Wall clock time and date at job start Tue Mar 31 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46982 * 2 1 4 4 N 1.46501 * 109.46788 * 179.97438 * 3 2 1 5 5 C 1.36909 * 120.00094 * 79.02912 * 4 3 2 6 6 H 1.08001 * 119.99822 * 312.61102 * 5 4 3 7 7 C 1.39020 * 120.00006 * 132.88248 * 5 4 3 8 8 N 1.31385 * 119.99985 * 352.76215 * 7 5 4 9 9 Si 1.86798 * 119.99631 * 172.75928 * 7 5 4 10 10 H 1.48495 * 109.47570 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46869 * 120.00470 * 9 7 5 12 12 H 1.48506 * 109.46851 * 239.99941 * 9 7 5 13 13 C 1.34775 * 120.00180 * 259.02700 * 4 3 2 14 14 O 1.21622 * 120.00366 * 172.38014 * 13 4 3 15 15 C 1.47391 * 119.99852 * 352.38400 * 13 4 3 16 16 C 1.39795 * 120.18717 * 30.47166 * 15 13 4 17 17 C 1.37727 * 119.90821 * 179.72637 * 16 15 13 18 18 C 1.38678 * 120.29611 * 0.57859 * 17 16 15 19 19 Br 1.89099 * 119.80840 * 179.72342 * 18 17 16 20 20 C 1.38183 * 120.38035 * 359.69892 * 18 17 16 21 21 C 1.38636 * 120.08379 * 359.97438 * 20 18 17 22 22 O 1.35652 * 120.15213 * 179.97438 * 21 20 18 23 23 C 1.42902 * 116.99900 * 0.02593 * 22 21 20 24 24 H 1.09003 * 109.47213 * 299.99983 * 1 2 3 25 25 H 1.09001 * 109.47261 * 60.00100 * 1 2 3 26 26 H 1.09002 * 109.47131 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47213 * 240.00017 * 2 1 3 28 28 H 1.08997 * 109.46952 * 120.00307 * 2 1 3 29 29 H 1.09001 * 109.46807 * 60.00395 * 3 2 1 30 30 H 1.09001 * 109.47041 * 300.00035 * 3 2 1 31 31 H 0.96994 * 119.99535 * 185.01491 * 8 7 5 32 32 H 1.07996 * 120.04181 * 0.02562 * 16 15 13 33 33 H 1.08009 * 119.84966 * 180.30251 * 17 16 15 34 34 H 1.08001 * 119.95869 * 180.02562 * 20 18 17 35 35 H 1.08997 * 109.47558 * 179.97438 * 23 22 21 36 36 H 1.09000 * 109.46784 * 299.99750 * 23 22 21 37 37 H 1.08998 * 109.47398 * 59.99782 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.2166 -1.1630 6 1 3.9119 0.3915 -1.8020 7 6 5.2473 2.0460 -1.5194 8 7 5.4994 3.1275 -0.8172 9 14 6.3094 1.6227 -2.9966 10 1 5.8207 0.3633 -3.6131 11 1 6.2340 2.7223 -3.9918 12 1 7.7177 1.4465 -2.5593 13 6 4.1784 1.6648 1.1467 14 8 5.3865 1.5285 1.1784 15 6 3.4507 2.0730 2.3617 16 6 2.1355 1.6473 2.5697 17 6 1.4628 2.0275 3.7098 18 6 2.0802 2.8412 4.6478 19 35 1.1410 3.3613 6.2045 20 6 3.3778 3.2738 4.4517 21 6 4.0720 2.8950 3.3130 22 8 5.3458 3.3193 3.1188 23 6 5.9123 4.1553 4.1298 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 6.1896 3.7441 -1.1074 32 1 1.6493 1.0172 1.8397 33 1 0.4484 1.6940 3.8719 34 1 3.8522 3.9070 5.1868 35 1 6.9319 4.4219 3.8516 36 1 5.3140 5.0609 4.2297 37 1 5.9233 3.6205 5.0795 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096409849.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:58 Heat of formation + Delta-G solvation = -3.745161 kcal Electronic energy + Delta-G solvation = -22490.553601 eV Core-core repulsion = 19088.492473 eV Total energy + Delta-G solvation = -3402.061128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.15848 -38.24089 -36.87186 -35.09296 -32.95847 -31.98327 -30.99984 -30.01854 -29.24891 -27.02975 -25.81569 -24.67376 -22.46342 -22.02440 -20.93711 -19.77865 -17.56193 -16.83460 -16.07039 -15.90202 -15.37182 -15.22241 -14.90656 -14.22088 -13.87751 -13.61988 -13.43410 -13.24865 -12.88111 -12.74995 -12.23250 -11.99007 -11.66283 -11.56230 -11.29142 -11.12102 -11.08023 -10.92613 -10.75332 -10.72756 -10.54931 -10.28170 -10.25719 -10.18199 -9.76446 -8.73445 -8.49329 -8.03658 -7.80623 -7.02830 -6.07272 -3.87566 1.15810 1.62086 1.66782 3.29533 3.37995 3.40841 3.66388 3.68040 4.24364 4.68662 4.89848 4.99161 5.18231 5.24375 5.32514 5.40130 5.42244 5.45097 5.51253 5.63884 5.73260 5.73729 5.85186 5.98082 5.98880 6.18348 6.29158 6.30739 6.37469 6.51255 6.55633 6.67541 6.85478 6.91681 7.63706 7.77941 8.32183 9.09846 9.23203 9.65395 10.36259 11.00862 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.004254 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.829272 B = 6581.031890 C = 8107.341376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.070 3.930 4 N -0.448 5.448 5 C -0.335 4.335 6 H 0.078 0.922 7 C 0.061 3.939 8 N -0.830 5.830 9 Si 0.915 3.085 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.281 1.281 13 C 0.521 3.479 14 O -0.514 6.514 15 C -0.114 4.114 16 C -0.090 4.090 17 C -0.142 4.142 18 C -0.048 4.048 19 Br -0.065 7.065 20 C -0.199 4.199 21 C 0.178 3.822 22 O -0.266 6.266 23 C 0.023 3.977 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.264 0.736 32 H 0.172 0.828 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.099 0.901 36 H 0.051 0.949 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.177 1.266 12.228 15.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C -0.054 4.054 4 N -0.170 5.170 5 C -0.462 4.462 6 H 0.096 0.904 7 C -0.149 4.149 8 N -0.464 5.464 9 Si 0.742 3.258 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.207 1.207 13 C 0.308 3.692 14 O -0.391 6.391 15 C -0.119 4.119 16 C -0.109 4.109 17 C -0.162 4.162 18 C -0.128 4.128 19 Br 0.021 6.979 20 C -0.220 4.220 21 C 0.129 3.871 22 O -0.176 6.176 23 C -0.073 4.073 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.189 0.811 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.541 1.495 12.691 15.948 hybrid contribution 0.640 0.138 -0.761 1.003 sum -8.901 1.633 11.931 14.974 Atomic orbital electron populations 1.21761 0.96178 1.01216 1.01654 1.21987 0.94804 0.98950 1.02692 1.22488 0.85080 0.95245 1.02568 1.43052 1.02417 1.64967 1.06548 1.19013 1.14906 1.13233 0.99091 0.90399 1.25415 0.97816 0.94598 0.97038 1.69835 1.30163 1.10050 1.36354 0.86092 0.80463 0.78255 0.80945 1.19520 1.21086 1.20744 1.17496 0.87298 0.82901 0.81483 1.90629 1.13432 1.51817 1.83229 1.20266 0.94405 0.99694 0.97565 1.22305 0.92911 0.99375 0.96349 1.20886 1.00779 1.00513 0.94059 1.21468 0.95035 1.02371 0.93942 1.96632 1.75544 1.91170 1.34587 1.21003 0.94887 1.06730 0.99336 1.18980 0.84463 0.91907 0.91782 1.86506 1.23848 1.62819 1.44412 1.23092 0.99560 0.93411 0.91224 0.92986 0.92616 0.93022 0.91009 0.92141 0.89668 0.91863 0.92615 0.81122 0.85093 0.84727 0.88239 0.93063 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.85 37.16 0.37 -1.46 16 2 C -0.15 -2.34 5.24 -26.73 -0.14 -2.48 16 3 C 0.07 1.36 4.85 -4.04 -0.02 1.34 16 4 N -0.45 -11.29 2.53 -116.04 -0.29 -11.58 16 5 C -0.34 -9.19 9.06 -14.99 -0.14 -9.33 16 6 H 0.08 2.05 7.81 -52.49 -0.41 1.64 16 7 C 0.06 1.73 4.75 -17.45 -0.08 1.65 16 8 N -0.83 -24.81 11.48 55.50 0.64 -24.17 16 9 Si 0.92 21.77 29.56 -169.99 -5.03 16.74 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.52 13.77 6.38 -12.54 -0.08 13.69 16 14 O -0.51 -15.75 13.86 -13.77 -0.19 -15.94 16 15 C -0.11 -2.48 5.61 -104.84 -0.59 -3.07 16 16 C -0.09 -1.56 7.50 -39.19 -0.29 -1.86 16 17 C -0.14 -2.11 9.76 -39.61 -0.39 -2.49 16 18 C -0.05 -0.73 6.23 -39.44 -0.25 -0.97 16 19 Br -0.06 -0.79 33.69 -68.01 -2.29 -3.08 16 20 C -0.20 -3.24 8.76 -39.45 -0.35 -3.58 16 21 C 0.18 3.61 6.67 -38.68 -0.26 3.35 16 22 O -0.27 -5.71 9.01 -37.68 -0.34 -6.05 16 23 C 0.02 0.33 9.81 101.05 0.99 1.33 16 24 H 0.05 0.56 7.88 -51.93 -0.41 0.15 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 28 H 0.06 0.97 7.28 -51.93 -0.38 0.59 16 29 H 0.09 1.53 3.72 -56.00 -0.21 1.32 16 30 H 0.06 1.24 8.12 -51.93 -0.42 0.81 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.17 2.71 2.58 -52.49 -0.14 2.58 16 33 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.13 1.86 6.30 -52.49 -0.33 1.53 16 35 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 37 H 0.05 0.63 7.66 -51.93 -0.40 0.24 16 LS Contribution 323.82 15.07 4.88 4.88 Total: -1.00 -33.82 323.82 -8.18 -42.00 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -4.34 Total: 1.08 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.22 Total: -3.87 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.34 Total: -35.76 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.53 Total: -21.99 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Atomic # 35 Polarization: -0.79 SS G_CDS: -2.29 Total: -3.08 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.82 -8.18 -42.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096409849.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.252 kcal (2) G-P(sol) polarization free energy of solvation -33.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds