Wall clock time and date at job start Tue Mar 31 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42897 * 109.46907 * 2 1 4 4 C 1.35976 * 116.99725 * 179.97438 * 3 2 1 5 5 C 1.38721 * 119.98339 * 359.72776 * 4 3 2 6 6 C 1.38087 * 120.01523 * 179.72436 * 5 4 3 7 7 C 1.38855 * 119.98257 * 0.56945 * 6 5 4 8 8 N 1.40104 * 120.01402 * 179.68201 * 7 6 5 9 9 C 1.46497 * 119.99808 * 247.91045 * 8 7 6 10 10 C 1.50704 * 109.47159 * 90.00530 * 9 8 7 11 11 H 1.08004 * 120.00022 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00252 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99717 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99975 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47396 * 59.99507 * 14 12 10 16 16 H 1.48496 * 109.46924 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46704 * 299.99569 * 14 12 10 18 18 C 1.34775 * 120.00002 * 67.91526 * 8 7 6 19 19 O 1.21292 * 120.00322 * 4.73346 * 18 8 7 20 20 C 1.50710 * 119.99895 * 184.73746 * 18 8 7 21 21 C 1.50701 * 109.47119 * 179.97438 * 20 18 8 22 22 C 1.38677 * 120.41549 * 269.72100 * 21 20 18 23 23 C 1.38621 * 118.41786 * 179.78148 * 22 21 20 24 24 C 1.38230 * 119.16542 * 0.51254 * 23 22 21 25 25 N 1.31861 * 120.75769 * 359.72566 * 24 23 22 26 26 C 1.31880 * 121.72627 * 359.97438 * 25 24 23 27 27 C 1.38841 * 119.96830 * 359.70359 * 7 6 5 28 28 C 1.38091 * 119.98804 * 359.97438 * 27 7 6 29 29 H 1.09005 * 109.46805 * 300.00133 * 1 2 3 30 30 H 1.09004 * 109.46732 * 59.99888 * 1 2 3 31 31 H 1.08993 * 109.47180 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46704 * 239.99730 * 2 1 3 33 33 H 1.09004 * 109.46732 * 120.00112 * 2 1 3 34 34 H 1.08000 * 119.99169 * 359.97438 * 5 4 3 35 35 H 1.07996 * 120.01216 * 180.27076 * 6 5 4 36 36 H 1.08998 * 109.47259 * 210.00127 * 9 8 7 37 37 H 1.09000 * 109.47643 * 330.00261 * 9 8 7 38 38 H 0.97000 * 120.00096 * 179.97438 * 13 12 10 39 39 H 1.09000 * 109.46802 * 299.99500 * 20 18 8 40 40 H 1.08992 * 109.47160 * 59.99756 * 20 18 8 41 41 H 1.08001 * 120.78812 * 0.02562 * 22 21 20 42 42 H 1.08001 * 120.42132 * 180.21580 * 23 22 21 43 43 H 1.07995 * 119.62373 * 179.74603 * 24 23 22 44 44 H 1.07998 * 119.61539 * 180.02562 * 26 25 24 45 45 H 1.08002 * 120.00770 * 179.97438 * 27 7 6 46 46 H 1.07994 * 119.99580 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5254 0.0005 5 6 4.1991 0.4250 0.0068 6 6 5.5681 0.6052 0.0016 7 6 6.0992 1.8881 0.0021 8 7 7.4882 2.0716 0.0035 9 6 8.1506 2.6406 1.1798 10 6 8.5497 1.5306 2.1177 11 1 8.3314 0.5039 1.8632 12 6 9.1927 1.8256 3.3011 13 7 9.4581 3.0758 3.6113 14 14 9.6868 0.4496 4.4639 15 1 10.6192 -0.4743 3.7697 16 1 10.3583 1.0264 5.6562 17 1 8.4758 -0.2970 4.8900 18 6 8.2149 1.7248 -1.0772 19 8 7.6590 1.3344 -2.0821 20 6 9.7183 1.8218 -1.0372 21 6 10.2858 1.3785 -2.3610 22 6 10.6174 0.0487 -2.5728 23 6 11.1320 -0.3142 -3.8077 24 6 11.3065 0.6563 -4.7764 25 7 10.9846 1.9126 -4.5380 26 6 10.4871 2.2928 -3.3773 27 6 5.2532 2.9890 0.0016 28 6 3.8843 2.8074 0.0000 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.7858 -0.5728 0.0116 35 1 6.2257 -0.2515 0.0020 36 1 9.0392 3.1888 0.8668 37 1 7.4663 3.3187 1.6898 38 1 9.9101 3.2834 4.4440 39 1 10.0107 2.8538 -0.8434 40 1 10.1028 1.1803 -0.2443 41 1 10.4743 -0.6873 -1.7955 42 1 11.3979 -1.3415 -4.0088 43 1 11.7107 0.3825 -5.7397 44 1 10.2349 3.3309 -3.2191 45 1 5.6656 3.9872 0.0024 46 1 3.2261 3.6636 -0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096410112.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:49 Heat of formation + Delta-G solvation = -12.592924 kcal Electronic energy + Delta-G solvation = -28755.527034 eV Core-core repulsion = 24803.494530 eV Total energy + Delta-G solvation = -3952.032504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.35442 -39.90523 -39.04432 -37.08982 -34.86956 -33.29009 -32.67101 -31.83257 -31.67290 -30.65009 -29.07286 -27.57612 -26.73337 -24.05022 -23.37538 -23.18432 -22.75623 -21.89198 -21.15023 -18.87752 -18.09255 -16.93784 -16.82564 -16.70208 -16.18524 -16.07091 -15.90201 -15.63300 -14.92102 -14.54023 -14.30580 -14.18054 -13.69396 -13.54074 -13.31506 -13.28442 -13.13079 -12.87975 -12.81745 -12.67751 -12.48668 -12.12564 -11.83302 -11.76607 -11.65663 -11.57130 -11.25520 -11.10891 -10.86086 -10.68600 -10.58168 -10.29125 -9.90973 -9.64980 -9.34388 -9.27236 -8.75207 -8.67202 -8.62169 -8.32584 -7.47008 -6.26728 -4.34748 1.29035 1.48396 1.66997 1.74576 3.18029 3.19525 3.24238 3.27700 3.28785 3.69257 4.06436 4.10667 4.27188 4.60041 4.82077 4.86129 4.96395 4.99643 5.06894 5.08246 5.17015 5.19528 5.20332 5.24659 5.37566 5.40512 5.57705 5.64956 5.66124 5.70294 5.81401 5.87713 5.92322 5.96152 6.13595 6.21064 6.27226 6.31841 6.52032 6.60690 6.72782 6.84786 6.89725 6.98031 7.09028 7.45858 7.63734 7.70510 7.93688 8.12504 8.13713 8.67458 8.87504 9.33169 10.79999 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006946 B = 0.004009 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4029.903453 B = 6983.264805 C = 9838.539740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.113 3.887 5 C -0.198 4.198 6 C -0.067 4.067 7 C 0.141 3.859 8 N -0.558 5.558 9 C 0.238 3.762 10 C -0.540 4.540 11 H 0.061 0.939 12 C 0.068 3.932 13 N -0.889 5.889 14 Si 0.896 3.104 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.276 1.276 18 C 0.524 3.476 19 O -0.554 6.554 20 C -0.095 4.095 21 C -0.102 4.102 22 C -0.063 4.063 23 C -0.174 4.174 24 C 0.086 3.914 25 N -0.487 5.487 26 C 0.109 3.891 27 C -0.084 4.084 28 C -0.142 4.142 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.043 0.957 37 H 0.040 0.960 38 H 0.267 0.733 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.130 0.870 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.071 -4.975 -8.024 11.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.068 3.932 5 C -0.217 4.217 6 C -0.086 4.086 7 C 0.050 3.950 8 N -0.286 5.286 9 C 0.119 3.881 10 C -0.579 4.579 11 H 0.079 0.921 12 C -0.135 4.135 13 N -0.527 5.527 14 Si 0.723 3.277 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.201 1.201 18 C 0.313 3.687 19 O -0.433 6.433 20 C -0.135 4.135 21 C -0.104 4.104 22 C -0.089 4.089 23 C -0.193 4.193 24 C -0.071 4.071 25 N -0.195 5.195 26 C -0.048 4.048 27 C -0.104 4.104 28 C -0.161 4.161 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.124 0.876 40 H 0.137 0.863 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.168 0.832 44 H 0.169 0.831 45 H 0.148 0.852 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.264 -4.271 -9.045 11.802 hybrid contribution 0.306 -1.671 1.715 2.414 sum -5.958 -5.942 -7.331 11.160 Atomic orbital electron populations 1.21764 0.93061 1.02588 1.03369 1.22719 0.95529 0.82504 1.01376 1.86035 1.19388 1.28765 1.89241 1.18871 0.81809 0.94144 0.98335 1.21000 0.93766 0.97744 1.09237 1.20990 0.94153 0.96808 0.96694 1.17443 0.83829 0.92478 1.01250 1.45916 1.03808 1.61859 1.16970 1.19595 0.93126 0.94395 0.80939 1.21375 1.38989 0.93459 1.04063 0.92117 1.24907 0.95345 0.95698 0.97577 1.69894 1.40867 1.17356 1.24534 0.86583 0.78876 0.81961 0.80252 1.20034 1.21049 1.20119 1.20389 0.89138 0.76895 0.82277 1.90665 1.73210 1.47551 1.31878 1.20617 0.92452 1.05232 0.95215 1.20518 0.98602 0.94540 0.96740 1.21485 0.94709 0.95626 0.97116 1.22055 1.01788 1.00891 0.94598 1.22647 0.96951 0.88552 0.98978 1.67644 1.11102 1.18981 1.21814 1.22585 0.94352 0.99883 0.87957 1.21016 0.92019 0.98773 0.98572 1.20160 0.94500 0.94623 1.06864 0.91597 0.91650 0.90616 0.92220 0.92123 0.85802 0.86038 0.93869 0.94198 0.92317 0.87562 0.86322 0.84976 0.85138 0.83240 0.83087 0.85224 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 2 C 0.05 0.58 5.46 37.16 0.20 0.79 16 3 O -0.32 -4.61 10.14 -19.67 -0.20 -4.80 16 4 C 0.11 1.82 6.69 -39.22 -0.26 1.56 16 5 C -0.20 -3.22 9.03 -39.46 -0.36 -3.57 16 6 C -0.07 -1.25 9.55 -39.41 -0.38 -1.63 16 7 C 0.14 2.80 4.76 -83.62 -0.40 2.40 16 8 N -0.56 -11.42 2.51 -114.69 -0.29 -11.71 16 9 C 0.24 5.34 4.88 -5.19 -0.03 5.31 16 10 C -0.54 -13.28 9.16 -34.44 -0.32 -13.60 16 11 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 12 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -23.47 13.29 55.43 0.74 -22.74 16 14 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 C 0.52 10.38 7.52 -10.98 -0.08 10.29 16 19 O -0.55 -12.21 15.79 5.55 0.09 -12.12 16 20 C -0.10 -1.61 4.52 -29.03 -0.13 -1.74 16 21 C -0.10 -1.62 4.39 -104.48 -0.46 -2.08 16 22 C -0.06 -0.92 9.86 -39.28 -0.39 -1.31 16 23 C -0.17 -2.20 10.11 -39.44 -0.40 -2.60 16 24 C 0.09 1.14 11.18 -17.54 -0.20 0.94 16 25 N -0.49 -7.63 10.36 -13.25 -0.14 -7.77 16 26 C 0.11 1.72 10.86 -17.55 -0.19 1.53 16 27 C -0.08 -1.50 9.68 -39.41 -0.38 -1.88 16 28 C -0.14 -2.30 9.98 -39.46 -0.39 -2.70 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.60 7.67 -51.93 -0.40 0.21 16 33 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 34 H 0.12 1.67 6.29 -52.49 -0.33 1.34 16 35 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 36 H 0.04 0.96 6.47 -51.93 -0.34 0.63 16 37 H 0.04 0.96 7.86 -51.93 -0.41 0.55 16 38 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 39 H 0.11 1.66 7.21 -51.93 -0.37 1.29 16 40 H 0.12 2.05 7.86 -51.93 -0.41 1.64 16 41 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 44 H 0.15 2.13 8.06 -52.49 -0.42 1.70 16 45 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 46 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 394.28 15.07 5.94 5.94 Total: -1.00 -30.41 394.28 -9.17 -39.59 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.43 Total: 6.36 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -3.87 Total: -7.52 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.31 Total: -42.21 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.11 Total: -16.93 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.41 -9.17 -39.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096410112.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.993 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds