Wall clock time and date at job start Tue Mar 31 2020 05:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86806 * 120.00178 * 2 1 4 4 H 1.48502 * 109.46671 * 269.99701 * 3 2 1 5 5 H 1.48500 * 109.46960 * 29.99500 * 3 2 1 6 6 H 1.48492 * 109.47241 * 149.99836 * 3 2 1 7 7 C 1.40053 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99505 * 180.02562 * 7 2 1 9 9 C 1.46366 * 119.99826 * 0.02562 * 7 2 1 10 10 O 1.21685 * 120.00409 * 0.02562 * 9 7 2 11 11 N 1.34778 * 120.00006 * 179.97438 * 9 7 2 12 12 N 1.40099 * 120.00497 * 180.02562 * 11 9 7 13 13 C 1.34769 * 120.00460 * 180.02562 * 12 11 9 14 14 O 1.21288 * 120.00111 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00111 * 179.97438 * 13 12 11 16 16 O 1.42900 * 109.47328 * 34.99563 * 15 13 12 17 17 C 1.50700 * 109.47102 * 154.99708 * 15 13 12 18 18 C 1.38239 * 119.99898 * 64.72777 * 17 15 13 19 19 C 1.38237 * 119.99562 * 179.76130 * 18 17 15 20 20 C 1.38230 * 120.00420 * 0.51348 * 19 18 17 21 21 C 1.38240 * 120.00027 * 359.74283 * 20 19 18 22 22 C 1.38232 * 120.00074 * 244.99823 * 17 15 13 23 23 C 1.50701 * 109.47100 * 274.99762 * 15 13 12 24 24 C 1.38238 * 119.99710 * 319.99339 * 23 15 13 25 25 C 1.38234 * 119.99481 * 179.76793 * 24 23 15 26 26 C 1.38229 * 120.00416 * 0.50288 * 25 24 23 27 27 C 1.38236 * 120.00029 * 359.75362 * 26 25 24 28 28 C 1.38234 * 119.99883 * 359.97438 * 27 26 25 29 29 H 0.96998 * 120.00114 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99598 * 359.97438 * 11 9 7 31 31 H 0.97008 * 119.99248 * 359.97438 * 12 11 9 32 32 H 0.96704 * 113.99895 * 60.00618 * 16 15 13 33 33 H 1.08000 * 120.00114 * 359.97438 * 18 17 15 34 34 H 1.08004 * 119.99955 * 180.23042 * 19 18 17 35 35 H 1.07996 * 120.00577 * 179.71893 * 20 19 18 36 36 H 1.07995 * 120.00288 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.00129 * 0.02562 * 22 17 15 38 38 H 1.07997 * 119.99988 * 359.97438 * 24 23 15 39 39 H 1.08008 * 119.99406 * 180.23787 * 25 24 23 40 40 H 1.08003 * 119.99977 * 179.72423 * 26 25 24 41 41 H 1.07993 * 120.00242 * 179.97438 * 27 26 25 42 42 H 1.07992 * 120.00468 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4883 2.0463 -1.4001 5 1 1.4382 2.6527 0.6999 6 1 3.5382 1.4402 0.7000 7 6 2.0069 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0582 -2.4805 -0.0004 11 7 1.9489 -3.6477 0.0005 12 7 1.2485 -4.8610 0.0000 13 6 1.9223 -6.0282 0.0005 14 8 3.1351 -6.0282 0.0010 15 6 1.1688 -7.3332 0.0005 16 8 -0.0249 -7.1941 -0.7726 17 6 2.0330 -8.4122 -0.5994 18 6 3.1999 -8.7956 0.0348 19 6 3.9900 -9.7888 -0.5130 20 6 3.6188 -10.3913 -1.7004 21 6 2.4546 -10.0042 -2.3375 22 6 1.6617 -9.0147 -1.7869 23 6 0.8098 -7.7061 1.4159 24 6 1.7183 -7.4983 2.4369 25 6 1.3873 -7.8358 3.7359 26 6 0.1518 -8.3907 4.0124 27 6 -0.7547 -8.6034 2.9906 28 6 -0.4258 -8.2607 1.6924 29 1 -0.4850 0.8400 -0.0004 30 1 2.9189 -3.6476 0.0002 31 1 0.2784 -4.8609 0.0000 32 1 0.1305 -6.9545 -1.6965 33 1 3.4925 -8.3216 0.9601 34 1 4.8999 -10.0910 -0.0156 35 1 4.2385 -11.1640 -2.1308 36 1 2.1648 -10.4746 -3.2654 37 1 0.7525 -8.7119 -2.2849 38 1 2.6854 -7.0692 2.2201 39 1 2.0957 -7.6699 4.5341 40 1 -0.1051 -8.6585 5.0266 41 1 -1.7197 -9.0373 3.2065 42 1 -1.1338 -8.4272 0.8941 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096191232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:57 Heat of formation + Delta-G solvation = -28.438666 kcal Electronic energy + Delta-G solvation = -29126.738370 eV Core-core repulsion = 25038.185649 eV Total energy + Delta-G solvation = -4088.552721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.00866 -38.74867 -38.71854 -37.21995 -36.65670 -34.19867 -32.58641 -32.52732 -30.96931 -30.83213 -30.47893 -30.05833 -26.85001 -25.88472 -23.01641 -22.46032 -22.17760 -21.88807 -20.51531 -20.16321 -18.52748 -17.63834 -17.20235 -16.76078 -16.42635 -15.77451 -15.51067 -15.39475 -14.95599 -14.73637 -14.60459 -14.39112 -14.19120 -13.85668 -13.56676 -13.53527 -13.19461 -12.84176 -12.67096 -12.57210 -12.54275 -12.37903 -11.69960 -11.55346 -11.41528 -11.15924 -11.12628 -11.05498 -10.72858 -10.66473 -10.39125 -10.14308 -9.66252 -8.98425 -8.97105 -8.90562 -8.87833 -8.68696 -7.96281 -7.19332 -6.38953 -4.84393 1.12140 1.33974 1.37189 1.41798 2.70325 2.79618 3.07517 3.14979 3.19656 3.66585 3.68993 3.93097 4.03317 4.39668 4.46875 4.59215 4.72195 4.90393 4.94594 4.96737 5.00738 5.07383 5.13891 5.42532 5.49149 5.55622 5.56959 5.59373 5.65275 5.81802 5.90040 5.99336 6.02939 6.35200 6.39538 6.45893 6.48515 6.49336 6.53947 6.91209 6.94481 7.12354 7.27533 7.33782 7.73959 7.89366 8.14510 8.73583 8.83346 9.18951 10.35858 10.53943 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.003260 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.425741 B = 8586.516225 C = 9659.286116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.087 3.913 3 Si 0.917 3.083 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.531 4.531 8 H 0.075 0.925 9 C 0.554 3.446 10 O -0.577 6.577 11 N -0.561 5.561 12 N -0.492 5.492 13 C 0.478 3.522 14 O -0.547 6.547 15 C 0.219 3.781 16 O -0.540 6.540 17 C -0.098 4.098 18 C -0.072 4.072 19 C -0.125 4.125 20 C -0.116 4.116 21 C -0.125 4.125 22 C -0.106 4.106 23 C -0.074 4.074 24 C -0.105 4.105 25 C -0.119 4.119 26 C -0.114 4.114 27 C -0.125 4.125 28 C -0.083 4.083 29 H 0.272 0.728 30 H 0.413 0.587 31 H 0.430 0.570 32 H 0.388 0.612 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 -19.776 1.211 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.134 4.134 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.569 4.569 8 H 0.093 0.907 9 C 0.359 3.641 10 O -0.458 6.458 11 N -0.315 5.315 12 N -0.233 5.233 13 C 0.260 3.740 14 O -0.425 6.425 15 C 0.173 3.827 16 O -0.347 6.347 17 C -0.099 4.099 18 C -0.090 4.090 19 C -0.143 4.143 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.124 4.124 23 C -0.075 4.075 24 C -0.122 4.122 25 C -0.137 4.137 26 C -0.132 4.132 27 C -0.143 4.143 28 C -0.101 4.101 29 H 0.083 0.917 30 H 0.252 0.748 31 H 0.271 0.729 32 H 0.238 0.762 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.146 -19.768 1.771 19.963 hybrid contribution 0.705 0.982 -0.553 1.329 sum 2.851 -18.786 1.218 19.040 Atomic orbital electron populations 1.70005 1.07132 1.27848 1.34016 1.25719 0.94765 1.00436 0.92445 0.86206 0.80087 0.80552 0.79030 1.19524 1.20276 1.18660 1.20678 0.93920 0.87856 1.54492 0.90663 1.18661 0.87673 0.80748 0.77010 1.90627 1.13728 1.85748 1.55735 1.45978 1.07669 0.94390 1.83444 1.44656 1.09666 0.98442 1.70564 1.20812 0.88675 0.84624 0.79907 1.90692 1.12952 1.86749 1.52107 1.18635 0.83737 0.89953 0.90344 1.86541 1.29317 1.92309 1.26502 1.19791 0.96278 0.97676 0.96171 1.21040 0.92949 0.95067 0.99927 1.21128 0.99844 0.96950 0.96396 1.21171 0.96834 0.99825 0.95581 1.21038 0.95252 0.97986 1.00070 1.20908 0.99833 0.96759 0.94906 1.19083 0.95682 1.01470 0.91260 1.21102 0.99520 0.99096 0.92529 1.21071 0.97117 0.99398 0.96153 1.21202 0.93998 0.98843 0.99199 1.21151 0.99615 1.00774 0.92762 1.20961 0.95589 0.96550 0.97037 0.91699 0.74814 0.72868 0.76218 0.85505 0.85980 0.86188 0.85971 0.85554 0.85324 0.85729 0.86011 0.85823 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.95 11.83 55.55 0.66 -21.29 16 2 C 0.09 2.35 5.50 -17.37 -0.10 2.25 16 3 Si 0.92 19.47 29.56 -169.99 -5.02 14.44 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.53 -14.54 9.54 -35.63 -0.34 -14.88 16 8 H 0.08 1.88 7.85 -52.49 -0.41 1.47 16 9 C 0.55 15.38 7.86 -12.99 -0.10 15.28 16 10 O -0.58 -17.87 14.86 5.20 0.08 -17.80 16 11 N -0.56 -13.08 6.25 30.19 0.19 -12.89 16 12 N -0.49 -10.00 6.17 31.22 0.19 -9.80 16 13 C 0.48 8.56 5.78 -10.99 -0.06 8.49 16 14 O -0.55 -10.79 14.21 5.55 0.08 -10.71 16 15 C 0.22 3.18 1.01 -94.08 -0.10 3.09 16 16 O -0.54 -6.92 10.16 -35.23 -0.36 -7.28 16 17 C -0.10 -1.34 4.58 -104.62 -0.48 -1.82 16 18 C -0.07 -0.98 7.89 -39.58 -0.31 -1.29 16 19 C -0.13 -1.45 10.05 -39.58 -0.40 -1.85 16 20 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 21 C -0.13 -1.32 10.05 -39.58 -0.40 -1.71 16 22 C -0.11 -1.24 9.23 -39.58 -0.37 -1.61 16 23 C -0.07 -1.07 4.61 -104.62 -0.48 -1.55 16 24 C -0.10 -1.49 7.83 -39.58 -0.31 -1.80 16 25 C -0.12 -1.46 10.05 -39.59 -0.40 -1.86 16 26 C -0.11 -1.28 10.05 -39.59 -0.40 -1.67 16 27 C -0.13 -1.44 10.05 -39.58 -0.40 -1.83 16 28 C -0.08 -1.09 9.36 -39.58 -0.37 -1.46 16 29 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 30 H 0.41 9.11 7.98 -182.60 -1.46 7.65 16 31 H 0.43 8.83 7.44 -182.59 -1.36 7.47 16 32 H 0.39 3.93 7.85 45.56 0.36 4.29 16 33 H 0.13 1.78 5.45 -52.49 -0.29 1.49 16 34 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.13 1.21 6.48 -52.49 -0.34 0.87 16 38 H 0.13 1.93 5.89 -52.49 -0.31 1.62 16 39 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 40 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 41 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.13 1.63 7.24 -52.49 -0.38 1.25 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -34.51 360.65 -10.01 -44.53 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: -5.85 Total: 21.21 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -5.40 Total: -5.85 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 1.04 Total: -43.99 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.20 Total: -35.78 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.51 -10.01 -44.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096191232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.086 kcal (2) G-P(sol) polarization free energy of solvation -34.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds