Wall clock time and date at job start Tue Mar 31 2020 05:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46982 * 2 1 4 4 N 1.46501 * 109.46788 * 179.97438 * 3 2 1 5 5 C 1.36909 * 120.00094 * 79.02912 * 4 3 2 6 6 H 1.08001 * 119.99822 * 312.61102 * 5 4 3 7 7 C 1.39020 * 120.00006 * 132.88248 * 5 4 3 8 8 N 1.31385 * 119.99985 * 352.76215 * 7 5 4 9 9 Si 1.86798 * 119.99631 * 172.75928 * 7 5 4 10 10 H 1.48495 * 109.47570 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46869 * 120.00470 * 9 7 5 12 12 H 1.48506 * 109.46851 * 239.99941 * 9 7 5 13 13 C 1.34775 * 120.00180 * 259.02700 * 4 3 2 14 14 O 1.21622 * 120.00366 * 172.38014 * 13 4 3 15 15 C 1.47391 * 119.99852 * 352.38400 * 13 4 3 16 16 C 1.39795 * 120.18717 * 30.47166 * 15 13 4 17 17 C 1.37727 * 119.90821 * 179.72637 * 16 15 13 18 18 C 1.38678 * 120.29611 * 0.57859 * 17 16 15 19 19 Br 1.89099 * 119.80840 * 179.72342 * 18 17 16 20 20 C 1.38183 * 120.38035 * 359.69892 * 18 17 16 21 21 C 1.38636 * 120.08379 * 359.97438 * 20 18 17 22 22 O 1.35652 * 120.15213 * 179.97438 * 21 20 18 23 23 C 1.42902 * 116.99900 * 0.02593 * 22 21 20 24 24 H 1.09003 * 109.47213 * 299.99983 * 1 2 3 25 25 H 1.09001 * 109.47261 * 60.00100 * 1 2 3 26 26 H 1.09002 * 109.47131 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47213 * 240.00017 * 2 1 3 28 28 H 1.08997 * 109.46952 * 120.00307 * 2 1 3 29 29 H 1.09001 * 109.46807 * 60.00395 * 3 2 1 30 30 H 1.09001 * 109.47041 * 300.00035 * 3 2 1 31 31 H 0.96994 * 119.99535 * 185.01491 * 8 7 5 32 32 H 1.07996 * 120.04181 * 0.02562 * 16 15 13 33 33 H 1.08009 * 119.84966 * 180.30251 * 17 16 15 34 34 H 1.08001 * 119.95869 * 180.02562 * 20 18 17 35 35 H 1.08997 * 109.47558 * 179.97438 * 23 22 21 36 36 H 1.09000 * 109.46784 * 299.99750 * 23 22 21 37 37 H 1.08998 * 109.47398 * 59.99782 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.2166 -1.1630 6 1 3.9119 0.3915 -1.8020 7 6 5.2473 2.0460 -1.5194 8 7 5.4994 3.1275 -0.8172 9 14 6.3094 1.6227 -2.9966 10 1 5.8207 0.3633 -3.6131 11 1 6.2340 2.7223 -3.9918 12 1 7.7177 1.4465 -2.5593 13 6 4.1784 1.6648 1.1467 14 8 5.3865 1.5285 1.1784 15 6 3.4507 2.0730 2.3617 16 6 2.1355 1.6473 2.5697 17 6 1.4628 2.0275 3.7098 18 6 2.0802 2.8412 4.6478 19 35 1.1410 3.3613 6.2045 20 6 3.3778 3.2738 4.4517 21 6 4.0720 2.8950 3.3130 22 8 5.3458 3.3193 3.1188 23 6 5.9123 4.1553 4.1298 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 6.1896 3.7441 -1.1074 32 1 1.6493 1.0172 1.8397 33 1 0.4484 1.6940 3.8719 34 1 3.8522 3.9070 5.1868 35 1 6.9319 4.4219 3.8516 36 1 5.3140 5.0609 4.2297 37 1 5.9233 3.6205 5.0795 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096409849.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:57 Heat of formation + Delta-G solvation = -24.323853 kcal Electronic energy + Delta-G solvation = -22491.445960 eV Core-core repulsion = 19088.492473 eV Total energy + Delta-G solvation = -3402.953487 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 341.041 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.63866 -39.89446 -38.34778 -36.80966 -34.78419 -33.32149 -32.74796 -31.34324 -30.56434 -28.33100 -27.37867 -26.42545 -23.94186 -23.41211 -22.30584 -21.48984 -19.14989 -18.45576 -17.79439 -17.40084 -16.75513 -16.72446 -16.53487 -15.74377 -15.69318 -15.24119 -14.81275 -14.55153 -14.33360 -14.06985 -13.64373 -13.45961 -13.22546 -12.96725 -12.90917 -12.70938 -12.54806 -12.41335 -12.38406 -12.11225 -12.07345 -11.77142 -11.65139 -11.33183 -11.13063 -10.78813 -10.07570 -9.75909 -9.24129 -9.00474 -8.17147 -6.02436 -0.22086 0.30016 0.48050 1.36809 1.43289 1.52571 2.18471 2.34238 2.39664 2.86590 3.20783 3.30497 3.70515 3.92042 4.05346 4.07991 4.15363 4.26991 4.32134 4.34071 4.45273 4.51808 4.62827 4.65575 4.71334 4.86245 4.99725 5.08563 5.14402 5.21200 5.28537 5.35502 5.49965 5.54959 5.62250 6.22627 6.46894 7.05574 7.26439 7.66951 8.40493 8.91423 Molecular weight = 341.04amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.004254 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.829272 B = 6581.031890 C = 8107.341376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.067 3.933 4 N -0.465 5.465 5 C -0.351 4.351 6 H 0.081 0.919 7 C 0.007 3.993 8 N -0.872 5.872 9 Si 0.979 3.021 10 H -0.254 1.254 11 H -0.272 1.272 12 H -0.295 1.295 13 C 0.511 3.489 14 O -0.575 6.575 15 C -0.160 4.160 16 C -0.082 4.082 17 C -0.130 4.130 18 C -0.045 4.045 19 Br -0.025 7.025 20 C -0.190 4.190 21 C 0.158 3.842 22 O -0.316 6.316 23 C 0.015 3.985 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.258 0.742 32 H 0.183 0.817 33 H 0.172 0.828 34 H 0.160 0.840 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.137 1.126 13.976 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C -0.055 4.055 4 N -0.186 5.186 5 C -0.479 4.479 6 H 0.099 0.901 7 C -0.198 4.198 8 N -0.507 5.507 9 Si 0.804 3.196 10 H -0.178 1.178 11 H -0.197 1.197 12 H -0.222 1.222 13 C 0.301 3.699 14 O -0.457 6.457 15 C -0.165 4.165 16 C -0.101 4.101 17 C -0.149 4.149 18 C -0.125 4.125 19 Br 0.060 6.940 20 C -0.210 4.210 21 C 0.109 3.891 22 O -0.228 6.228 23 C -0.080 4.080 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.199 0.801 33 H 0.189 0.811 34 H 0.177 0.823 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.571 1.349 14.438 19.191 hybrid contribution 1.447 0.195 -1.091 1.822 sum -11.124 1.544 13.347 17.443 Atomic orbital electron populations 1.21723 0.92446 1.02916 1.02930 1.21881 0.97871 0.96012 1.01755 1.22725 0.81781 0.97836 1.03149 1.43337 1.04748 1.64684 1.05818 1.19340 1.15607 1.13252 0.99721 0.90143 1.26310 0.99081 0.94509 0.99942 1.69990 1.31035 1.11359 1.38342 0.85116 0.77618 0.78979 0.77927 1.17772 1.19699 1.22187 1.18257 0.87078 0.81555 0.83032 1.90554 1.16107 1.54250 1.84743 1.20097 0.96487 1.03140 0.96755 1.22363 0.91186 0.98908 0.97624 1.21270 1.02040 0.99153 0.92464 1.21809 0.94707 1.00887 0.95062 1.96690 1.74374 1.90783 1.32107 1.21197 0.95262 1.06324 0.98234 1.19226 0.84522 0.92512 0.92862 1.86433 1.24963 1.64134 1.47242 1.23381 0.99884 0.93707 0.90995 0.90895 0.92207 0.91116 0.92827 0.92300 0.87823 0.92499 0.93261 0.80063 0.81098 0.82297 0.87776 0.91139 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.85 71.98 0.71 -2.30 16 2 C -0.14 -4.26 5.24 30.59 0.16 -4.10 16 3 C 0.07 2.63 4.85 86.38 0.42 3.05 16 4 N -0.46 -24.36 2.53 -639.29 -1.62 -25.98 16 5 C -0.35 -20.07 9.06 84.09 0.76 -19.31 16 6 H 0.08 4.39 7.81 -2.91 -0.02 4.36 16 7 C 0.01 0.41 4.75 84.95 0.40 0.81 16 8 N -0.87 -55.02 11.48 21.68 0.25 -54.77 16 9 Si 0.98 46.46 29.56 68.60 2.03 48.49 16 10 H -0.25 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 12 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 13 C 0.51 28.41 6.38 86.65 0.55 28.96 16 14 O -0.58 -37.60 13.86 14.09 0.20 -37.40 16 15 C -0.16 -7.10 5.61 -20.00 -0.11 -7.21 16 16 C -0.08 -2.71 7.50 22.53 0.17 -2.55 16 17 C -0.13 -3.36 9.76 22.25 0.22 -3.14 16 18 C -0.04 -1.19 6.23 22.36 0.14 -1.05 16 19 Br -0.03 -0.51 33.69 -20.37 -0.69 -1.19 16 20 C -0.19 -5.80 8.76 22.35 0.20 -5.61 16 21 C 0.16 6.47 6.67 22.85 0.15 6.62 16 22 O -0.32 -14.19 9.01 -71.49 -0.64 -14.83 16 23 C 0.01 0.43 9.81 113.37 1.11 1.54 16 24 H 0.07 1.26 7.88 -2.39 -0.02 1.24 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 28 H 0.06 1.84 7.28 -2.39 -0.02 1.83 16 29 H 0.10 3.64 3.72 -6.21 -0.02 3.62 16 30 H 0.06 2.25 8.12 -2.39 -0.02 2.23 16 31 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 32 H 0.18 5.43 2.58 -2.91 -0.01 5.42 16 33 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.16 3.95 6.30 -2.91 -0.02 3.93 16 35 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.07 1.75 7.66 -2.39 -0.02 1.73 16 37 H 0.07 1.78 7.66 -2.39 -0.02 1.76 16 Total: -1.00 -80.04 323.82 5.49 -74.56 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 1.09 Total: 15.40 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 4.88 Total: -4.27 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -1.37 Total: -80.74 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -0.45 Total: -52.23 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -0.69 Total: -1.19 kcal Total: -80.04 5.49 -74.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096409849.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.233 kcal (2) G-P(sol) polarization free energy of solvation -80.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds