Wall clock time and date at job start Tue Mar 31 2020 05:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86804 * 119.99924 * 2 1 4 4 H 1.48507 * 109.46718 * 239.99923 * 3 2 1 5 5 H 1.48502 * 109.46862 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.46960 * 119.99990 * 3 2 1 7 7 C 1.38947 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99473 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00168 * 0.02562 * 7 2 1 10 10 C 1.34781 * 120.00139 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99663 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99902 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46954 * 180.02562 * 12 10 9 14 14 C 1.46467 * 111.00163 * 66.04070 * 13 12 10 15 15 C 1.53250 * 109.79543 * 197.72873 * 14 13 12 16 16 S 1.81906 * 108.50271 * 298.03735 * 15 14 13 17 17 C 1.81899 * 101.91366 * 51.30787 * 16 15 14 18 18 C 1.46335 * 110.88037 * 192.03468 * 13 12 10 19 19 H 1.09007 * 109.36619 * 282.25652 * 18 13 12 20 20 C 1.50703 * 109.43658 * 42.08574 * 18 13 12 21 21 C 1.38235 * 119.98859 * 40.08035 * 20 18 13 22 22 C 1.38218 * 120.01222 * 179.72437 * 21 20 18 23 23 C 1.38355 * 119.98718 * 0.54384 * 22 21 20 24 24 Cl 1.73593 * 120.01131 * 179.70481 * 23 22 21 25 25 C 1.38349 * 119.97266 * 359.72882 * 23 22 21 26 26 C 1.38218 * 119.98918 * 359.97438 * 25 23 22 27 27 H 0.97001 * 120.00138 * 0.02562 * 1 2 3 28 28 H 0.97005 * 120.00148 * 0.02562 * 9 7 2 29 29 H 1.08997 * 109.47584 * 59.99537 * 12 10 9 30 30 H 1.09006 * 109.46783 * 299.99437 * 12 10 9 31 31 H 1.09002 * 109.40640 * 77.64822 * 14 13 12 32 32 H 1.08997 * 109.40556 * 317.80948 * 14 13 12 33 33 H 1.09000 * 109.63040 * 57.73661 * 15 14 13 34 34 H 1.09000 * 109.63289 * 178.13309 * 15 14 13 35 35 H 1.08991 * 109.63268 * 68.40114 * 17 16 15 36 36 H 1.09002 * 109.62632 * 188.98655 * 17 16 15 37 37 H 1.08003 * 119.99244 * 359.97438 * 21 20 18 38 38 H 1.08005 * 120.00353 * 180.27068 * 22 21 20 39 39 H 1.07994 * 120.00568 * 180.02562 * 25 23 22 40 40 H 1.07999 * 119.99467 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6964 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0010 13 7 2.1984 -5.9795 0.0030 14 6 2.9596 -6.0171 1.2537 15 6 4.2166 -6.8744 1.0707 16 16 3.7036 -8.5724 0.6674 17 6 2.5487 -8.2984 -0.7109 18 6 1.5214 -7.2450 -0.2826 19 1 1.0030 -7.5878 0.6130 20 6 0.5221 -7.0400 -1.3919 21 6 0.8411 -6.2345 -2.4691 22 6 -0.0729 -6.0507 -3.4895 23 6 -1.3115 -6.6640 -3.4272 24 17 -2.4627 -6.4274 -4.7048 25 6 -1.6323 -7.4655 -2.3462 26 6 -0.7152 -7.6536 -1.3293 27 1 -0.4850 0.8400 -0.0004 28 1 0.3534 -2.3906 -0.0002 29 1 0.6181 -4.9209 -0.8896 30 1 0.6161 -4.9204 0.8904 31 1 2.3405 -6.4457 2.0418 32 1 3.2496 -5.0039 1.5318 33 1 4.8197 -6.4712 0.2572 34 1 4.7980 -6.8736 1.9927 35 1 3.0971 -7.9419 -1.5828 36 1 2.0384 -9.2310 -0.9519 37 1 1.8062 -5.7520 -2.5152 38 1 0.1782 -5.4248 -4.3332 39 1 -2.5988 -7.9449 -2.2972 40 1 -0.9657 -8.2789 -0.4851 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096407696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:40 Heat of formation + Delta-G solvation = -17.439518 kcal Electronic energy + Delta-G solvation = -25124.068840 eV Core-core repulsion = 21476.313099 eV Total energy + Delta-G solvation = -3647.755741 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.38458 -39.99822 -38.47778 -37.30609 -35.90402 -33.71426 -33.31259 -32.33036 -31.74613 -30.28016 -28.01321 -25.91213 -24.97626 -24.03006 -23.03584 -21.45783 -20.88624 -19.86346 -18.43301 -17.88744 -17.51455 -17.01279 -16.73838 -16.30048 -16.12785 -15.90886 -15.52796 -15.38510 -15.15001 -15.00724 -14.55548 -14.39200 -14.28004 -14.09691 -13.82083 -13.43450 -13.28616 -13.04001 -12.89296 -12.81728 -12.72118 -12.44273 -12.41594 -12.14287 -12.13026 -11.79029 -11.73925 -11.42811 -10.81587 -10.28927 -9.99065 -9.97232 -9.55609 -9.36608 -8.69124 -8.45340 -5.93737 0.05529 0.31246 0.81697 1.15358 1.39386 1.41689 1.50703 1.51980 2.05634 2.26070 2.49309 2.64162 3.21451 3.31548 3.58069 3.78475 3.84731 3.92413 3.96501 4.12474 4.16455 4.25427 4.34921 4.38918 4.40097 4.45865 4.54476 4.56578 4.70591 4.83110 4.84978 4.97565 5.02303 5.18290 5.26358 5.41423 5.47004 5.76387 5.79003 6.02427 6.11481 6.60626 7.13822 7.57152 8.12047 8.71724 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.007681 B = 0.004447 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3644.471339 B = 6294.808986 C = 9481.978617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.011 4.011 3 Si 0.989 3.011 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.329 4.329 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.444 3.556 11 O -0.609 6.609 12 C 0.055 3.945 13 N -0.533 5.533 14 C 0.063 3.937 15 C -0.061 4.061 16 S -0.280 6.280 17 C -0.056 4.056 18 C 0.132 3.868 19 H 0.078 0.922 20 C -0.083 4.083 21 C -0.090 4.090 22 C -0.122 4.122 23 C -0.039 4.039 24 Cl -0.074 7.074 25 C -0.108 4.108 26 C -0.090 4.090 27 H 0.277 0.723 28 H 0.394 0.606 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.084 0.916 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.133 0.867 39 H 0.156 0.844 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.485 -18.121 -2.600 18.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.211 4.211 3 Si 0.813 3.187 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.459 4.459 8 H 0.098 0.902 9 N -0.211 5.211 10 C 0.231 3.769 11 O -0.495 6.495 12 C -0.075 4.075 13 N -0.258 5.258 14 C -0.066 4.066 15 C -0.210 4.210 16 S -0.052 6.052 17 C -0.204 4.204 18 C 0.023 3.977 19 H 0.095 0.905 20 C -0.085 4.085 21 C -0.109 4.109 22 C -0.141 4.141 23 C -0.066 4.066 24 Cl -0.045 7.045 25 C -0.127 4.127 26 C -0.109 4.109 27 H 0.086 0.914 28 H 0.227 0.773 29 H 0.130 0.870 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.136 0.864 35 H 0.103 0.897 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.150 0.850 39 H 0.174 0.826 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.222 -18.863 -2.575 19.309 hybrid contribution -0.903 2.316 -0.252 2.499 sum -4.125 -16.547 -2.826 17.286 Atomic orbital electron populations 1.69671 1.06829 1.29247 1.50411 1.25987 0.96453 1.02287 0.96393 0.85039 0.77785 0.76915 0.78924 1.19817 1.19696 1.19654 1.19594 0.92655 0.83866 1.49782 0.90160 1.41923 1.09203 1.04741 1.65197 1.20612 0.88279 0.85665 0.82333 1.90477 1.15311 1.87682 1.56051 1.21861 0.93722 0.88360 1.03569 1.60639 1.26675 1.02220 1.36301 1.22194 0.93966 1.00983 0.89428 1.23396 0.99620 0.92398 1.05576 1.86723 1.58824 1.14019 1.45638 1.23547 0.96990 1.02026 0.97843 1.20739 0.91933 0.88880 0.96137 0.90453 1.19815 0.95154 0.98072 0.95441 1.21018 0.99645 0.97450 0.92815 1.21166 0.92582 1.00330 1.00018 1.21107 0.91556 1.01604 0.92333 1.98370 1.59463 1.96096 1.50611 1.21268 1.01290 0.98001 0.92107 1.21239 0.91358 0.99095 0.99161 0.91400 0.77296 0.87047 0.91921 0.92877 0.90570 0.90439 0.86408 0.89715 0.85127 0.86001 0.84953 0.82644 0.82136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.35 13.05 21.66 0.28 -49.07 16 2 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 3 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.33 -18.31 9.68 84.04 0.81 -17.50 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 N -0.57 -28.78 5.29 -306.99 -1.62 -30.40 16 10 C 0.44 20.23 7.32 87.66 0.64 20.87 16 11 O -0.61 -31.71 14.09 -3.06 -0.04 -31.75 16 12 C 0.06 1.85 4.75 85.56 0.41 2.25 16 13 N -0.53 -15.68 3.54 -881.48 -3.12 -18.80 16 14 C 0.06 1.88 4.96 86.47 0.43 2.31 16 15 C -0.06 -1.62 6.69 72.07 0.48 -1.14 16 16 S -0.28 -6.51 22.40 -56.49 -1.27 -7.77 16 17 C -0.06 -1.14 5.94 72.06 0.43 -0.71 16 18 C 0.13 2.90 2.09 44.36 0.09 3.00 16 19 H 0.08 1.53 7.77 -2.38 -0.02 1.52 16 20 C -0.08 -1.73 3.64 -19.86 -0.07 -1.80 16 21 C -0.09 -2.24 7.13 22.26 0.16 -2.08 16 22 C -0.12 -2.90 9.83 22.29 0.22 -2.68 16 23 C -0.04 -0.84 6.32 22.32 0.14 -0.69 16 24 Cl -0.07 -1.54 28.96 -2.72 -0.08 -1.62 16 25 C -0.11 -1.87 9.83 22.29 0.22 -1.65 16 26 C -0.09 -1.48 9.67 22.27 0.22 -1.26 16 27 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 28 H 0.39 19.10 7.90 -92.70 -0.73 18.37 16 29 H 0.11 3.53 4.59 -2.39 -0.01 3.52 16 30 H 0.06 1.93 8.12 -2.38 -0.02 1.91 16 31 H 0.05 1.40 7.91 -2.39 -0.02 1.38 16 32 H 0.08 2.84 5.81 -2.39 -0.01 2.82 16 33 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.12 3.56 7.59 -2.91 -0.02 3.54 16 38 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 40 H 0.16 1.72 8.03 -2.91 -0.02 1.70 16 Total: -1.00 -62.73 353.41 1.17 -61.56 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 0.35 Total: 34.50 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 4.64 Total: -1.21 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -4.46 Total: -98.27 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -0.04 Total: -31.75 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: -6.51 SS G_CDS: -1.27 Total: -7.77 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -62.73 1.17 -61.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096407696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.120 kcal (2) G-P(sol) polarization free energy of solvation -62.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds