Wall clock time and date at job start Tue Mar 31 2020 05:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31387 * 1 3 3 Si 1.86798 * 120.00027 * 2 1 4 4 H 1.48501 * 109.46969 * 275.00091 * 3 2 1 5 5 H 1.48500 * 109.46954 * 34.99763 * 3 2 1 6 6 H 1.48498 * 109.47130 * 154.99931 * 3 2 1 7 7 C 1.39040 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00292 * 212.98861 * 7 2 1 9 9 N 1.36783 * 119.99899 * 32.98376 * 7 2 1 10 10 C 1.34774 * 119.99983 * 186.50568 * 9 7 2 11 11 O 1.21850 * 120.00129 * 353.96644 * 10 9 7 12 12 C 1.41210 * 119.99581 * 173.96042 * 10 9 7 13 13 C 1.35878 * 119.99975 * 199.17241 * 12 10 9 14 14 C 1.41412 * 119.99646 * 28.67628 * 13 12 10 15 15 C 1.37159 * 125.46920 * 189.49974 * 14 13 12 16 16 C 1.37349 * 113.22477 * 179.74685 * 15 14 13 17 17 C 1.34044 * 115.11393 * 0.22463 * 16 15 14 18 18 Br 1.89095 * 124.49871 * 180.02562 * 17 16 15 19 19 S 1.70604 * 111.00754 * 0.02562 * 17 16 15 20 20 C 1.46506 * 119.99860 * 6.51099 * 9 7 2 21 21 C 1.53000 * 117.49957 * 129.23543 * 20 9 7 22 22 C 1.52994 * 117.50241 * 60.57170 * 20 9 7 23 23 H 0.97006 * 119.99703 * 359.97438 * 1 2 3 24 24 H 1.07996 * 120.00600 * 19.18529 * 12 10 9 25 25 H 1.07998 * 120.00467 * 208.67434 * 13 12 10 26 26 H 1.07998 * 123.38798 * 0.02562 * 15 14 13 27 27 H 1.08005 * 122.44785 * 180.25512 * 16 15 14 28 28 H 1.08998 * 115.54525 * 274.89921 * 20 9 7 29 29 H 1.08996 * 117.49609 * 359.97438 * 21 20 9 30 30 H 1.08999 * 117.50033 * 145.01647 * 21 20 9 31 31 H 1.08994 * 117.50147 * 214.98308 * 22 20 9 32 32 H 1.09000 * 117.49537 * 359.97438 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.3897 2.1074 -1.3948 5 1 1.5021 2.6198 0.8030 6 1 3.5942 1.4120 0.5917 7 6 2.0091 -1.2041 -0.0005 8 1 2.9584 -1.2798 0.5086 9 7 1.4905 -2.2929 -0.6459 10 6 2.0960 -3.4921 -0.5376 11 8 3.1633 -3.5855 0.0428 12 6 1.4934 -4.6403 -1.0966 13 6 1.8676 -5.8770 -0.6760 14 6 2.3472 -6.0605 0.6416 15 6 2.9237 -7.2068 1.1263 16 6 3.3040 -7.1072 2.4423 17 6 3.0463 -5.9259 3.0211 18 35 3.4581 -5.5007 4.8170 19 16 2.2976 -4.8569 1.9224 20 6 0.2769 -2.1555 -1.4550 21 6 0.3137 -2.7045 -2.8827 22 6 0.3250 -1.1927 -2.6430 23 1 -0.4850 0.8401 0.0004 24 1 0.7354 -4.5357 -1.8586 25 1 1.7987 -6.7198 -1.3478 26 1 3.0683 -8.0966 0.5316 27 1 3.7766 -7.9210 2.9722 28 1 -0.6633 -2.2350 -0.9093 29 1 1.2410 -3.1675 -3.2200 30 1 -0.6024 -3.1447 -3.2764 31 1 -0.5836 -0.6389 -2.8791 32 1 1.2595 -0.6611 -2.8223 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096313822.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:07 Heat of formation + Delta-G solvation = 75.269603 kcal Electronic energy + Delta-G solvation = -19280.298016 eV Core-core repulsion = 16188.583002 eV Total energy + Delta-G solvation = -3091.715014 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 340.983 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.33580 -37.33469 -36.39064 -33.81430 -32.79102 -31.54486 -30.83202 -27.67473 -25.58304 -23.70164 -22.37203 -21.75069 -21.20537 -19.13217 -18.40475 -17.33402 -16.36275 -15.73546 -15.35412 -15.07947 -14.43016 -14.10903 -13.64790 -13.36867 -13.01816 -12.71223 -12.50476 -12.27383 -11.92100 -11.52598 -11.49200 -11.32198 -10.98595 -10.68455 -10.63770 -10.53519 -10.27736 -10.07600 -9.68571 -9.66179 -9.18139 -9.02750 -8.55415 -8.22033 -7.52588 -6.98779 -6.85790 -3.91254 0.63273 1.80967 2.38393 2.55971 2.79707 2.96805 3.07278 3.12631 3.41694 3.83253 4.14171 4.39780 4.52514 4.88427 5.46236 5.56018 5.60557 5.69680 5.84915 5.92215 5.98591 6.04369 6.27730 6.40907 6.42013 6.64224 6.65419 6.73836 6.88479 7.04477 7.11328 7.16360 7.81000 8.10908 8.83881 9.05897 9.79633 10.11235 Molecular weight = 340.98amu Principal moments of inertia in cm(-1) A = 0.015058 B = 0.004492 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.025103 B = 6232.105218 C = 7708.903880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.048 3.952 3 Si 0.911 3.089 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.292 4.292 8 H 0.120 0.880 9 N -0.376 5.376 10 C 0.418 3.582 11 O -0.582 6.582 12 C -0.190 4.190 13 C -0.069 4.069 14 C -0.162 4.162 15 C -0.157 4.157 16 C -0.113 4.113 17 C -0.308 4.308 18 Br -0.029 7.029 19 S 0.381 5.619 20 C 0.109 3.891 21 C -0.210 4.210 22 C -0.157 4.157 23 H 0.279 0.721 24 H 0.129 0.871 25 H 0.127 0.873 26 H 0.134 0.866 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.975 -7.352 1.137 7.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.164 4.164 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.421 4.421 8 H 0.138 0.862 9 N -0.086 5.086 10 C 0.215 3.785 11 O -0.474 6.474 12 C -0.216 4.216 13 C -0.094 4.094 14 C -0.284 4.284 15 C -0.188 4.188 16 C -0.148 4.148 17 C -0.507 4.507 18 Br 0.054 6.946 19 S 0.654 5.346 20 C 0.004 3.996 21 C -0.248 4.248 22 C -0.195 4.195 23 H 0.089 0.911 24 H 0.146 0.854 25 H 0.144 0.856 26 H 0.152 0.848 27 H 0.143 0.857 28 H 0.136 0.864 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.065 -5.501 2.265 6.043 hybrid contribution 0.777 -0.750 -0.640 1.255 sum -0.288 -6.251 1.625 6.465 Atomic orbital electron populations 1.70099 1.06843 1.29275 1.37754 1.25380 0.94986 1.00365 0.95715 0.86135 0.80814 0.80609 0.78924 1.19740 1.20516 1.18535 1.20030 1.05518 0.86879 1.29673 0.86229 1.43735 1.19705 1.08376 1.36816 1.16573 0.88896 0.83140 0.89921 1.90684 1.22525 1.84839 1.49372 1.22442 1.01064 0.93386 1.04706 1.20086 1.00079 0.97082 0.92125 1.22765 1.08078 0.98288 0.99231 1.20388 1.04407 0.98888 0.95160 1.19553 1.03804 0.96265 0.95136 1.26238 1.22155 1.04531 0.97811 1.96505 1.93966 1.94046 1.10083 1.84244 1.49744 1.07796 0.92849 1.21366 0.90294 1.02737 0.85191 1.23559 1.02872 0.97937 1.00453 1.22969 1.02648 0.91525 1.02341 0.91071 0.85359 0.85579 0.84785 0.85693 0.86362 0.88760 0.88654 0.89158 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -18.45 11.06 55.50 0.61 -17.83 16 2 C 0.05 1.10 4.38 -17.44 -0.08 1.03 16 3 Si 0.91 18.30 29.66 -169.99 -5.04 13.25 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.29 -7.28 9.28 -15.05 -0.14 -7.42 16 8 H 0.12 3.20 7.35 -52.49 -0.39 2.82 16 9 N -0.38 -8.70 2.93 -111.07 -0.33 -9.03 16 10 C 0.42 9.65 5.74 -15.13 -0.09 9.57 16 11 O -0.58 -15.07 12.39 5.05 0.06 -15.01 16 12 C -0.19 -3.67 8.39 -39.30 -0.33 -3.99 16 13 C -0.07 -1.24 9.73 -39.22 -0.38 -1.62 16 14 C -0.16 -3.13 5.52 -38.77 -0.21 -3.35 16 15 C -0.16 -2.70 10.25 -40.30 -0.41 -3.12 16 16 C -0.11 -1.95 10.05 -41.38 -0.42 -2.36 16 17 C -0.31 -5.77 6.70 29.26 0.20 -5.58 16 18 Br -0.03 -0.48 34.04 -68.01 -2.31 -2.79 16 19 S 0.38 7.90 18.32 -107.50 -1.97 5.94 16 20 C 0.11 2.17 3.68 -67.93 -0.25 1.92 16 21 C -0.21 -3.37 7.87 -26.69 -0.21 -3.58 16 22 C -0.16 -2.82 8.83 -26.70 -0.24 -3.05 16 23 H 0.28 5.94 8.31 -40.82 -0.34 5.60 16 24 H 0.13 2.14 5.04 -52.49 -0.26 1.87 16 25 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 26 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 27 H 0.13 1.87 8.06 -52.48 -0.42 1.45 16 28 H 0.12 2.43 7.89 -51.93 -0.41 2.02 16 29 H 0.09 1.54 7.37 -51.93 -0.38 1.16 16 30 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 304.69 15.07 4.59 4.59 Total: -1.00 -26.49 304.69 -10.05 -36.54 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -3.11 Total: 5.89 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -2.56 Total: -21.55 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.29 Total: -26.86 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.06 Total: -15.01 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.04 Total: 13.25 kcal Atomic # 16 Polarization: 7.90 SS G_CDS: -1.97 Total: 5.94 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -2.31 Total: -2.79 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.49 -10.05 -36.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096313822.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.812 kcal (2) G-P(sol) polarization free energy of solvation -26.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds