Wall clock time and date at job start Tue Mar 31 2020 05:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 119.99796 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99925 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99415 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00021 * 3 2 1 7 7 C 1.38952 * 120.00525 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00274 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99507 * 0.02562 * 7 2 1 10 10 C 1.34776 * 119.99876 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00113 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00461 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47280 * 179.97438 * 12 10 9 14 14 C 1.46459 * 111.00395 * 295.98214 * 13 12 10 15 15 C 1.53247 * 109.86275 * 162.23390 * 14 13 12 16 16 S 1.81898 * 108.50212 * 62.00437 * 15 14 13 17 17 C 1.81891 * 101.91537 * 308.69296 * 16 15 14 18 18 C 1.46469 * 110.99785 * 170.00099 * 13 12 10 19 19 H 1.09002 * 109.40580 * 77.64773 * 18 13 12 20 20 C 1.50709 * 109.40670 * 317.88710 * 18 13 12 21 21 C 1.38241 * 119.98515 * 319.72389 * 20 18 13 22 22 C 1.38215 * 120.00936 * 179.72404 * 21 20 18 23 23 C 1.38347 * 119.98982 * 0.55122 * 22 21 20 24 24 Cl 1.73596 * 120.01470 * 179.74342 * 23 22 21 25 25 C 1.38355 * 119.97183 * 359.72576 * 23 22 21 26 26 C 1.38211 * 119.98734 * 359.97438 * 25 23 22 27 27 H 0.97000 * 119.99509 * 179.97438 * 1 2 3 28 28 H 0.96998 * 120.00751 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.46865 * 300.00564 * 12 10 9 30 30 H 1.09004 * 109.46641 * 59.99812 * 12 10 9 31 31 H 1.09005 * 109.40855 * 282.35858 * 14 13 12 32 32 H 1.09008 * 109.40514 * 42.11499 * 14 13 12 33 33 H 1.08994 * 109.63185 * 302.29777 * 15 14 13 34 34 H 1.08998 * 109.79477 * 181.80333 * 15 14 13 35 35 H 1.09002 * 109.63663 * 291.60498 * 17 16 15 36 36 H 1.08998 * 109.63601 * 171.01024 * 17 16 15 37 37 H 1.08003 * 119.99131 * 0.02562 * 21 20 18 38 38 H 1.08004 * 120.00192 * 180.26953 * 22 21 20 39 39 H 1.08001 * 120.01063 * 180.02562 * 25 23 22 40 40 H 1.08003 * 119.99638 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0464 -1.4001 5 1 1.4454 2.6528 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5577 0.0010 12 6 1.2440 -4.8630 0.0011 13 7 2.1987 -5.9794 0.0004 14 6 2.9941 -5.9891 -1.2293 15 6 4.2468 -6.8496 -1.0323 16 16 3.7254 -8.5568 -0.6828 17 6 2.5332 -8.3159 0.6697 18 6 1.5165 -7.2535 0.2383 19 1 1.0221 -7.5763 -0.6779 20 6 0.4872 -7.0752 1.3247 21 6 0.7770 -6.2973 2.4301 22 6 -0.1686 -6.1287 3.4239 23 6 -1.4012 -6.7479 3.3178 24 17 -2.5870 -6.5421 4.5689 25 6 -1.6886 -7.5310 2.2140 26 6 -0.7445 -7.6938 1.2178 27 1 -0.4849 -0.8401 -0.0004 28 1 0.3535 -2.3907 0.0005 29 1 0.6177 -4.9205 0.8913 30 1 0.6170 -4.9209 -0.8886 31 1 2.3971 -6.3997 -2.0437 32 1 3.2903 -4.9698 -1.4772 33 1 4.8272 -6.4650 -0.1937 34 1 4.8540 -6.8302 -1.9373 35 1 3.0573 -7.9793 1.5643 36 1 2.0177 -9.2541 0.8750 37 1 1.7408 -5.8173 2.5147 38 1 0.0564 -5.5175 4.2854 39 1 -2.6508 -8.0143 2.1303 40 1 -0.9686 -8.3053 0.3562 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096407695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:38 Heat of formation + Delta-G solvation = -0.410246 kcal Electronic energy + Delta-G solvation = -25158.385074 eV Core-core repulsion = 21511.367778 eV Total energy + Delta-G solvation = -3647.017296 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37115 -38.66280 -37.30397 -36.42795 -34.34887 -32.72150 -31.57110 -31.17006 -30.54549 -29.40005 -26.35333 -24.13953 -23.96005 -23.15184 -22.05737 -20.44095 -19.60662 -17.96136 -17.49026 -16.80844 -16.47849 -16.05036 -15.44623 -15.06862 -14.82232 -14.50394 -14.35371 -14.10116 -14.01397 -13.75251 -13.66130 -13.45400 -13.32014 -12.96944 -12.45306 -12.14741 -11.97771 -11.89484 -11.74956 -11.56006 -11.27902 -11.21342 -11.00885 -10.95702 -10.67649 -10.25268 -9.92110 -9.82979 -9.53152 -9.18639 -8.76128 -8.58884 -8.15919 -8.05762 -7.72005 -6.79876 -3.93606 0.88176 1.11097 1.76772 1.96640 2.48102 3.26693 3.31988 3.37961 3.50855 3.62713 3.77703 4.23597 4.44634 4.61479 4.70269 4.77235 4.79714 4.91682 5.09932 5.15173 5.16621 5.20399 5.28497 5.32284 5.45578 5.50412 5.61238 5.70900 5.73896 5.80985 5.92026 5.98911 6.05359 6.09179 6.12039 6.33018 6.59712 6.95903 7.14148 7.75180 8.02957 8.54206 8.73900 9.41866 9.80886 10.63224 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.007725 B = 0.004425 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3623.614764 B = 6326.020893 C = 9501.071898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.008 4.008 3 Si 1.092 2.908 4 H -0.285 1.285 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.382 4.382 8 H 0.100 0.900 9 N -0.572 5.572 10 C 0.444 3.556 11 O -0.572 6.572 12 C 0.039 3.961 13 N -0.521 5.521 14 C 0.056 3.944 15 C -0.063 4.063 16 S -0.286 6.286 17 C -0.060 4.060 18 C 0.127 3.873 19 H 0.063 0.937 20 C -0.079 4.079 21 C -0.079 4.079 22 C -0.112 4.112 23 C -0.031 4.031 24 Cl -0.074 7.074 25 C -0.113 4.113 26 C -0.100 4.100 27 H 0.261 0.739 28 H 0.375 0.625 29 H 0.100 0.900 30 H 0.047 0.953 31 H 0.038 0.962 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.144 0.856 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 -16.982 2.895 17.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.211 4.211 3 Si 0.919 3.081 4 H -0.211 1.211 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.512 4.512 8 H 0.118 0.882 9 N -0.210 5.210 10 C 0.230 3.770 11 O -0.456 6.456 12 C -0.092 4.092 13 N -0.246 5.246 14 C -0.073 4.073 15 C -0.211 4.211 16 S -0.058 6.058 17 C -0.209 4.209 18 C 0.017 3.983 19 H 0.081 0.919 20 C -0.082 4.082 21 C -0.098 4.098 22 C -0.130 4.130 23 C -0.058 4.058 24 Cl -0.045 7.045 25 C -0.131 4.131 26 C -0.119 4.119 27 H 0.073 0.927 28 H 0.208 0.792 29 H 0.118 0.882 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.133 0.867 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.124 0.876 37 H 0.162 0.838 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.511 -16.192 2.870 16.513 hybrid contribution -1.525 -0.724 0.067 1.689 sum -3.035 -16.916 2.937 17.435 Atomic orbital electron populations 1.70874 1.06552 1.29456 1.46896 1.26502 0.96516 1.02645 0.95402 0.83106 0.74416 0.73463 0.77160 1.21109 1.20617 1.20897 1.20550 0.94650 0.83745 1.52208 0.88228 1.41942 1.08198 1.05553 1.65302 1.19585 0.88390 0.84216 0.84827 1.90494 1.13477 1.86705 1.54963 1.22056 0.94156 0.90649 1.02292 1.60728 1.24757 1.00970 1.38098 1.22356 0.92825 1.02983 0.89087 1.23500 1.00337 0.91542 1.05769 1.86756 1.55878 1.15552 1.47655 1.23488 0.97156 1.01118 0.99139 1.20731 0.91546 0.90352 0.95704 0.91909 1.19848 0.94465 0.97891 0.95948 1.21187 1.00095 0.96637 0.91847 1.21144 0.91895 0.99781 1.00220 1.20980 0.91495 1.01383 0.91949 1.98372 1.57298 1.96425 1.52429 1.20970 1.00279 0.99063 0.92834 1.20963 0.92461 0.99681 0.98802 0.92707 0.79209 0.88225 0.93519 0.94431 0.86690 0.88519 0.87725 0.88757 0.87643 0.83784 0.84700 0.84930 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.76 13.68 55.50 0.76 -24.00 16 2 C -0.01 -0.21 5.50 -17.47 -0.10 -0.30 16 3 Si 1.09 23.85 29.92 -169.99 -5.09 18.77 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.38 -10.39 9.68 -14.93 -0.14 -10.54 16 8 H 0.10 2.87 7.16 -52.49 -0.38 2.49 16 9 N -0.57 -13.86 5.28 -10.96 -0.06 -13.92 16 10 C 0.44 9.85 7.32 -10.98 -0.08 9.77 16 11 O -0.57 -14.40 13.91 5.55 0.08 -14.32 16 12 C 0.04 0.65 4.76 -4.97 -0.02 0.63 16 13 N -0.52 -7.79 3.58 -229.86 -0.82 -8.61 16 14 C 0.06 0.85 4.95 -3.94 -0.02 0.83 16 15 C -0.06 -0.85 6.69 37.29 0.25 -0.60 16 16 S -0.29 -3.59 22.39 -107.50 -2.41 -6.00 16 17 C -0.06 -0.68 5.94 37.29 0.22 -0.46 16 18 C 0.13 1.52 2.10 -68.97 -0.14 1.38 16 19 H 0.06 0.74 7.77 -51.93 -0.40 0.34 16 20 C -0.08 -0.90 3.67 -104.61 -0.38 -1.29 16 21 C -0.08 -0.98 7.11 -39.59 -0.28 -1.26 16 22 C -0.11 -1.32 9.83 -39.55 -0.39 -1.71 16 23 C -0.03 -0.35 6.32 -39.50 -0.25 -0.60 16 24 Cl -0.07 -0.80 28.96 -51.86 -1.50 -2.31 16 25 C -0.11 -1.13 9.83 -39.55 -0.39 -1.52 16 26 C -0.10 -0.99 9.67 -39.59 -0.38 -1.37 16 27 H 0.26 6.95 6.78 -40.82 -0.28 6.67 16 28 H 0.38 8.54 6.73 -40.82 -0.27 8.26 16 29 H 0.10 1.58 4.65 -51.93 -0.24 1.34 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.04 0.53 7.92 -51.93 -0.41 0.12 16 32 H 0.12 2.11 5.61 -51.92 -0.29 1.82 16 33 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.14 2.00 7.60 -52.48 -0.40 1.60 16 38 H 0.14 1.49 8.06 -52.48 -0.42 1.07 16 39 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.13 1.03 8.04 -52.48 -0.42 0.60 16 LS Contribution 351.49 15.07 5.30 5.30 Total: -1.00 -29.89 351.49 -10.71 -40.59 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -4.85 Total: 11.53 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -2.11 Total: -7.04 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.12 Total: -46.52 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.08 Total: -14.32 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -5.09 Total: 18.77 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -2.41 Total: -6.00 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.89 -10.71 -40.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096407695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.185 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds