Wall clock time and date at job start Tue Mar 31 2020 05:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47378 * 44.41973 * 3 2 1 5 5 C 1.36719 * 119.99960 * 263.54051 * 4 3 2 6 6 H 1.07994 * 119.99970 * 199.58187 * 5 4 3 7 7 C 1.39121 * 119.99758 * 19.57515 * 5 4 3 8 8 N 1.31321 * 120.00157 * 12.66053 * 7 5 4 9 9 Si 1.86802 * 119.99961 * 192.65213 * 7 5 4 10 10 H 1.48507 * 109.46785 * 60.00407 * 9 7 5 11 11 H 1.48500 * 109.47073 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47287 * 300.00775 * 9 7 5 13 13 C 1.34774 * 120.00282 * 83.53530 * 4 3 2 14 14 O 1.21760 * 120.00404 * 180.02562 * 13 4 3 15 15 C 1.46231 * 120.00065 * 0.02562 * 13 4 3 16 16 C 1.34967 * 120.00285 * 186.55300 * 15 13 4 17 17 C 1.47156 * 120.00098 * 14.67354 * 16 15 13 18 18 C 1.39908 * 120.14410 * 223.01131 * 17 16 15 19 19 C 1.37897 * 119.93072 * 179.97438 * 18 17 16 20 20 C 1.38341 * 120.23399 * 359.97438 * 19 18 17 21 21 C 1.38872 * 120.29655 * 0.03930 * 20 19 18 22 22 O 1.35913 * 119.96426 * 179.97438 * 21 20 19 23 23 C 1.42898 * 116.99985 * 354.79012 * 22 21 20 24 24 C 1.54889 * 110.48474 * 92.08481 * 23 22 21 25 25 C 1.54898 * 102.74671 * 156.61943 * 24 23 22 26 26 C 1.54273 * 104.19415 * 322.05636 * 25 24 23 27 27 C 1.53875 * 106.60058 * 23.60892 * 26 25 24 28 28 C 1.38402 * 120.06126 * 0.23297 * 21 20 19 29 29 H 1.09000 * 109.46919 * 284.41590 * 3 2 1 30 30 H 1.09004 * 109.46886 * 164.41700 * 3 2 1 31 31 H 0.96998 * 119.99969 * 179.97438 * 8 7 5 32 32 H 1.07999 * 119.99579 * 6.55841 * 15 13 4 33 33 H 1.08000 * 120.00261 * 194.66885 * 16 15 13 34 34 H 1.07991 * 120.04056 * 359.97438 * 18 17 16 35 35 H 1.07993 * 119.87862 * 179.97438 * 19 18 17 36 36 H 1.08001 * 119.84597 * 180.02562 * 20 19 18 37 37 H 1.08998 * 110.53855 * 329.46706 * 23 22 21 38 38 H 1.08997 * 110.75387 * 274.92835 * 24 23 22 39 39 H 1.08997 * 110.75869 * 38.30703 * 24 23 22 40 40 H 1.08996 * 110.48526 * 203.37824 * 25 24 23 41 41 H 1.08999 * 110.48996 * 80.73185 * 25 24 23 42 42 H 1.09003 * 110.02659 * 264.32903 * 26 25 24 43 43 H 1.09000 * 110.07530 * 142.91957 * 26 25 24 44 44 H 1.08999 * 110.03415 * 240.72093 * 27 26 25 45 45 H 1.08998 * 110.07315 * 119.30819 * 27 26 25 46 46 H 1.08008 * 120.11815 * 179.71609 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9856 -0.9667 5 6 3.4509 -2.2375 -0.5464 6 1 4.0921 -2.8521 -1.1607 7 6 2.9852 -2.7195 0.6728 8 7 2.0189 -2.0907 1.3016 9 14 3.7343 -4.2613 1.4151 10 1 5.1853 -4.0451 1.6455 11 1 3.0671 -4.5632 2.7070 12 1 3.5457 -5.4016 0.4827 13 6 3.1975 -0.6589 -2.2704 14 8 3.6033 -1.4788 -3.0739 15 6 2.8192 0.6802 -2.7199 16 6 2.7932 0.9672 -4.0385 17 6 2.8244 -0.1206 -5.0290 18 6 3.6335 -0.0131 -6.1654 19 6 3.6597 -1.0353 -7.0905 20 6 2.8890 -2.1681 -6.8991 21 6 2.0823 -2.2848 -5.7747 22 8 1.3275 -3.4004 -5.5936 23 6 1.3242 -4.3603 -6.6522 24 6 2.4253 -5.4250 -6.4219 25 6 1.9067 -6.6351 -7.2381 26 6 0.3800 -6.6140 -7.0172 27 6 0.0096 -5.1677 -6.6446 28 6 2.0423 -1.2638 -4.8412 29 1 2.9714 -0.2550 0.9953 30 1 2.9709 0.9908 -0.2761 31 1 1.6940 -2.4270 2.1514 32 1 2.5608 1.4395 -1.9968 33 1 2.7495 1.9952 -4.3666 34 1 4.2368 0.8695 -6.3180 35 1 4.2842 -0.9512 -7.9676 36 1 2.9147 -2.9651 -7.6275 37 1 1.4643 -3.8686 -7.6148 38 1 3.3836 -5.0797 -6.8097 39 1 2.5035 -5.6774 -5.3644 40 1 2.3343 -7.5629 -6.8582 41 1 2.1409 -6.5108 -8.2953 42 1 0.1110 -7.2894 -6.2049 43 1 -0.1345 -6.9074 -7.9322 44 1 -0.4392 -5.1412 -5.6517 45 1 -0.6843 -4.7583 -7.3788 46 1 1.4117 -1.3516 -3.9687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096257510.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:48 Heat of formation + Delta-G solvation = 0.270071 kcal Electronic energy + Delta-G solvation = -29452.789061 eV Core-core repulsion = 25501.314338 eV Total energy + Delta-G solvation = -3951.474722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.33699 -40.61749 -39.10696 -37.64266 -37.11769 -36.19597 -34.38719 -33.70160 -31.28986 -30.46823 -29.72600 -29.17288 -28.71269 -27.01424 -24.73397 -23.26904 -22.79287 -21.58224 -21.10374 -20.01791 -19.69072 -19.07454 -18.00420 -17.93801 -17.27417 -16.80114 -16.68937 -16.21822 -16.04208 -15.91397 -15.41710 -15.10928 -14.84217 -14.72405 -14.68668 -14.39833 -14.35878 -13.87576 -13.73657 -13.49647 -13.35817 -13.25960 -13.06465 -12.95028 -12.88977 -12.41097 -12.36077 -12.21347 -12.20700 -12.14448 -12.11024 -11.98072 -11.57683 -11.52130 -11.32207 -11.12992 -10.66695 -10.37520 -9.90238 -9.02605 -8.95425 -8.39663 -5.96035 -0.12647 0.68723 1.02819 1.42006 1.43428 1.51214 1.93653 2.22002 2.32648 2.33451 2.55905 2.98951 3.09442 3.22874 3.49990 3.57987 3.64460 3.82797 3.89333 3.99951 4.08684 4.13417 4.24181 4.37664 4.43079 4.45094 4.47591 4.51971 4.59705 4.67239 4.71235 4.74914 4.80987 4.96935 4.98403 5.08046 5.12924 5.15677 5.17879 5.27403 5.33897 5.37019 5.43719 5.51238 5.60070 5.76313 6.00551 6.11233 6.45405 6.64424 7.00223 7.14353 7.37403 8.01256 8.61172 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009046 B = 0.004087 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3094.491272 B = 6848.832298 C = 8611.058941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.261 3.739 3 C 0.220 3.780 4 N -0.449 5.449 5 C -0.325 4.325 6 H 0.078 0.922 7 C 0.001 3.999 8 N -0.896 5.896 9 Si 0.986 3.014 10 H -0.258 1.258 11 H -0.275 1.275 12 H -0.288 1.288 13 C 0.464 3.536 14 O -0.595 6.595 15 C -0.201 4.201 16 C -0.048 4.048 17 C -0.028 4.028 18 C -0.144 4.144 19 C -0.092 4.092 20 C -0.209 4.209 21 C 0.100 3.900 22 O -0.340 6.340 23 C 0.069 3.931 24 C -0.150 4.150 25 C -0.114 4.114 26 C -0.117 4.117 27 C -0.124 4.124 28 C -0.103 4.103 29 H 0.130 0.870 30 H 0.137 0.863 31 H 0.275 0.725 32 H 0.157 0.843 33 H 0.182 0.818 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.144 0.856 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.053 0.947 45 H 0.088 0.912 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.118 1.700 -15.996 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.195 5.195 2 C -0.056 4.056 3 C 0.093 3.907 4 N -0.168 5.168 5 C -0.453 4.453 6 H 0.096 0.904 7 C -0.200 4.200 8 N -0.536 5.536 9 Si 0.811 3.189 10 H -0.183 1.183 11 H -0.200 1.200 12 H -0.214 1.214 13 C 0.257 3.743 14 O -0.481 6.481 15 C -0.222 4.222 16 C -0.068 4.068 17 C -0.028 4.028 18 C -0.162 4.162 19 C -0.110 4.110 20 C -0.228 4.228 21 C 0.055 3.945 22 O -0.255 6.255 23 C 0.013 3.987 24 C -0.187 4.187 25 C -0.151 4.151 26 C -0.154 4.154 27 C -0.162 4.162 28 C -0.122 4.122 29 H 0.148 0.852 30 H 0.154 0.846 31 H 0.085 0.915 32 H 0.174 0.826 33 H 0.199 0.801 34 H 0.172 0.828 35 H 0.176 0.824 36 H 0.161 0.839 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.112 0.888 44 H 0.072 0.928 45 H 0.107 0.893 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.423 1.176 -15.985 16.091 hybrid contribution 0.379 -1.230 1.225 1.777 sum 1.802 -0.055 -14.760 14.869 Atomic orbital electron populations 1.80890 1.14844 1.12343 1.11388 1.29851 0.95867 0.89523 0.90367 1.19183 0.79944 0.93770 0.97790 1.43703 1.55763 1.11718 1.05658 1.19537 1.28631 0.93169 1.03981 0.90362 1.25915 0.95265 1.01602 0.97212 1.69814 1.24596 1.41834 1.17328 0.85091 0.79147 0.77610 0.77101 1.18289 1.20007 1.21437 1.18929 0.83877 0.89714 0.81795 1.90738 1.51650 1.53253 1.52454 1.23347 1.04704 0.96120 0.98000 1.22677 0.94037 0.98963 0.91151 1.18907 0.95593 0.93256 0.95066 1.21441 1.00111 1.01096 0.93523 1.21149 0.97793 0.92233 0.99796 1.21435 1.01317 1.01732 0.98296 1.19007 0.93326 0.86583 0.95575 1.86140 1.65323 1.29204 1.44882 1.23650 0.97350 0.87895 0.89763 1.23006 0.98471 0.96680 1.00584 1.22280 0.95178 0.96996 1.00651 1.22094 0.96352 0.94312 1.02657 1.22257 0.95535 0.96051 1.02344 1.20257 1.02207 0.93318 0.96437 0.85242 0.84581 0.91524 0.82552 0.80139 0.82840 0.82427 0.83875 0.88588 0.90807 0.93350 0.90443 0.89125 0.91714 0.88839 0.92776 0.89331 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -25.06 18.54 20.01 0.37 -24.69 16 2 C 0.26 11.71 13.42 89.44 1.20 12.91 16 3 C 0.22 8.68 4.79 84.58 0.41 9.08 16 4 N -0.45 -21.59 2.59 -650.47 -1.69 -23.28 16 5 C -0.33 -17.50 9.34 84.14 0.79 -16.71 16 6 H 0.08 4.57 7.36 -2.91 -0.02 4.55 16 7 C 0.00 0.07 5.07 84.98 0.43 0.50 16 8 N -0.90 -45.72 9.08 21.69 0.20 -45.52 16 9 Si 0.99 41.91 29.57 68.60 2.03 43.94 16 10 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 11 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 12 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 13 C 0.46 21.69 6.53 86.32 0.56 22.25 16 14 O -0.60 -32.06 12.20 -4.54 -0.06 -32.12 16 15 C -0.20 -6.99 8.91 23.60 0.21 -6.78 16 16 C -0.05 -1.46 9.80 23.86 0.23 -1.22 16 17 C -0.03 -0.99 4.45 -20.16 -0.09 -1.08 16 18 C -0.14 -4.09 9.79 22.59 0.22 -3.87 16 19 C -0.09 -2.45 10.02 22.21 0.22 -2.22 16 20 C -0.21 -6.46 8.95 22.45 0.20 -6.26 16 21 C 0.10 3.94 6.67 22.46 0.15 4.09 16 22 O -0.34 -13.64 9.84 -92.57 -0.91 -14.55 16 23 C 0.07 1.96 2.68 31.67 0.09 2.05 16 24 C -0.15 -3.99 6.52 31.89 0.21 -3.79 16 25 C -0.11 -2.09 6.83 31.67 0.22 -1.87 16 26 C -0.12 -2.14 6.80 31.32 0.21 -1.93 16 27 C -0.12 -3.00 6.56 31.32 0.21 -2.79 16 28 C -0.10 -4.45 6.71 22.68 0.15 -4.30 16 29 H 0.13 5.30 6.26 -2.39 -0.01 5.29 16 30 H 0.14 3.83 6.39 -2.38 -0.02 3.81 16 31 H 0.27 13.57 8.31 -92.71 -0.77 12.80 16 32 H 0.16 4.24 6.24 -2.91 -0.02 4.23 16 33 H 0.18 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.15 3.19 8.06 -2.92 -0.02 3.17 16 35 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 36 H 0.14 3.56 5.66 -2.91 -0.02 3.54 16 37 H 0.10 2.29 6.07 -2.39 -0.01 2.27 16 38 H 0.07 1.87 7.88 -2.39 -0.02 1.85 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.05 1.57 8.07 -2.39 -0.02 1.55 16 45 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.07 3.77 7.19 -2.91 -0.02 3.75 16 Total: -1.00 -75.71 379.46 6.56 -69.15 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 1.00 Total: 29.02 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 5.62 Total: -1.95 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -1.12 Total: -93.50 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -0.97 Total: -46.67 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -75.71 6.56 -69.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096257510.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.421 kcal (2) G-P(sol) polarization free energy of solvation -75.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds