Wall clock time and date at job start Tue Mar 31 2020 05:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35815 * 116.99939 * 2 1 4 4 C 1.38893 * 119.89784 * 0.02562 * 3 2 1 5 5 C 1.37722 * 120.17690 * 179.97438 * 4 3 2 6 6 C 1.40018 * 119.97282 * 359.97438 * 5 4 3 7 7 C 1.46888 * 120.10117 * 179.97438 * 6 5 4 8 8 C 1.35223 * 119.99968 * 311.18718 * 7 6 5 9 9 C 1.41815 * 120.00239 * 348.84976 * 8 7 6 10 10 O 1.21796 * 119.99887 * 353.30554 * 9 8 7 11 11 C 1.47678 * 120.00149 * 173.29965 * 9 8 7 12 12 C 1.39804 * 120.07636 * 359.72157 * 11 9 8 13 13 C 1.37644 * 119.91977 * 179.78830 * 12 11 9 14 14 C 1.39154 * 120.07857 * 0.49177 * 13 12 11 15 15 O 1.35560 * 119.92375 * 179.72142 * 14 13 12 16 16 C 1.34782 * 116.99896 * 174.64695 * 15 14 13 17 17 H 1.07994 * 120.00131 * 5.07293 * 16 15 14 18 18 C 1.38742 * 119.99694 * 185.07529 * 16 15 14 19 19 N 1.31489 * 120.00320 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99916 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47398 * 89.99828 * 20 18 16 22 22 H 1.48506 * 109.47152 * 210.00102 * 20 18 16 23 23 H 1.48503 * 109.47211 * 329.99773 * 20 18 16 24 24 C 1.39165 * 120.15394 * 359.74308 * 14 13 12 25 25 C 1.37644 * 120.07402 * 0.02562 * 24 14 13 26 26 C 1.40031 * 119.79964 * 359.97438 * 6 5 4 27 27 C 1.38064 * 119.82215 * 0.02562 * 26 6 5 28 28 O 1.35995 * 119.98672 * 179.97438 * 27 26 6 29 29 H 1.09000 * 109.46756 * 299.99517 * 1 2 3 30 30 H 1.08999 * 109.47425 * 59.99989 * 1 2 3 31 31 H 1.09007 * 109.46787 * 180.02562 * 1 2 3 32 32 H 1.08003 * 119.91000 * 0.27426 * 4 3 2 33 33 H 1.08000 * 120.01113 * 179.97438 * 5 4 3 34 34 H 1.08002 * 119.99797 * 131.18109 * 7 6 5 35 35 H 1.08008 * 120.00036 * 168.84994 * 8 7 6 36 36 H 1.07997 * 120.03826 * 0.03480 * 12 11 9 37 37 H 1.08001 * 119.95943 * 180.23611 * 13 12 11 38 38 H 0.97000 * 120.00319 * 180.02562 * 19 18 16 39 39 H 1.07997 * 119.96421 * 179.97438 * 24 14 13 40 40 H 1.07997 * 120.03488 * 179.97438 * 25 24 14 41 41 H 1.07999 * 120.08665 * 180.02562 * 26 6 5 42 42 H 0.96701 * 113.99772 * 90.00305 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 1.2870 2.3736 0.0005 5 6 1.9063 3.6038 0.0011 6 6 3.3042 3.6832 0.0016 7 6 3.9676 4.9937 0.0016 8 6 3.5852 5.9451 -0.8800 9 6 2.7192 5.6113 -1.9523 10 8 2.4173 4.4483 -2.1518 11 6 2.1833 6.6738 -2.8268 12 6 2.5241 8.0098 -2.5957 13 6 2.0263 8.9970 -3.4155 14 6 1.1766 8.6677 -4.4671 15 8 0.6836 9.6431 -5.2691 16 6 -0.0426 9.2504 -6.3345 17 1 -0.2779 8.2055 -6.4721 18 6 -0.4878 10.1888 -7.2544 19 7 -0.2018 11.4612 -7.0866 20 14 -1.4950 9.6448 -8.7306 21 1 -2.9381 9.6685 -8.3812 22 1 -1.2456 10.5675 -9.8672 23 1 -1.1018 8.2659 -9.1170 24 6 0.8314 7.3393 -4.6971 25 6 1.3293 6.3465 -3.8842 26 6 4.0679 2.5095 0.0022 27 6 3.4384 1.2807 0.0016 28 8 4.1769 0.1387 0.0016 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2087 2.3135 0.0054 33 1 1.3138 4.5068 0.0011 34 1 4.7606 5.1975 0.7059 35 1 3.9394 6.9592 -0.7676 36 1 3.1803 8.2665 -1.7773 37 1 2.2922 10.0290 -3.2398 38 1 -0.5133 12.1173 -7.7295 39 1 0.1714 7.0872 -5.5139 40 1 1.0607 5.3158 -4.0630 41 1 5.1465 2.5654 0.0030 42 1 4.3900 -0.1918 0.8850 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096298663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:25 Heat of formation + Delta-G solvation = -58.567533 kcal Electronic energy + Delta-G solvation = -27528.742893 eV Core-core repulsion = 23406.590935 eV Total energy + Delta-G solvation = -4122.151958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.59752 -39.69533 -38.80657 -37.88587 -36.77035 -36.07417 -33.36870 -32.53800 -30.59721 -30.24632 -29.96517 -28.88523 -27.26412 -25.70135 -24.48398 -22.74609 -22.32584 -21.95851 -20.81273 -19.17045 -18.48001 -18.02589 -17.69769 -17.21483 -16.67112 -16.17583 -15.98054 -15.41053 -14.88666 -14.69765 -14.56680 -14.41857 -14.17139 -14.04290 -13.99750 -13.70960 -13.39396 -13.25313 -12.83791 -12.73536 -12.40477 -12.29584 -12.01248 -11.85476 -11.65130 -11.45889 -11.37502 -11.23218 -10.92570 -10.76915 -10.67461 -10.55277 -9.58522 -9.53307 -9.28581 -9.03345 -8.88880 -8.37209 -7.76589 -7.41311 -6.67347 -4.22797 0.52612 1.20863 1.43829 2.02359 2.15854 3.01831 3.04042 3.06287 3.09127 3.49808 3.61622 3.81117 4.03940 4.53174 4.58862 4.63315 4.71120 4.84497 4.91691 4.93739 5.03997 5.07205 5.17606 5.25638 5.27688 5.48083 5.57694 5.61875 5.64073 5.74594 5.94106 6.03798 6.06688 6.14662 6.26441 6.31757 6.48135 6.52933 6.55617 6.74885 6.90483 6.99709 7.05606 7.22834 7.24759 7.62445 7.62904 7.78511 8.11845 8.77556 9.43696 10.49119 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.017609 B = 0.002182 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.714339 B =12828.883343 C =13952.838458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.109 3.891 4 C -0.198 4.198 5 C -0.020 4.020 6 C -0.081 4.081 7 C -0.030 4.030 8 C -0.217 4.217 9 C 0.418 3.582 10 O -0.472 6.472 11 C -0.270 4.270 12 C -0.030 4.030 13 C -0.205 4.205 14 C 0.174 3.826 15 O -0.160 6.160 16 C -0.394 4.394 17 H 0.098 0.902 18 C 0.042 3.958 19 N -0.851 5.851 20 Si 0.945 3.055 21 H -0.271 1.271 22 H -0.275 1.275 23 H -0.265 1.265 24 C -0.250 4.250 25 C -0.009 4.009 26 C -0.090 4.090 27 C 0.062 3.938 28 O -0.486 6.486 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.275 0.725 39 H 0.131 0.869 40 H 0.117 0.883 41 H 0.134 0.866 42 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.752 -15.535 16.591 23.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.063 3.937 4 C -0.217 4.217 5 C -0.039 4.039 6 C -0.081 4.081 7 C -0.049 4.049 8 C -0.236 4.236 9 C 0.304 3.696 10 O -0.355 6.355 11 C -0.272 4.272 12 C -0.049 4.049 13 C -0.225 4.225 14 C 0.117 3.883 15 O -0.061 6.061 16 C -0.469 4.469 17 H 0.115 0.885 18 C -0.164 4.164 19 N -0.483 5.483 20 Si 0.769 3.231 21 H -0.196 1.196 22 H -0.200 1.200 23 H -0.189 1.189 24 C -0.269 4.269 25 C -0.028 4.028 26 C -0.108 4.108 27 C 0.017 3.983 28 O -0.295 6.295 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.085 0.915 39 H 0.149 0.851 40 H 0.135 0.865 41 H 0.152 0.848 42 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 4.593 -15.748 15.722 22.722 hybrid contribution -0.720 0.112 -0.400 0.831 sum 3.873 -15.636 15.322 22.232 Atomic orbital electron populations 1.23088 0.78520 1.03856 1.01541 1.86073 1.21216 1.26576 1.88472 1.19570 0.91679 0.84688 0.97802 1.20976 0.99927 0.91742 1.09042 1.20936 0.93174 0.96965 0.92792 1.18667 0.93084 0.92522 1.03834 1.22448 0.95198 0.91134 0.96118 1.22827 1.02857 1.00383 0.97519 1.19148 0.78486 0.88306 0.83633 1.90687 1.53743 1.21228 1.69809 1.19819 1.09945 0.93910 1.03488 1.20848 0.96080 0.91441 0.96485 1.20161 1.04001 0.99732 0.98579 1.19641 0.90114 0.88193 0.90321 1.83897 1.57703 1.30963 1.33503 1.21500 1.30501 0.95326 0.99577 0.88476 1.25405 0.97536 0.94750 0.98711 1.70002 1.41677 1.00826 1.35829 0.85645 0.79348 0.78955 0.79188 1.19603 1.20001 1.18896 1.21124 1.08440 0.92503 1.04822 1.20904 0.92006 0.98455 0.91414 1.21206 0.99925 0.90113 0.99579 1.17452 0.86024 0.86287 1.08574 1.84936 1.72158 1.39512 1.32867 0.92694 0.92397 0.88285 0.85166 0.85983 0.84918 0.84630 0.86267 0.86004 0.91546 0.85130 0.86483 0.84812 0.76537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.74 10.26 -33.83 -0.35 -4.09 16 3 C 0.11 1.40 6.71 -38.88 -0.26 1.14 16 4 C -0.20 -2.45 9.01 -39.53 -0.36 -2.80 16 5 C -0.02 -0.26 6.82 -39.10 -0.27 -0.53 16 6 C -0.08 -1.00 4.27 -105.06 -0.45 -1.45 16 7 C -0.03 -0.32 9.77 -37.16 -0.36 -0.68 16 8 C -0.22 -2.63 9.24 -39.29 -0.36 -2.99 16 9 C 0.42 6.67 6.16 -34.36 -0.21 6.46 16 10 O -0.47 -8.49 12.35 5.10 0.06 -8.43 16 11 C -0.27 -4.78 5.88 -104.87 -0.62 -5.40 16 12 C -0.03 -0.50 9.42 -39.21 -0.37 -0.87 16 13 C -0.21 -4.06 9.97 -39.46 -0.39 -4.46 16 14 C 0.17 4.03 6.66 -38.90 -0.26 3.77 16 15 O -0.16 -4.34 9.74 0.77 0.01 -4.34 16 16 C -0.39 -10.50 9.48 30.92 0.29 -10.21 16 17 H 0.10 2.40 5.18 -52.49 -0.27 2.13 16 18 C 0.04 1.11 5.49 -17.51 -0.10 1.02 16 19 N -0.85 -23.74 13.67 55.48 0.76 -22.98 16 20 Si 0.94 19.60 29.55 -169.99 -5.02 14.58 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 24 C -0.25 -5.34 9.15 -39.45 -0.36 -5.70 16 25 C -0.01 -0.18 9.58 -39.22 -0.38 -0.55 16 26 C -0.09 -1.07 9.72 -38.97 -0.38 -1.44 16 27 C 0.06 0.79 6.71 -39.19 -0.26 0.52 16 28 O -0.49 -5.62 13.28 -34.40 -0.46 -6.07 16 29 H 0.05 0.36 7.65 -51.93 -0.40 -0.03 16 30 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.13 1.34 6.27 -52.48 -0.33 1.01 16 33 H 0.12 1.56 7.51 -52.49 -0.39 1.16 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.14 1.32 6.26 -52.48 -0.33 0.99 16 36 H 0.12 1.52 6.21 -52.49 -0.33 1.19 16 37 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 38 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.13 2.78 5.62 -52.49 -0.29 2.48 16 40 H 0.12 2.15 7.64 -52.49 -0.40 1.75 16 41 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.38 2.43 9.06 45.56 0.41 2.84 16 LS Contribution 363.73 15.07 5.48 5.48 Total: -1.00 -33.20 363.73 -7.17 -40.37 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -3.55 Total: 8.47 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -4.10 Total: -22.99 kcal Atomic # 7 Polarization: -23.74 SS G_CDS: 0.76 Total: -22.98 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.73 Total: -22.93 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.20 -7.17 -40.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096298663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.199 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds