Wall clock time and date at job start Tue Mar 31 2020 05:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86804 * 119.99924 * 2 1 4 4 H 1.48507 * 109.46718 * 239.99923 * 3 2 1 5 5 H 1.48502 * 109.46862 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.46960 * 119.99990 * 3 2 1 7 7 C 1.38947 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99473 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00168 * 0.02562 * 7 2 1 10 10 C 1.34781 * 120.00139 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99663 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99902 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46954 * 180.02562 * 12 10 9 14 14 C 1.46467 * 111.00163 * 66.04070 * 13 12 10 15 15 C 1.53250 * 109.79543 * 197.72873 * 14 13 12 16 16 S 1.81906 * 108.50271 * 298.03735 * 15 14 13 17 17 C 1.81899 * 101.91366 * 51.30787 * 16 15 14 18 18 C 1.46335 * 110.88037 * 192.03468 * 13 12 10 19 19 H 1.09007 * 109.36619 * 282.25652 * 18 13 12 20 20 C 1.50703 * 109.43658 * 42.08574 * 18 13 12 21 21 C 1.38235 * 119.98859 * 40.08035 * 20 18 13 22 22 C 1.38218 * 120.01222 * 179.72437 * 21 20 18 23 23 C 1.38355 * 119.98718 * 0.54384 * 22 21 20 24 24 Cl 1.73593 * 120.01131 * 179.70481 * 23 22 21 25 25 C 1.38349 * 119.97266 * 359.72882 * 23 22 21 26 26 C 1.38218 * 119.98918 * 359.97438 * 25 23 22 27 27 H 0.97001 * 120.00138 * 0.02562 * 1 2 3 28 28 H 0.97005 * 120.00148 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.47584 * 59.99537 * 12 10 9 30 30 H 1.09006 * 109.46783 * 299.99437 * 12 10 9 31 31 H 1.09002 * 109.40640 * 77.64822 * 14 13 12 32 32 H 1.08997 * 109.40556 * 317.80948 * 14 13 12 33 33 H 1.09000 * 109.63040 * 57.73661 * 15 14 13 34 34 H 1.09000 * 109.63289 * 178.13309 * 15 14 13 35 35 H 1.08991 * 109.63268 * 68.40114 * 17 16 15 36 36 H 1.09002 * 109.62632 * 188.98655 * 17 16 15 37 37 H 1.08003 * 119.99244 * 359.97438 * 21 20 18 38 38 H 1.08005 * 120.00353 * 180.27068 * 22 21 20 39 39 H 1.07994 * 120.00568 * 180.02562 * 25 23 22 40 40 H 1.07999 * 119.99467 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0010 13 7 2.1984 -5.9795 0.0030 14 6 2.9596 -6.0171 1.2537 15 6 4.2166 -6.8744 1.0707 16 16 3.7036 -8.5724 0.6674 17 6 2.5487 -8.2984 -0.7109 18 6 1.5214 -7.2450 -0.2826 19 1 1.0030 -7.5878 0.6130 20 6 0.5221 -7.0400 -1.3919 21 6 0.8411 -6.2345 -2.4691 22 6 -0.0729 -6.0507 -3.4895 23 6 -1.3115 -6.6640 -3.4272 24 17 -2.4627 -6.4274 -4.7048 25 6 -1.6323 -7.4655 -2.3462 26 6 -0.7152 -7.6536 -1.3293 27 1 -0.4850 0.8400 -0.0004 28 1 0.3534 -2.3906 -0.0002 29 1 0.6181 -4.9209 -0.8896 30 1 0.6161 -4.9204 0.8904 31 1 2.3405 -6.4457 2.0418 32 1 3.2496 -5.0039 1.5318 33 1 4.8197 -6.4712 0.2572 34 1 4.7980 -6.8736 1.9927 35 1 3.0971 -7.9419 -1.5828 36 1 2.0384 -9.2310 -0.9519 37 1 1.8062 -5.7520 -2.5152 38 1 0.1782 -5.4248 -4.3332 39 1 -2.5988 -7.9449 -2.2972 40 1 -0.9657 -8.2789 -0.4851 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096407696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:41 Heat of formation + Delta-G solvation = -1.425965 kcal Electronic energy + Delta-G solvation = -25123.374440 eV Core-core repulsion = 21476.313099 eV Total energy + Delta-G solvation = -3647.061341 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.30834 -38.52881 -37.19560 -36.36190 -33.97804 -32.66755 -31.52908 -31.19835 -30.56474 -29.34815 -26.43503 -24.23768 -23.94857 -23.08974 -21.99954 -20.31683 -19.23148 -17.92235 -17.42916 -16.72552 -16.30013 -15.73110 -15.39361 -15.05220 -14.72782 -14.53554 -14.30382 -14.01073 -13.85027 -13.76126 -13.59542 -13.39035 -13.19462 -12.88785 -12.31231 -12.06974 -11.92037 -11.81189 -11.68748 -11.56581 -11.47776 -11.18989 -11.05744 -10.89943 -10.62570 -10.47288 -10.25496 -9.78672 -9.49031 -9.11918 -8.70220 -8.52632 -8.08208 -7.98462 -7.67963 -6.45518 -3.86758 0.94557 1.17721 1.81080 2.02320 2.52378 3.16737 3.23387 3.26907 3.44519 3.69884 3.84975 4.16656 4.50861 4.67761 4.76152 4.83896 4.92290 4.97543 5.17202 5.19506 5.21497 5.24917 5.34112 5.38063 5.51686 5.56665 5.70369 5.79287 5.82718 5.88045 6.03210 6.10453 6.13090 6.16905 6.21080 6.39793 6.66304 7.04825 7.21510 7.50919 8.00942 8.56183 9.13264 9.49230 10.00054 10.71823 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.007681 B = 0.004447 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3644.471339 B = 6294.808986 C = 9481.978617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.561 5.561 10 C 0.442 3.558 11 O -0.579 6.579 12 C 0.038 3.962 13 N -0.521 5.521 14 C 0.059 3.941 15 C -0.064 4.064 16 S -0.287 6.287 17 C -0.060 4.060 18 C 0.127 3.873 19 H 0.063 0.937 20 C -0.079 4.079 21 C -0.078 4.078 22 C -0.111 4.111 23 C -0.031 4.031 24 Cl -0.075 7.075 25 C -0.113 4.113 26 C -0.100 4.100 27 H 0.272 0.728 28 H 0.392 0.608 29 H 0.100 0.900 30 H 0.048 0.952 31 H 0.038 0.962 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.145 0.855 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 -16.463 -2.999 17.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.197 5.197 10 C 0.227 3.773 11 O -0.464 6.464 12 C -0.092 4.092 13 N -0.246 5.246 14 C -0.070 4.070 15 C -0.212 4.212 16 S -0.059 6.059 17 C -0.209 4.209 18 C 0.017 3.983 19 H 0.080 0.920 20 C -0.081 4.081 21 C -0.096 4.096 22 C -0.130 4.130 23 C -0.058 4.058 24 Cl -0.046 7.046 25 C -0.132 4.132 26 C -0.119 4.119 27 H 0.082 0.918 28 H 0.225 0.775 29 H 0.118 0.882 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.130 0.870 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.163 0.837 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.906 -17.181 -2.971 17.540 hybrid contribution -1.321 1.905 -0.087 2.319 sum -3.227 -15.276 -3.058 15.910 Atomic orbital electron populations 1.69605 1.05944 1.28337 1.50183 1.25259 0.95604 0.99715 0.97190 0.85935 0.78794 0.80518 0.79081 1.19876 1.20956 1.19903 1.19630 0.93295 0.82153 1.47921 0.87945 1.41859 1.09206 1.04577 1.64040 1.19666 0.88369 0.84451 0.84803 1.90496 1.13547 1.86887 1.55434 1.22078 0.94091 0.90653 1.02410 1.60708 1.26460 1.01321 1.36080 1.22311 0.93048 1.02632 0.88984 1.23507 1.00453 0.91723 1.05523 1.86742 1.58362 1.15543 1.45302 1.23491 0.97408 1.01177 0.98797 1.20701 0.91731 0.90478 0.95408 0.91952 1.19836 0.94472 0.97739 0.96063 1.21193 1.00300 0.96409 0.91729 1.21143 0.92044 0.99815 0.99989 1.20974 0.91804 1.01285 0.91722 1.98369 1.59697 1.96061 1.50513 1.20958 1.00335 0.98932 0.92963 1.20958 0.92582 0.99801 0.98582 0.91763 0.77512 0.88175 0.93416 0.94386 0.86963 0.88493 0.87779 0.88757 0.87699 0.83720 0.84712 0.84988 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.04 13.05 55.50 0.72 -23.32 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.11 9.68 -14.94 -0.14 -8.25 16 8 H 0.10 2.89 7.16 -52.49 -0.38 2.51 16 9 N -0.56 -13.68 5.29 -10.97 -0.06 -13.74 16 10 C 0.44 9.80 7.32 -10.98 -0.08 9.72 16 11 O -0.58 -14.48 14.09 5.55 0.08 -14.40 16 12 C 0.04 0.64 4.75 -4.97 -0.02 0.62 16 13 N -0.52 -7.82 3.54 -229.97 -0.81 -8.63 16 14 C 0.06 0.89 4.96 -3.93 -0.02 0.87 16 15 C -0.06 -0.85 6.69 37.29 0.25 -0.60 16 16 S -0.29 -3.62 22.40 -107.50 -2.41 -6.02 16 17 C -0.06 -0.68 5.94 37.29 0.22 -0.46 16 18 C 0.13 1.54 2.09 -69.04 -0.14 1.39 16 19 H 0.06 0.74 7.77 -51.93 -0.40 0.34 16 20 C -0.08 -0.91 3.64 -104.62 -0.38 -1.29 16 21 C -0.08 -0.98 7.13 -39.59 -0.28 -1.26 16 22 C -0.11 -1.34 9.83 -39.55 -0.39 -1.73 16 23 C -0.03 -0.36 6.32 -39.50 -0.25 -0.61 16 24 Cl -0.08 -0.83 28.96 -51.86 -1.50 -2.33 16 25 C -0.11 -1.16 9.83 -39.55 -0.39 -1.54 16 26 C -0.10 -1.01 9.67 -39.58 -0.38 -1.39 16 27 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 29 H 0.10 1.61 4.59 -51.93 -0.24 1.38 16 30 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 31 H 0.04 0.53 7.91 -51.93 -0.41 0.12 16 32 H 0.11 2.03 5.81 -51.93 -0.30 1.73 16 33 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.15 2.04 7.59 -52.48 -0.40 1.64 16 38 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.13 1.04 8.03 -52.49 -0.42 0.62 16 LS Contribution 353.41 15.07 5.33 5.33 Total: -1.00 -28.67 353.41 -10.75 -39.42 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -4.97 Total: 12.08 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -2.11 Total: -4.01 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.15 Total: -45.69 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.08 Total: -14.40 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -2.41 Total: -6.02 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.67 -10.75 -39.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096407696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.997 kcal (2) G-P(sol) polarization free energy of solvation -28.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds