Wall clock time and date at job start Tue Mar 31 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47179 * 239.99994 * 3 2 1 5 5 H 1.48500 * 109.47392 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47270 * 120.00053 * 3 2 1 7 7 C 1.38819 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99549 * 195.94826 * 7 2 1 9 9 N 1.36931 * 120.00253 * 15.94761 * 7 2 1 10 10 C 1.46932 * 120.64312 * 27.38480 * 9 7 2 11 11 C 1.53172 * 108.77566 * 126.41307 * 10 9 7 12 12 C 1.53165 * 109.29926 * 54.79209 * 11 10 9 13 13 C 1.52842 * 109.32854 * 58.14014 * 12 11 10 14 14 C 1.53322 * 108.33000 * 68.68031 * 13 12 11 15 15 C 1.52726 * 108.37555 * 70.10948 * 14 13 12 16 16 H 1.08994 * 109.25745 * 69.38394 * 15 14 13 17 17 N 1.46902 * 109.25152 * 188.81724 * 15 14 13 18 18 C 1.48537 * 110.99974 * 306.00605 * 17 15 14 19 19 C 1.54937 * 103.22550 * 159.72289 * 18 17 15 20 20 C 1.54599 * 102.92205 * 322.58960 * 19 18 17 21 21 C 1.47901 * 111.00296 * 63.40634 * 17 15 14 22 22 C 1.50638 * 110.58525 * 309.09744 * 15 14 13 23 23 C 1.38927 * 117.72987 * 197.27718 * 22 15 14 24 24 C 1.37926 * 120.54221 * 180.28900 * 23 22 15 25 25 C 1.38264 * 119.78168 * 359.97438 * 24 23 22 26 26 C 1.37929 * 119.76261 * 359.85862 * 25 24 23 27 27 C 1.37633 * 122.60599 * 17.32757 * 22 15 14 28 28 C 1.53146 * 109.33063 * 298.44390 * 12 11 10 29 29 C 1.46931 * 120.64860 * 207.36601 * 9 7 2 30 30 H 0.96998 * 119.99686 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.58170 * 6.63086 * 10 9 7 32 32 H 1.08993 * 109.58954 * 246.20115 * 10 9 7 33 33 H 1.09003 * 109.50076 * 294.83868 * 11 10 9 34 34 H 1.09001 * 109.52605 * 174.75437 * 11 10 9 35 35 H 1.09001 * 109.69590 * 188.39261 * 13 12 11 36 36 H 1.09009 * 109.69181 * 308.93339 * 13 12 11 37 37 H 1.09000 * 109.68022 * 189.83437 * 14 13 12 38 38 H 1.09000 * 109.68057 * 310.38499 * 14 13 12 39 39 H 1.08994 * 110.66889 * 278.16170 * 18 17 15 40 40 H 1.08997 * 110.66252 * 41.29068 * 18 17 15 41 41 H 1.08997 * 110.72327 * 204.22884 * 19 18 17 42 42 H 1.08999 * 110.87333 * 81.01725 * 19 18 17 43 43 H 1.09004 * 110.30440 * 263.03968 * 20 19 18 44 44 H 1.09002 * 110.39113 * 140.92053 * 20 19 18 45 45 H 1.08995 * 109.91812 * 333.50785 * 21 17 15 46 46 H 1.09000 * 109.91833 * 94.60334 * 21 17 15 47 47 H 1.07996 * 119.72526 * 0.26668 * 23 22 15 48 48 H 1.08004 * 120.10833 * 179.97438 * 24 23 22 49 49 H 1.07998 * 120.11601 * 179.84371 * 25 24 23 50 50 H 1.08000 * 119.72982 * 180.02562 * 26 25 24 51 51 H 1.09000 * 109.50032 * 181.48047 * 28 12 11 52 52 H 1.09004 * 109.50284 * 301.58225 * 28 12 11 53 53 H 1.09005 * 109.57588 * 353.36631 * 29 9 7 54 54 H 1.09000 * 109.58262 * 113.77539 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0591 -1.2200 0.2576 9 7 1.3651 -2.3654 -0.3248 10 6 0.1973 -2.3500 -1.2163 11 6 0.4419 -3.3318 -2.3663 12 6 0.7727 -4.7124 -1.7915 13 6 -0.3798 -5.1800 -0.9032 14 6 -1.5923 -5.4657 -1.7971 15 6 -1.2989 -6.7181 -2.6205 16 1 -1.2880 -7.5868 -1.9622 17 7 -2.3507 -6.8906 -3.6314 18 6 -3.6969 -6.8942 -3.0036 19 6 -4.6397 -6.5530 -4.1848 20 6 -3.8212 -5.5203 -4.9934 21 6 -2.3553 -5.7635 -4.5891 22 6 0.0362 -6.5992 -3.3080 23 6 0.2966 -7.4593 -4.3675 24 6 1.5026 -7.4047 -5.0345 25 6 2.4608 -6.4865 -4.6469 26 6 2.2028 -5.6293 -3.5975 27 6 0.9885 -5.6822 -2.9252 28 6 2.0528 -4.6202 -0.9558 29 6 1.8275 -3.6533 0.2105 30 1 -0.4849 0.8401 0.0004 31 1 0.0566 -1.3461 -1.6166 32 1 -0.6905 -2.6519 -0.6607 33 1 1.2766 -2.9807 -2.9731 34 1 -0.4536 -3.3999 -2.9839 35 1 -0.0910 -6.0884 -0.3745 36 1 -0.6289 -4.3998 -0.1837 37 1 -2.4739 -5.6315 -1.1779 38 1 -1.7646 -4.6204 -2.4632 39 1 -3.9294 -7.8786 -2.5977 40 1 -3.7613 -6.1317 -2.2274 41 1 -5.5677 -6.1110 -3.8223 42 1 -4.8450 -7.4386 -4.7862 43 1 -4.1235 -4.5071 -4.7287 44 1 -3.9512 -5.6861 -6.0629 45 1 -1.9482 -4.8710 -4.1142 46 1 -1.7625 -6.0199 -5.4671 47 1 -0.4514 -8.1769 -4.6710 48 1 1.6977 -8.0770 -5.8569 49 1 3.4079 -6.4407 -5.1638 50 1 2.9515 -4.9120 -3.2954 51 1 2.3053 -5.6067 -0.5669 52 1 2.8688 -4.2545 -1.5791 53 1 2.7627 -3.5093 0.7517 54 1 1.0730 -4.0614 0.8830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096079646.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:27 Heat of formation + Delta-G solvation = 40.698516 kcal Electronic energy + Delta-G solvation = -32019.019698 eV Core-core repulsion = 28340.964273 eV Total energy + Delta-G solvation = -3678.055424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.221 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.13967 -39.77926 -38.85523 -36.35594 -34.93932 -33.11707 -31.75926 -31.18582 -31.03583 -30.38937 -29.64179 -27.33908 -25.82490 -24.36966 -24.07171 -23.69224 -22.87712 -21.96562 -21.66466 -20.27453 -19.39413 -18.38650 -17.65173 -17.00469 -16.85090 -16.73987 -16.28767 -16.12525 -15.53826 -15.30453 -15.15088 -14.87637 -14.73858 -14.71277 -14.50616 -14.23500 -13.95223 -13.60190 -13.31018 -13.21444 -13.07095 -12.97473 -12.90282 -12.62235 -12.58562 -12.38807 -12.32214 -12.22823 -12.18074 -12.04239 -12.01217 -11.88570 -11.79243 -11.58093 -11.35635 -11.14582 -11.03066 -10.83532 -10.50828 -9.54055 -9.41071 -9.25778 -8.65287 -7.86809 -5.31541 0.53436 0.59718 1.44913 1.47173 1.53754 2.50390 2.88494 3.10889 3.27166 3.59690 3.66819 3.75509 3.77984 3.85731 3.88710 4.03215 4.05800 4.18908 4.28132 4.30956 4.35633 4.40469 4.46913 4.49977 4.53108 4.60161 4.67331 4.68310 4.73910 4.77375 4.83573 4.90184 4.92492 4.96506 4.99549 5.02583 5.06453 5.12302 5.16089 5.17835 5.23018 5.25326 5.26342 5.34869 5.37582 5.38678 5.43152 5.51398 5.63616 5.70530 5.75504 5.76926 5.84241 6.03130 6.13624 6.24293 6.39175 7.15436 7.87429 8.38952 9.18821 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012852 B = 0.003839 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.198357 B = 7292.287551 C = 8428.237224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.964 3.036 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.263 4.263 8 H 0.065 0.935 9 N -0.607 5.607 10 C 0.184 3.816 11 C -0.106 4.106 12 C 0.000 4.000 13 C -0.101 4.101 14 C -0.145 4.145 15 C 0.126 3.874 16 H 0.096 0.904 17 N -0.503 5.503 18 C 0.022 3.978 19 C -0.115 4.115 20 C -0.131 4.131 21 C 0.032 3.968 22 C -0.081 4.081 23 C -0.099 4.099 24 C -0.133 4.133 25 C -0.122 4.122 26 C -0.135 4.135 27 C -0.063 4.063 28 C -0.109 4.109 29 C 0.143 3.857 30 H 0.249 0.751 31 H 0.049 0.951 32 H 0.003 0.997 33 H 0.040 0.960 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.032 0.968 46 H 0.071 0.929 47 H 0.136 0.864 48 H 0.142 0.858 49 H 0.136 0.864 50 H 0.113 0.887 51 H 0.073 0.927 52 H 0.055 0.945 53 H 0.050 0.950 54 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.840 -18.195 -10.522 21.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.792 3.208 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.393 4.393 8 H 0.082 0.918 9 N -0.331 5.331 10 C 0.059 3.941 11 C -0.145 4.145 12 C 0.000 4.000 13 C -0.139 4.139 14 C -0.184 4.184 15 C 0.017 3.983 16 H 0.114 0.886 17 N -0.226 5.226 18 C -0.105 4.105 19 C -0.153 4.153 20 C -0.169 4.169 21 C -0.095 4.095 22 C -0.082 4.082 23 C -0.117 4.117 24 C -0.150 4.150 25 C -0.140 4.140 26 C -0.153 4.153 27 C -0.063 4.063 28 C -0.148 4.148 29 C 0.017 3.983 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.021 0.979 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.111 0.889 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.050 0.950 46 H 0.090 0.910 47 H 0.154 0.846 48 H 0.160 0.840 49 H 0.154 0.846 50 H 0.131 0.869 51 H 0.091 0.909 52 H 0.074 0.926 53 H 0.068 0.932 54 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -4.829 -18.565 -10.769 21.999 hybrid contribution 0.382 2.335 0.743 2.480 sum -4.447 -16.230 -10.026 19.589 Atomic orbital electron populations 1.70162 1.06568 1.25739 1.55618 1.25731 0.96030 1.01260 1.01401 0.85389 0.77621 0.79469 0.78277 1.20629 1.21961 1.20090 1.19497 0.92538 0.86039 1.41232 0.91757 1.44247 1.33798 1.02181 1.52846 1.20549 0.87651 0.96927 0.89014 1.22032 0.99468 0.95069 0.97949 1.19263 0.95527 0.92479 0.92745 1.21560 0.94340 1.00661 0.97372 1.22212 0.98355 0.98818 0.98992 1.20515 0.88771 0.97059 0.91910 0.88572 1.65064 1.02870 1.40820 1.13830 1.23426 0.88187 1.01983 0.96905 1.22441 0.97622 0.99159 0.96088 1.22401 0.93758 0.99470 1.01288 1.22845 0.97604 0.92577 0.96521 1.19488 0.94792 0.96378 0.97513 1.21276 0.97117 0.98569 0.94764 1.21338 0.93641 0.99353 1.00707 1.21296 1.00219 0.95736 0.96772 1.21288 0.96930 1.00038 0.97076 1.19655 0.94155 0.95719 0.96803 1.22023 0.96454 0.98985 0.97345 1.21051 0.97094 0.86033 0.94093 0.94197 0.93231 0.97906 0.94103 0.93036 0.91174 0.92817 0.90707 0.92285 0.88950 0.93407 0.90209 0.90064 0.92065 0.90186 0.95009 0.91012 0.84631 0.83991 0.84617 0.86939 0.90891 0.92612 0.93170 0.96346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 11.07 21.65 0.24 -55.63 16 2 C -0.05 -2.77 4.95 84.86 0.42 -2.35 16 3 Si 0.96 45.54 29.58 68.60 2.03 47.57 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.26 -14.72 9.60 84.04 0.81 -13.91 16 8 H 0.06 3.52 7.88 -2.91 -0.02 3.49 16 9 N -0.61 -30.93 3.00 -699.16 -2.10 -33.02 16 10 C 0.18 9.05 4.84 86.35 0.42 9.47 16 11 C -0.11 -4.22 4.60 30.71 0.14 -4.08 16 12 C 0.00 0.00 0.39 -52.86 -0.02 -0.02 16 13 C -0.10 -3.20 3.87 30.65 0.12 -3.08 16 14 C -0.15 -3.98 4.29 30.61 0.13 -3.85 16 15 C 0.13 3.01 2.38 44.06 0.11 3.12 16 16 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 17 N -0.50 -10.74 4.54 -862.91 -3.92 -14.65 16 18 C 0.02 0.41 6.35 86.65 0.55 0.96 16 19 C -0.12 -1.82 7.06 31.80 0.22 -1.59 16 20 C -0.13 -2.42 6.93 31.47 0.22 -2.20 16 21 C 0.03 0.74 5.32 86.44 0.46 1.20 16 22 C -0.08 -2.12 4.60 -19.86 -0.09 -2.21 16 23 C -0.10 -2.27 8.47 22.36 0.19 -2.08 16 24 C -0.13 -2.81 10.05 22.20 0.22 -2.58 16 25 C -0.12 -2.85 10.05 22.20 0.22 -2.63 16 26 C -0.14 -3.82 8.93 22.36 0.20 -3.62 16 27 C -0.06 -1.85 4.70 -19.83 -0.09 -1.94 16 28 C -0.11 -3.79 4.39 30.70 0.13 -3.66 16 29 C 0.14 6.00 6.05 86.35 0.52 6.53 16 30 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.05 2.80 5.96 -2.39 -0.01 2.79 16 32 H 0.00 0.15 6.47 -2.39 -0.02 0.14 16 33 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 34 H 0.05 1.96 6.42 -2.39 -0.02 1.95 16 35 H 0.07 2.01 8.09 -2.39 -0.02 1.99 16 36 H 0.05 2.03 4.99 -2.38 -0.01 2.01 16 37 H 0.07 1.89 6.48 -2.39 -0.02 1.88 16 38 H 0.06 1.84 4.05 -2.39 -0.01 1.83 16 39 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.05 0.97 5.62 -2.39 -0.01 0.95 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.03 0.88 5.53 -2.39 -0.01 0.87 16 46 H 0.07 1.67 7.67 -2.39 -0.02 1.65 16 47 H 0.14 2.82 7.62 -2.91 -0.02 2.80 16 48 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 49 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 50 H 0.11 3.33 6.34 -2.91 -0.02 3.31 16 51 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 52 H 0.06 2.00 6.45 -2.38 -0.02 1.98 16 53 H 0.05 2.08 7.93 -2.38 -0.02 2.07 16 54 H 0.02 0.79 6.88 -2.39 -0.02 0.77 16 Total: -1.00 -62.52 381.23 2.02 -60.50 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.89 Total: 23.80 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 4.88 Total: -28.56 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -5.78 Total: -103.31 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -62.52 2.02 -60.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096079646.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.195 kcal (2) G-P(sol) polarization free energy of solvation -62.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds