25070 * 180.98610 * 10 9 8 27 27 C 1.46900 * 111.00286 * 294.02441 * 26 10 9 28 28 H 1.09000 * 109.47476 * 300.00276 * 1 2 3 29 29 H 1.09005 * 109.47177 * 60.00529 * 1 2 3 30 30 H 1.08998 * 109.47185 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47337 * 60.00081 * 3 2 1 32 32 H 1.08998 * 109.47037 * 299.99536 * 3 2 1 33 33 H 1.08994 * 109.46897 * 59.99705 * 4 3 2 34 34 H 1.08998 * 109.46915 * 299.99775 * 4 3 2 35 35 H 1.09001 * 109.58441 * 113.82227 * 8 7 5 36 36 H 1.08994 * 109.58322 * 353.40183 * 8 7 5 37 37 H 1.09000 * 109.49379 * 185.33188 * 9 8 7 38 38 H 1.08999 * 109.49890 * 65.24849 * 9 8 7 39 39 H 1.08997 * 109.49773 * 58.51302 * 11 10 9 40 40 H 1.09000 * 109.49900 * 178.60933 * 11 10 9 41 41 H 1.09003 * 109.58494 * 246.16626 * 12 7 5 42 42 H 1.08997 * 109.58736 * 6.58376 * 12 7 5 43 43 H 0.96999 * 120.00083 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.38283 * 102.12792 * 24 15 13 45 45 H 1.09002 * 109.38360 * 221.79773 * 24 15 13 46 46 H 1.09000 * 109.61505 * 290.47318 * 25 24 15 47 47 H 1.09002 * 109.58905 * 170.00588 * 25 24 15 48 48 H 1.09003 * 109.46623 * 60.00014 * 27 26 10 49 49 H 1.08996 * 109.47131 * 299.99912 * 27 26 10 50 50 H 1.08993 * 109.46994 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1484 2.5613 0.0013 6 8 3.4355 3.5426 0.0008 7 7 5.4888 2.7022 0.0014 8 6 6.1015 4.0376 0.0014 9 6 7.0893 4.1272 -1.1659 10 6 8.0943 2.9762 -1.0688 11 6 7.3503 1.6415 -1.1665 12 6 6.3658 1.5234 0.0003 13 6 8.8202 3.0520 0.2454 14 8 8.1837 3.3039 1.2468 15 7 10.1376 2.8539 0.3571 16 6 10.7045 2.9096 1.6040 17 1 10.0937 2.7600 2.4821 18 6 12.0649 3.1587 1.7383 19 7 12.7446 3.6555 0.7294 20 14 12.9276 2.7872 3.3530 21 1 13.5415 1.4366 3.2869 22 1 13.9858 3.8009 3.5935 23 1 11.9411 2.8288 4.4622 24 6 10.9998 2.5805 -0.7890 25 6 10.1571 2.1212 -1.9806 26 7 9.0555 3.0774 -2.1762 27 6 8.3935 2.8605 -3.4695 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8574 0.6435 -0.8890 34 1 3.8567 0.6439 0.8909 35 1 6.6308 4.1967 0.9409 36 1 5.3267 4.7950 -0.1166 37 1 7.6199 5.0782 -1.1212 38 1 6.5461 4.0573 -2.1083 39 1 6.8042 1.5976 -2.1088 40 1 8.0670 0.8215 -1.1224 41 1 6.9168 1.4771 0.9397 42 1 5.7654 0.6214 -0.1182 43 1 13.6943 3.8290 0.8229 44 1 11.5425 3.4867 -1.0578 45 1 11.7124 1.7983 -0.5272 46 1 9.7497 1.1302 -1.7803 47 1 10.7773 2.0897 -2.8764 48 1 7.6171 3.6124 -3.6108 49 1 7.9448 1.8673 -3.4859 50 1 9.1273 2.9413 -4.2713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096077162.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:18 Heat of formation + Delta-G solvation = -95.071879 kcal Electronic energy + Delta-G solvation = -32061.346209 eV Core-core repulsion = 27896.146892 eV Total energy + Delta-G solvation = -4165.199317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.31275 -40.73700 -38.81099 -38.36563 -37.78874 -36.12382 -33.79805 -33.25039 -32.25015 -31.85391 -30.33297 -28.15377 -27.42732 -26.47572 -25.47653 -24.57344 -24.07523 -23.02123 -22.45581 -20.40059 -19.45582 -18.63961 -18.36732 -17.87214 -17.32706 -17.26087 -16.79273 -16.63507 -16.42612 -16.19008 -16.11203 -15.84445 -15.53355 -15.33023 -15.03206 -14.72741 -14.58068 -14.24235 -14.02247 -13.74381 -13.68633 -13.44606 -13.25453 -13.11521 -12.96866 -12.83679 -12.73905 -12.49760 -12.44319 -12.36540 -12.20538 -12.14540 -12.02010 -11.96881 -11.85594 -11.62990 -10.96288 -10.89227 -10.67208 -10.12960 -9.61466 -9.40093 -9.23298 -8.25360 -5.95400 1.36330 1.41376 1.53210 1.56553 1.89454 2.04828 2.28137 2.82202 2.83186 3.08109 3.12232 3.55100 3.62647 3.79974 3.87737 3.99698 4.01494 4.11763 4.13563 4.27841 4.35523 4.41092 4.45582 4.50920 4.52706 4.53396 4.57304 4.58435 4.67977 4.76737 4.78056 4.81052 4.84524 4.86005 4.87763 4.96180 5.05242 5.07310 5.12180 5.31180 5.49294 5.52907 5.59583 5.96250 6.10895 6.14290 6.17956 6.45911 6.52683 7.10657 7.21644 7.59608 8.11082 8.70171 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016165 B = 0.003181 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.705787 B = 8799.454463 C = 9634.006974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.409 6.409 3 C 0.082 3.918 4 C -0.131 4.131 5 C 0.515 3.485 6 O -0.589 6.589 7 N -0.592 5.592 8 C 0.101 3.899 9 C -0.091 4.091 10 C 0.114 3.886 11 C -0.147 4.147 12 C 0.112 3.888 13 C 0.452 3.548 14 O -0.614 6.614 15 N -0.446 5.446 16 C -0.344 4.344 17 H 0.074 0.926 18 C -0.001 4.001 19 N -0.893 5.893 20 Si 0.984 3.016 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.277 1.277 24 C 0.145 3.855 25 C 0.039 3.961 26 N -0.541 5.541 27 C 0.018 3.982 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.119 0.881 43 H 0.271 0.729 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.048 0.952 47 H 0.111 0.889 48 H 0.073 0.927 49 H 0.047 0.953 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.307 -9.246 -9.873 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C 0.005 3.995 4 C -0.170 4.170 5 C 0.304 3.696 6 O -0.471 6.471 7 N -0.323 5.323 8 C -0.021 4.021 9 C -0.130 4.130 10 C 0.021 3.979 11 C -0.187 4.187 12 C -0.011 4.011 13 C 0.241 3.759 14 O -0.502 6.502 15 N -0.163 5.163 16 C -0.472 4.472 17 H 0.092 0.908 18 C -0.203 4.203 19 N -0.532 5.532 20 Si 0.809 3.191 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.202 1.202 24 C 0.021 3.979 25 C -0.089 4.089 26 N -0.266 5.266 27 C -0.129 4.129 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.137 0.863 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.129 0.871 48 H 0.092 0.908 49 H 0.065 0.935 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.396 -8.242 -9.471 18.360 hybrid contribution 0.574 -0.146 1.104 1.253 sum -12.822 -8.388 -8.367 17.458 Atomic orbital electron populations 1.22946 0.79223 1.04076 1.00785 1.87768 1.21659 1.27752 1.95633 1.22058 0.92148 0.84214 1.01109 1.21476 0.94953 0.93493 1.07120 1.20883 0.81553 0.91889 0.75231 1.90652 1.61164 1.42379 1.52886 1.47984 1.05225 1.07753 1.71352 1.21904 0.95389 0.84110 1.00738 1.21622 0.95151 0.97275 0.98972 1.20993 0.91767 0.96682 0.88454 1.22456 0.98832 0.96840 1.00524 1.21785 0.92629 0.88033 0.98685 1.20097 0.82867 0.82235 0.90726 1.90374 1.65302 1.55230 1.39289 1.43456 1.06040 1.59365 1.07401 1.19630 0.92704 1.49285 0.85558 0.90807 1.26020 0.97218 0.95121 1.01941 1.70097 1.09430 1.40621 1.33007 0.85051 0.77651 0.78455 0.77990 1.18976 1.20360 1.20184 1.21292 0.91667 1.00829 0.84100 1.22704 0.93414 0.93627 0.99198 1.62627 1.09984 1.51423 1.02568 1.22584 0.99856 1.00931 0.89492 0.93601 0.93215 0.87790 0.93508 0.92681 0.85682 0.86966 0.89841 0.90686 0.91883 0.89225 0.87736 0.90006 0.92757 0.86267 0.91877 0.91693 0.93103 0.93392 0.87061 0.90801 0.93504 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -8.39 10.70 -148.98 -1.59 -9.99 16 3 C 0.08 1.78 5.23 71.98 0.38 2.15 16 4 C -0.13 -2.75 4.42 29.85 0.13 -2.62 16 5 C 0.51 15.17 7.70 87.66 0.67 15.85 16 6 O -0.59 -21.35 15.40 -3.05 -0.05 -21.40 16 7 N -0.59 -18.36 2.97 -819.05 -2.44 -20.80 16 8 C 0.10 3.67 5.89 86.36 0.51 4.18 16 9 C -0.09 -3.02 4.77 30.69 0.15 -2.88 16 10 C 0.11 3.89 0.44 2.72 0.00 3.90 16 11 C -0.15 -3.90 4.10 30.67 0.13 -3.77 16 12 C 0.11 3.10 5.82 86.34 0.50 3.60 16 13 C 0.45 20.94 5.93 87.71 0.52 21.46 16 14 O -0.61 -32.05 10.92 -3.09 -0.03 -32.08 16 15 N -0.45 -22.40 2.98 -638.71 -1.90 -24.30 16 16 C -0.34 -19.18 9.12 84.04 0.77 -18.42 16 17 H 0.07 4.42 7.26 -2.91 -0.02 4.40 16 18 C 0.00 -0.05 5.04 84.93 0.43 0.37 16 19 N -0.89 -47.22 10.59 21.66 0.23 -46.99 16 20 Si 0.98 42.30 29.58 68.60 2.03 44.33 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 22 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 24 C 0.14 6.30 4.94 86.47 0.43 6.72 16 25 C 0.04 1.21 5.49 86.25 0.47 1.68 16 26 N -0.54 -16.74 4.68 -876.16 -4.10 -20.84 16 27 C 0.02 0.39 8.74 127.69 1.12 1.50 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 32 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 33 H 0.13 2.01 7.69 -2.39 -0.02 2.00 16 34 H 0.11 2.15 7.95 -2.39 -0.02 2.14 16 35 H 0.08 3.72 5.21 -2.41 -0.01 3.71 16 36 H 0.07 2.72 7.01 -2.39 -0.02 2.71 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.09 2.47 6.58 -2.39 -0.02 2.45 16 39 H 0.10 2.17 6.37 -2.39 -0.02 2.15 16 40 H 0.08 2.13 6.40 -2.39 -0.02 2.12 16 41 H 0.05 1.94 6.47 -2.39 -0.02 1.92 16 42 H 0.12 2.30 5.94 -2.39 -0.01 2.28 16 43 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 44 H 0.06 3.19 6.80 -2.39 -0.02 3.18 16 45 H 0.05 2.30 7.65 -2.39 -0.02 2.28 16 46 H 0.05 1.38 6.19 -2.39 -0.01 1.37 16 47 H 0.11 2.83 8.00 -2.39 -0.02 2.81 16 48 H 0.07 1.50 6.47 -2.39 -0.02 1.48 16 49 H 0.05 0.83 6.22 -2.39 -0.01 0.82 16 50 H 0.08 1.53 8.06 -2.39 -0.02 1.51 16 Total: -1.00 -70.81 371.13 0.54 -70.27 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.95 Total: 26.45 kcal Atomic # 6 Polarization: 27.90 SS G_CDS: 7.45 Total: 35.35 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -8.21 Total: -112.93 kcal Atomic # 8 Polarization: -61.79 SS G_CDS: -1.68 Total: -63.47 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -70.81 0.54 -70.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096077162.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.801 kcal (2) G-P(sol) polarization free energy of solvation -70.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds