Wall clock time and date at job start Tue Mar 31 2020 05:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99870 * 2 1 4 4 H 1.48497 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46967 * 300.00066 * 3 2 1 6 6 H 1.48499 * 109.46873 * 60.00071 * 3 2 1 7 7 C 1.38806 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00231 * 155.18730 * 7 2 1 9 9 N 1.36945 * 120.00087 * 335.18550 * 7 2 1 10 10 C 1.46925 * 120.64033 * 327.45334 * 9 7 2 11 11 C 1.52708 * 109.02935 * 233.51490 * 10 9 7 12 12 C 1.53167 * 109.37872 * 305.45861 * 11 10 9 13 13 C 1.52853 * 109.32328 * 301.71643 * 12 11 10 14 14 C 1.53317 * 108.33157 * 291.29421 * 13 12 11 15 15 C 1.52731 * 108.37812 * 289.89649 * 14 13 12 16 16 H 1.09006 * 109.25288 * 290.66872 * 15 14 13 17 17 N 1.46894 * 109.25601 * 171.20140 * 15 14 13 18 18 C 1.48534 * 110.99804 * 298.40233 * 17 15 14 19 19 C 1.54943 * 103.22861 * 159.72263 * 18 17 15 20 20 C 1.54598 * 102.92031 * 322.58751 * 19 18 17 21 21 C 1.47901 * 111.00651 * 55.80103 * 17 15 14 22 22 C 1.50628 * 110.58088 * 50.91352 * 15 14 13 23 23 C 1.38930 * 117.73097 * 162.71592 * 22 15 14 24 24 C 1.37923 * 120.54569 * 179.73958 * 23 22 15 25 25 C 1.38266 * 119.78230 * 359.97438 * 24 23 22 26 26 C 1.37934 * 119.76249 * 0.13500 * 25 24 23 27 27 C 1.37634 * 122.60750 * 342.66982 * 22 15 14 28 28 C 1.53141 * 109.33391 * 61.41040 * 12 11 10 29 29 C 1.46929 * 120.64602 * 147.72854 * 9 7 2 30 30 H 0.97000 * 119.99993 * 175.96371 * 1 2 3 31 31 H 1.08999 * 109.58779 * 353.35513 * 10 9 7 32 32 H 1.08998 * 109.58676 * 113.78586 * 10 9 7 33 33 H 1.08993 * 109.57666 * 185.41109 * 11 10 9 34 34 H 1.09008 * 109.37751 * 65.37273 * 11 10 9 35 35 H 1.09001 * 109.68842 * 51.00150 * 13 12 11 36 36 H 1.09003 * 109.68949 * 171.54583 * 13 12 11 37 37 H 1.09005 * 109.68552 * 49.61946 * 14 13 12 38 38 H 1.08997 * 109.68207 * 170.17396 * 14 13 12 39 39 H 1.09000 * 110.66955 * 278.15580 * 18 17 15 40 40 H 1.09002 * 110.66700 * 41.28681 * 18 17 15 41 41 H 1.08994 * 110.72505 * 204.23138 * 19 18 17 42 42 H 1.08999 * 110.87679 * 81.01222 * 19 18 17 43 43 H 1.09005 * 110.30722 * 263.04162 * 20 19 18 44 44 H 1.09001 * 110.30866 * 140.87029 * 20 19 18 45 45 H 1.09009 * 109.91326 * 333.50973 * 21 17 15 46 46 H 1.09000 * 109.91849 * 94.60213 * 21 17 15 47 47 H 1.08000 * 119.72289 * 359.71809 * 23 22 15 48 48 H 1.07997 * 120.11026 * 179.97438 * 24 23 22 49 49 H 1.08001 * 120.11971 * 180.11409 * 25 24 23 50 50 H 1.07993 * 119.73317 * 179.97438 * 26 25 24 51 51 H 1.09003 * 109.49937 * 178.52948 * 28 12 11 52 52 H 1.09002 * 109.50228 * 58.42299 * 28 12 11 53 53 H 1.09001 * 109.58249 * 246.23909 * 29 9 7 54 54 H 1.08996 * 109.58165 * 6.51420 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0155 -1.2454 -0.3919 9 7 1.4205 -2.3331 0.4988 10 6 0.4649 -2.2511 1.6118 11 6 0.9135 -3.1966 2.7239 12 6 1.0898 -4.6065 2.1519 13 6 -0.2300 -5.0716 1.5370 14 6 -1.2397 -5.2892 2.6700 15 6 -0.8109 -6.5191 3.4676 16 1 -0.9528 -7.4109 2.8569 17 7 -1.6373 -6.6242 4.6775 18 6 -1.4538 -5.4378 5.5521 19 6 -2.7216 -5.4543 6.4427 20 6 -3.8242 -5.9231 5.4657 21 6 -3.0760 -6.6546 4.3359 22 6 0.6386 -6.4145 3.8636 23 6 1.0918 -7.2430 4.8826 24 6 2.4094 -7.1993 5.2879 25 6 3.2876 -6.3245 4.6754 26 6 2.8392 -5.4995 3.6650 27 6 1.5119 -5.5403 3.2574 28 6 2.1735 -4.5829 1.0701 29 6 1.7355 -3.6527 -0.0653 30 1 -0.4850 -0.8380 -0.0591 31 1 0.4340 -1.2302 1.9925 32 1 -0.5261 -2.5441 1.2649 33 1 0.1616 -3.2154 3.5127 34 1 1.8619 -2.8490 3.1335 35 1 -0.6045 -4.3106 0.8523 36 1 -0.0748 -6.0063 0.9980 37 1 -1.2540 -4.4156 3.3218 38 1 -2.2327 -5.4513 2.2508 39 1 -0.5552 -5.5433 6.1600 40 1 -1.4127 -4.5247 4.9582 41 1 -2.9404 -4.4557 6.8208 42 1 -2.6093 -6.1607 7.2652 43 1 -4.3662 -5.0654 5.0672 44 1 -4.5102 -6.6049 5.9685 45 1 -3.2434 -6.1432 3.3879 46 1 -3.4195 -7.6867 4.2664 47 1 0.4065 -7.9267 5.3616 48 1 2.7540 -7.8462 6.0810 49 1 4.3210 -6.2870 4.9871 50 1 3.5255 -4.8162 3.1871 51 1 2.3197 -5.5899 0.6794 52 1 3.1075 -4.2192 1.4985 53 1 0.8507 -4.0624 -0.5526 54 1 2.5414 -3.5560 -0.7928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096079647.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:31 Heat of formation + Delta-G solvation = 35.559168 kcal Electronic energy + Delta-G solvation = -32047.242684 eV Core-core repulsion = 28368.964401 eV Total energy + Delta-G solvation = -3678.278283 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.221 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.20913 -39.87725 -38.96890 -36.54160 -35.05850 -33.09322 -31.93612 -31.25551 -31.10295 -30.30867 -29.66914 -27.23156 -25.84646 -24.45435 -24.08374 -23.80710 -22.92734 -22.13268 -21.57807 -20.38249 -19.66769 -18.79520 -17.81816 -16.89313 -16.75323 -16.56489 -16.37907 -16.04649 -15.69644 -15.40351 -15.36512 -15.11140 -14.87781 -14.77408 -14.65417 -14.30218 -13.90092 -13.67279 -13.51882 -13.38125 -13.14205 -12.97898 -12.87911 -12.58312 -12.52007 -12.47815 -12.28613 -12.21891 -12.11751 -12.03319 -11.98743 -11.92241 -11.87227 -11.48206 -11.36782 -11.25359 -11.09166 -10.87866 -10.45719 -9.57873 -9.45600 -9.29665 -8.88635 -8.25923 -5.45329 0.49340 0.55633 1.55536 1.63266 1.79752 2.62412 2.84382 3.06564 3.19874 3.50428 3.53999 3.68365 3.70795 3.78470 3.83173 3.97585 4.01106 4.11926 4.18280 4.25709 4.30166 4.32135 4.37108 4.41561 4.44063 4.53891 4.57541 4.59679 4.63426 4.70549 4.76304 4.79733 4.82916 4.89186 4.92408 4.97454 5.00361 5.06427 5.08207 5.09139 5.10699 5.15402 5.20297 5.22037 5.25297 5.30769 5.34657 5.36143 5.48401 5.68266 5.70895 5.77092 5.86750 5.99006 6.09572 6.20327 6.38858 7.07380 7.76678 8.24182 8.97359 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.003859 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.630364 B = 7254.547729 C = 8382.830205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.069 4.069 3 Si 1.116 2.884 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.359 4.359 8 H 0.044 0.956 9 N -0.613 5.613 10 C 0.168 3.832 11 C -0.102 4.102 12 C 0.001 3.999 13 C -0.102 4.102 14 C -0.147 4.147 15 C 0.126 3.874 16 H 0.095 0.905 17 N -0.503 5.503 18 C 0.029 3.971 19 C -0.119 4.119 20 C -0.127 4.127 21 C 0.023 3.977 22 C -0.079 4.079 23 C -0.098 4.098 24 C -0.131 4.131 25 C -0.122 4.122 26 C -0.135 4.135 27 C -0.064 4.064 28 C -0.108 4.108 29 C 0.145 3.855 30 H 0.254 0.746 31 H 0.031 0.969 32 H 0.010 0.990 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.035 0.965 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.049 0.951 46 H 0.088 0.912 47 H 0.137 0.863 48 H 0.143 0.857 49 H 0.136 0.864 50 H 0.111 0.889 51 H 0.073 0.927 52 H 0.055 0.945 53 H 0.018 0.982 54 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.528 -17.763 13.265 22.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.266 4.266 3 Si 0.941 3.059 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.489 4.489 8 H 0.062 0.938 9 N -0.338 5.338 10 C 0.042 3.958 11 C -0.141 4.141 12 C 0.001 3.999 13 C -0.140 4.140 14 C -0.186 4.186 15 C 0.017 3.983 16 H 0.113 0.887 17 N -0.225 5.225 18 C -0.099 4.099 19 C -0.157 4.157 20 C -0.165 4.165 21 C -0.104 4.104 22 C -0.080 4.080 23 C -0.116 4.116 24 C -0.149 4.149 25 C -0.140 4.140 26 C -0.153 4.153 27 C -0.064 4.064 28 C -0.147 4.147 29 C 0.020 3.980 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.106 0.894 47 H 0.155 0.845 48 H 0.161 0.839 49 H 0.154 0.846 50 H 0.129 0.871 51 H 0.092 0.908 52 H 0.073 0.927 53 H 0.036 0.964 54 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.526 -16.620 13.559 21.597 hybrid contribution 0.007 -0.377 -1.023 1.090 sum -2.520 -16.996 12.536 21.269 Atomic orbital electron populations 1.70846 1.07550 1.29322 1.50307 1.27209 0.96583 1.04839 0.98010 0.82846 0.74256 0.72039 0.76758 1.19951 1.21534 1.21354 1.20181 0.97015 0.89762 1.41893 0.93828 1.44244 1.51638 1.02476 1.35401 1.20609 0.90924 0.96616 0.87634 1.21861 1.00135 0.94772 0.97348 1.19239 0.95276 0.92548 0.92817 1.21562 0.94155 1.00797 0.97442 1.22235 0.99156 0.99256 0.97915 1.20495 0.89614 0.97355 0.90798 0.88697 1.65054 1.05208 1.38356 1.13926 1.23263 0.99343 0.91923 0.95334 1.22459 0.93540 1.01848 0.97900 1.22377 0.97902 1.00210 0.96004 1.23043 0.87553 1.01671 0.98176 1.19459 0.94413 0.96757 0.97333 1.21283 0.95871 0.98514 0.95975 1.21351 0.93438 0.99418 1.00653 1.21303 1.00637 0.96025 0.95987 1.21280 0.95375 1.00158 0.98502 1.19592 0.93761 0.96125 0.96958 1.22006 0.97611 0.99069 0.96039 1.21038 0.97190 0.85516 0.94297 0.93633 0.95017 0.97244 0.92385 0.93716 0.92996 0.91113 0.92003 0.90618 0.90793 0.94698 0.90873 0.90133 0.91698 0.89657 0.93295 0.89400 0.84540 0.83891 0.84571 0.87060 0.90830 0.92657 0.96398 0.93662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.99 12.66 21.65 0.27 -57.71 16 2 C -0.07 -4.00 4.66 84.86 0.40 -3.61 16 3 Si 1.12 51.98 29.99 68.60 2.06 54.04 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 7 C -0.36 -20.55 9.44 84.03 0.79 -19.75 16 8 H 0.04 2.53 7.94 -2.91 -0.02 2.51 16 9 N -0.61 -31.31 2.79 -700.07 -1.95 -33.26 16 10 C 0.17 8.05 4.26 86.20 0.37 8.41 16 11 C -0.10 -3.96 4.58 30.55 0.14 -3.82 16 12 C 0.00 0.04 0.39 -52.86 -0.02 0.02 16 13 C -0.10 -3.13 3.86 30.65 0.12 -3.02 16 14 C -0.15 -3.90 4.47 30.61 0.14 -3.76 16 15 C 0.13 2.93 2.37 44.06 0.10 3.03 16 16 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 17 N -0.50 -10.40 4.51 -862.88 -3.89 -14.29 16 18 C 0.03 0.63 5.50 86.65 0.48 1.11 16 19 C -0.12 -2.04 7.06 31.80 0.22 -1.82 16 20 C -0.13 -2.01 6.93 31.47 0.22 -1.79 16 21 C 0.02 0.41 6.45 86.45 0.56 0.97 16 22 C -0.08 -2.01 4.64 -19.86 -0.09 -2.10 16 23 C -0.10 -2.19 8.40 22.36 0.19 -2.00 16 24 C -0.13 -2.68 10.05 22.20 0.22 -2.46 16 25 C -0.12 -2.77 10.05 22.20 0.22 -2.54 16 26 C -0.14 -3.75 8.93 22.36 0.20 -3.55 16 27 C -0.06 -1.84 4.70 -19.83 -0.09 -1.93 16 28 C -0.11 -3.79 4.38 30.70 0.13 -3.65 16 29 C 0.14 6.20 6.06 86.36 0.52 6.72 16 30 H 0.25 16.00 6.84 -92.71 -0.63 15.37 16 31 H 0.03 1.74 6.66 -2.39 -0.02 1.72 16 32 H 0.01 0.48 6.20 -2.39 -0.01 0.46 16 33 H 0.06 2.12 6.48 -2.39 -0.02 2.10 16 34 H 0.04 1.83 8.10 -2.38 -0.02 1.81 16 35 H 0.05 1.90 5.00 -2.39 -0.01 1.89 16 36 H 0.07 2.00 8.09 -2.39 -0.02 1.98 16 37 H 0.06 1.84 3.91 -2.38 -0.01 1.83 16 38 H 0.08 1.86 6.26 -2.39 -0.01 1.84 16 39 H 0.07 1.70 7.37 -2.39 -0.02 1.68 16 40 H 0.03 0.90 5.65 -2.39 -0.01 0.89 16 41 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.05 0.95 5.39 -2.38 -0.01 0.93 16 46 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.14 2.75 7.62 -2.91 -0.02 2.72 16 48 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 49 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 50 H 0.11 3.27 6.34 -2.91 -0.02 3.25 16 51 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16 52 H 0.05 2.01 6.45 -2.39 -0.02 1.99 16 53 H 0.02 0.77 6.88 -2.39 -0.02 0.75 16 54 H 0.04 1.97 7.93 -2.39 -0.02 1.95 16 Total: -1.00 -64.66 380.66 2.33 -62.33 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 1.02 Total: 24.44 kcal Atomic # 6 Polarization: -40.36 SS G_CDS: 4.82 Total: -35.55 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -5.57 Total: -105.26 kcal Atomic # 14 Polarization: 51.98 SS G_CDS: 2.06 Total: 54.04 kcal Total: -64.66 2.33 -62.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096079647.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.889 kcal (2) G-P(sol) polarization free energy of solvation -64.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds