Wall clock time and date at job start Tue Mar 31 2020 05:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47378 * 44.41973 * 3 2 1 5 5 C 1.36719 * 119.99960 * 263.54051 * 4 3 2 6 6 H 1.07994 * 119.99970 * 199.58187 * 5 4 3 7 7 C 1.39121 * 119.99758 * 19.57515 * 5 4 3 8 8 N 1.31321 * 120.00157 * 12.66053 * 7 5 4 9 9 Si 1.86802 * 119.99961 * 192.65213 * 7 5 4 10 10 H 1.48507 * 109.46785 * 60.00407 * 9 7 5 11 11 H 1.48500 * 109.47073 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47287 * 300.00775 * 9 7 5 13 13 C 1.34774 * 120.00282 * 83.53530 * 4 3 2 14 14 O 1.21760 * 120.00404 * 180.02562 * 13 4 3 15 15 C 1.46231 * 120.00065 * 0.02562 * 13 4 3 16 16 C 1.34967 * 120.00285 * 186.55300 * 15 13 4 17 17 C 1.47156 * 120.00098 * 14.67354 * 16 15 13 18 18 C 1.39908 * 120.14410 * 223.01131 * 17 16 15 19 19 C 1.37897 * 119.93072 * 179.97438 * 18 17 16 20 20 C 1.38341 * 120.23399 * 359.97438 * 19 18 17 21 21 C 1.38872 * 120.29655 * 0.03930 * 20 19 18 22 22 O 1.35913 * 119.96426 * 179.97438 * 21 20 19 23 23 C 1.42898 * 116.99985 * 354.79012 * 22 21 20 24 24 C 1.54889 * 110.48474 * 92.08481 * 23 22 21 25 25 C 1.54898 * 102.74671 * 156.61943 * 24 23 22 26 26 C 1.54273 * 104.19415 * 322.05636 * 25 24 23 27 27 C 1.53875 * 106.60058 * 23.60892 * 26 25 24 28 28 C 1.38402 * 120.06126 * 0.23297 * 21 20 19 29 29 H 1.09000 * 109.46919 * 284.41590 * 3 2 1 30 30 H 1.09004 * 109.46886 * 164.41700 * 3 2 1 31 31 H 0.96998 * 119.99969 * 179.97438 * 8 7 5 32 32 H 1.07999 * 119.99579 * 6.55841 * 15 13 4 33 33 H 1.08000 * 120.00261 * 194.66885 * 16 15 13 34 34 H 1.07991 * 120.04056 * 359.97438 * 18 17 16 35 35 H 1.07993 * 119.87862 * 179.97438 * 19 18 17 36 36 H 1.08001 * 119.84597 * 180.02562 * 20 19 18 37 37 H 1.08998 * 110.53855 * 329.46706 * 23 22 21 38 38 H 1.08997 * 110.75387 * 274.92835 * 24 23 22 39 39 H 1.08997 * 110.75869 * 38.30703 * 24 23 22 40 40 H 1.08996 * 110.48526 * 203.37824 * 25 24 23 41 41 H 1.08999 * 110.48996 * 80.73185 * 25 24 23 42 42 H 1.09003 * 110.02659 * 264.32903 * 26 25 24 43 43 H 1.09000 * 110.07530 * 142.91957 * 26 25 24 44 44 H 1.08999 * 110.03415 * 240.72093 * 27 26 25 45 45 H 1.08998 * 110.07315 * 119.30819 * 27 26 25 46 46 H 1.08008 * 120.11815 * 179.71609 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9856 -0.9667 5 6 3.4509 -2.2375 -0.5464 6 1 4.0921 -2.8521 -1.1607 7 6 2.9852 -2.7195 0.6728 8 7 2.0189 -2.0907 1.3016 9 14 3.7343 -4.2613 1.4151 10 1 5.1853 -4.0451 1.6455 11 1 3.0671 -4.5632 2.7070 12 1 3.5457 -5.4016 0.4827 13 6 3.1975 -0.6589 -2.2704 14 8 3.6033 -1.4788 -3.0739 15 6 2.8192 0.6802 -2.7199 16 6 2.7932 0.9672 -4.0385 17 6 2.8244 -0.1206 -5.0290 18 6 3.6335 -0.0131 -6.1654 19 6 3.6597 -1.0353 -7.0905 20 6 2.8890 -2.1681 -6.8991 21 6 2.0823 -2.2848 -5.7747 22 8 1.3275 -3.4004 -5.5936 23 6 1.3242 -4.3603 -6.6522 24 6 2.4253 -5.4250 -6.4219 25 6 1.9067 -6.6351 -7.2381 26 6 0.3800 -6.6140 -7.0172 27 6 0.0096 -5.1677 -6.6446 28 6 2.0423 -1.2638 -4.8412 29 1 2.9714 -0.2550 0.9953 30 1 2.9709 0.9908 -0.2761 31 1 1.6940 -2.4270 2.1514 32 1 2.5608 1.4395 -1.9968 33 1 2.7495 1.9952 -4.3666 34 1 4.2368 0.8695 -6.3180 35 1 4.2842 -0.9512 -7.9676 36 1 2.9147 -2.9651 -7.6275 37 1 1.4643 -3.8686 -7.6148 38 1 3.3836 -5.0797 -6.8097 39 1 2.5035 -5.6774 -5.3644 40 1 2.3343 -7.5629 -6.8582 41 1 2.1409 -6.5108 -8.2953 42 1 0.1110 -7.2894 -6.2049 43 1 -0.1345 -6.9074 -7.9322 44 1 -0.4392 -5.1412 -5.6517 45 1 -0.6843 -4.7583 -7.3788 46 1 1.4117 -1.3516 -3.9687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096257510.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:49 Heat of formation + Delta-G solvation = 16.787303 kcal Electronic energy + Delta-G solvation = -29452.072820 eV Core-core repulsion = 25501.314338 eV Total energy + Delta-G solvation = -3950.758481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.02844 -39.01363 -37.84395 -36.19636 -35.64120 -34.40987 -32.93489 -31.87479 -30.00079 -29.15762 -28.68972 -27.66848 -27.47285 -25.28649 -23.27214 -21.97021 -21.39928 -20.60839 -19.94246 -18.57654 -17.94461 -17.55734 -16.47158 -16.30032 -16.05480 -15.59893 -15.28744 -14.89040 -14.62631 -14.32420 -14.05462 -13.71498 -13.45278 -13.31891 -13.16051 -12.99042 -12.92525 -12.57335 -12.28932 -12.00988 -11.92324 -11.73856 -11.55204 -11.33941 -11.30981 -11.19669 -11.18198 -11.09480 -10.86563 -10.62098 -10.55822 -10.47048 -10.40639 -10.36271 -10.21947 -9.33111 -9.28001 -8.67248 -8.07632 -7.63439 -7.52606 -6.53134 -4.00950 1.24120 2.01790 2.39363 3.15098 3.19293 3.21716 3.52288 3.68190 3.96502 4.10540 4.25186 4.33326 4.46852 4.54818 4.79510 4.86294 4.93227 5.05434 5.17165 5.21879 5.28514 5.36317 5.38160 5.45204 5.48835 5.52770 5.57790 5.68577 5.77386 5.78373 5.83599 5.88016 5.95343 6.03836 6.14247 6.15139 6.18550 6.25247 6.48457 6.55974 6.65195 6.70166 6.83692 6.87864 7.10659 7.28948 7.40674 7.92744 7.93228 8.29195 8.75541 9.00577 9.16755 9.79383 10.50414 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009046 B = 0.004087 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3094.491272 B = 6848.832298 C = 8611.058941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.248 3.752 3 C 0.217 3.783 4 N -0.430 5.430 5 C -0.297 4.297 6 H 0.109 0.891 7 C 0.029 3.971 8 N -0.880 5.880 9 Si 0.933 3.067 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.466 3.534 14 O -0.558 6.558 15 C -0.174 4.174 16 C -0.078 4.078 17 C -0.005 4.005 18 C -0.146 4.146 19 C -0.098 4.098 20 C -0.210 4.210 21 C 0.122 3.878 22 O -0.305 6.305 23 C 0.079 3.921 24 C -0.147 4.147 25 C -0.123 4.123 26 C -0.121 4.121 27 C -0.123 4.123 28 C -0.068 4.068 29 H 0.135 0.865 30 H 0.083 0.917 31 H 0.275 0.725 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.814 0.404 -13.258 13.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.070 4.070 3 C 0.090 3.910 4 N -0.149 5.149 5 C -0.425 4.425 6 H 0.127 0.873 7 C -0.174 4.174 8 N -0.519 5.519 9 Si 0.759 3.241 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.257 3.743 14 O -0.442 6.442 15 C -0.195 4.195 16 C -0.099 4.099 17 C -0.005 4.005 18 C -0.164 4.164 19 C -0.117 4.117 20 C -0.229 4.229 21 C 0.077 3.923 22 O -0.219 6.219 23 C 0.023 3.977 24 C -0.184 4.184 25 C -0.160 4.160 26 C -0.159 4.159 27 C -0.161 4.161 28 C -0.087 4.087 29 H 0.153 0.847 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.120 -0.141 -13.251 13.252 hybrid contribution 0.780 -0.829 0.613 1.293 sum 0.900 -0.970 -12.638 12.707 Atomic orbital electron populations 1.80900 1.13628 1.10976 1.10067 1.29324 0.95360 0.90726 0.91573 1.18891 0.81556 0.92052 0.98535 1.43592 1.54830 1.11764 1.04714 1.19738 1.27629 0.91636 1.03464 0.87345 1.25369 0.95171 0.99503 0.97367 1.69728 1.24059 1.40899 1.17255 0.85872 0.79068 0.81053 0.78105 1.19622 1.20868 1.19757 1.18048 0.85681 0.88233 0.82289 1.90769 1.50474 1.51477 1.51439 1.23356 1.01808 0.98007 0.96339 1.22048 0.98550 0.97087 0.92233 1.18527 0.95205 0.93402 0.93370 1.20990 1.01018 0.99612 0.94812 1.20588 0.98703 0.93466 0.98895 1.21111 1.02280 1.00416 0.99105 1.18729 0.92296 0.86712 0.94537 1.86174 1.64898 1.28386 1.42415 1.23273 0.96010 0.88353 0.90099 1.23015 0.98253 0.95141 1.02026 1.22276 0.95448 0.98405 0.99912 1.22078 0.96134 0.96153 1.01498 1.22188 0.96144 0.94536 1.03196 1.20372 1.00544 0.90864 0.96888 0.84739 0.89975 0.91379 0.85957 0.85412 0.86551 0.86691 0.86376 0.90524 0.91063 0.89888 0.91225 0.91577 0.91353 0.91619 0.90126 0.91150 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.36 18.54 42.15 0.78 -10.58 16 2 C 0.25 5.50 13.42 -20.76 -0.28 5.22 16 3 C 0.22 4.30 4.79 -6.83 -0.03 4.27 16 4 N -0.43 -10.01 2.59 -119.59 -0.31 -10.32 16 5 C -0.30 -7.59 9.34 -15.04 -0.14 -7.73 16 6 H 0.11 2.94 7.36 -52.49 -0.39 2.55 16 7 C 0.03 0.72 5.07 -17.44 -0.09 0.63 16 8 N -0.88 -21.86 9.08 55.50 0.50 -21.36 16 9 Si 0.93 19.77 29.57 -169.99 -5.03 14.74 16 10 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 C 0.47 10.58 6.53 -13.05 -0.09 10.50 16 14 O -0.56 -14.28 12.20 5.14 0.06 -14.22 16 15 C -0.17 -3.13 8.91 -37.53 -0.33 -3.46 16 16 C -0.08 -1.28 9.80 -37.12 -0.36 -1.64 16 17 C 0.00 -0.09 4.45 -105.08 -0.47 -0.55 16 18 C -0.15 -2.31 9.79 -39.08 -0.38 -2.69 16 19 C -0.10 -1.47 10.02 -39.67 -0.40 -1.87 16 20 C -0.21 -3.38 8.95 -39.31 -0.35 -3.74 16 21 C 0.12 2.32 6.67 -39.29 -0.26 2.05 16 22 O -0.30 -5.69 9.84 -19.47 -0.19 -5.88 16 23 C 0.08 1.11 2.68 -25.07 -0.07 1.04 16 24 C -0.15 -1.92 6.52 -24.73 -0.16 -2.08 16 25 C -0.12 -1.23 6.83 -25.06 -0.17 -1.40 16 26 C -0.12 -1.19 6.80 -25.61 -0.17 -1.37 16 27 C -0.12 -1.47 6.56 -25.61 -0.17 -1.64 16 28 C -0.07 -1.39 6.71 -38.94 -0.26 -1.65 16 29 H 0.14 2.74 6.26 -51.93 -0.32 2.41 16 30 H 0.08 1.25 6.39 -51.93 -0.33 0.91 16 31 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.12 1.83 6.24 -52.49 -0.33 1.50 16 33 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.12 1.60 5.66 -52.49 -0.30 1.31 16 37 H 0.08 0.96 6.07 -51.93 -0.32 0.64 16 38 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.12 2.79 7.19 -52.48 -0.38 2.41 16 LS Contribution 379.46 15.07 5.72 5.72 Total: -1.00 -31.25 379.46 -8.78 -40.03 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.13 Total: 7.99 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -4.19 Total: -6.12 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.98 Total: -42.26 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.13 Total: -20.10 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.74 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.25 -8.78 -40.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096257510.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.821 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds