Wall clock time and date at job start Tue Mar 31 2020 06:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00036 * 2 1 4 4 H 1.48505 * 109.47240 * 270.00545 * 3 2 1 5 5 H 1.48500 * 109.46873 * 30.00301 * 3 2 1 6 6 H 1.48499 * 109.46934 * 150.00669 * 3 2 1 7 7 C 1.37874 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00264 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00292 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47176 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.46790 * 180.02562 * 10 9 7 12 12 N 1.28784 * 125.45260 * 90.02322 * 11 10 9 13 13 N 1.28992 * 108.72547 * 179.73423 * 12 11 10 14 14 C 1.33314 * 107.35685 * 359.97438 * 13 12 11 15 15 C 1.50702 * 126.54797 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.47067 * 165.02552 * 15 14 13 17 17 N 1.46497 * 109.47412 * 45.02293 * 15 14 13 18 18 C 1.34777 * 119.99894 * 154.99733 * 17 15 14 19 19 O 1.21551 * 120.00390 * 0.02562 * 18 17 15 20 20 C 1.47851 * 119.99755 * 179.97438 * 18 17 15 21 21 C 1.39574 * 120.14465 * 359.72583 * 20 18 17 22 22 C 1.37959 * 119.85356 * 179.78521 * 21 20 18 23 23 C 1.38357 * 120.14293 * 0.49457 * 22 21 20 24 24 C 1.38359 * 120.29249 * 359.73466 * 23 22 21 25 25 C 1.37955 * 120.14846 * 0.02894 * 24 23 22 26 26 C 1.52996 * 109.47194 * 285.02190 * 15 14 13 27 27 C 1.53001 * 117.49914 * 248.62441 * 26 15 14 28 28 C 1.52999 * 60.00000 * 252.50967 * 27 26 15 29 29 N 1.28885 * 125.44691 * 269.71258 * 11 10 9 30 30 H 0.97002 * 120.00020 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.46682 * 60.00047 * 9 7 2 32 32 H 1.09002 * 109.46556 * 300.00313 * 9 7 2 33 33 H 1.08996 * 109.47423 * 59.99718 * 10 9 7 34 34 H 1.09005 * 109.46646 * 299.99553 * 10 9 7 35 35 H 0.96998 * 120.00244 * 335.00527 * 17 15 14 36 36 H 1.08001 * 120.07457 * 0.02562 * 21 20 18 37 37 H 1.08003 * 119.92900 * 180.22844 * 22 21 20 38 38 H 1.07999 * 119.85727 * 179.71653 * 23 22 21 39 39 H 1.08003 * 119.92793 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.07781 * 179.97438 * 25 24 23 41 41 H 1.09004 * 115.55044 * 34.32788 * 26 15 14 42 42 H 1.08997 * 117.50084 * 0.02562 * 27 26 15 43 43 H 1.09003 * 117.49650 * 145.01523 * 27 26 15 44 44 H 1.09000 * 117.49632 * 252.51554 * 28 27 26 45 45 H 1.08989 * 117.49905 * 107.48970 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 7 1.1399 -5.5776 -1.0505 13 7 0.5269 -6.6503 -0.6798 14 6 0.5223 -6.6652 0.6532 15 6 -0.0828 -7.7255 1.5368 16 1 0.2929 -7.6092 2.5534 17 7 0.2824 -9.0505 1.0298 18 6 0.3116 -10.1074 1.8656 19 8 0.0344 -9.9613 3.0401 20 6 0.6796 -11.4448 1.3538 21 6 0.9918 -11.6173 0.0044 22 6 1.3388 -12.8670 -0.4659 23 6 1.3676 -13.9498 0.3948 24 6 1.0546 -13.7866 1.7326 25 6 0.7107 -12.5414 2.2168 26 6 -1.6059 -7.5814 1.5365 27 6 -2.2720 -7.1180 2.8337 28 6 -2.4095 -8.5728 2.3805 29 7 1.1432 -5.5810 1.0485 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8897 33 1 2.8720 -3.6044 0.8894 34 1 2.8719 -3.6043 -0.8906 35 1 0.5034 -9.1673 0.0925 36 1 0.9657 -10.7736 -0.6693 37 1 1.5842 -13.0011 -1.5091 38 1 1.6354 -14.9270 0.0208 39 1 1.0786 -14.6360 2.3992 40 1 0.4662 -12.4153 3.2611 41 1 -2.0464 -7.2474 0.5970 42 1 -1.6250 -6.9154 3.6871 43 1 -3.1507 -6.4788 2.7477 44 1 -3.3788 -8.8907 1.9963 45 1 -1.8531 -9.3277 2.9358 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096410937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:05 Heat of formation + Delta-G solvation = 138.108452 kcal Electronic energy + Delta-G solvation = -28297.734663 eV Core-core repulsion = 24319.103902 eV Total energy + Delta-G solvation = -3978.630761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.01005 -40.60712 -38.88182 -37.26540 -35.50371 -34.53829 -33.24176 -32.81380 -31.59185 -31.28407 -30.38033 -27.82592 -25.87082 -24.15279 -23.21143 -22.86651 -22.57528 -22.26110 -21.29704 -20.93631 -20.23873 -18.55320 -17.47245 -16.84424 -16.50248 -16.39360 -16.08592 -15.65789 -15.31383 -15.22982 -14.76776 -14.63167 -14.08476 -13.97167 -13.87795 -13.68864 -13.58106 -12.91702 -12.80830 -12.64801 -12.24000 -12.02406 -11.84763 -11.66242 -11.46189 -11.40292 -11.12799 -11.05252 -10.68565 -10.62266 -10.53586 -10.41073 -10.38650 -10.15206 -10.05691 -9.57442 -9.48815 -9.38979 -9.35216 -9.19931 -8.60981 -6.24938 -4.32263 0.50958 0.99837 1.64315 2.22037 2.39955 2.58628 2.94286 3.19980 3.27027 3.29209 3.54551 3.72877 4.04276 4.27330 4.36850 4.46415 4.56740 4.58237 4.76022 4.77635 4.94777 4.99862 5.05627 5.09043 5.12076 5.16089 5.41909 5.46480 5.60571 5.68342 5.72269 5.73668 5.80170 5.91914 5.95405 6.02230 6.06440 6.06798 6.11496 6.15791 6.17237 6.32142 6.50311 6.54364 7.26226 7.28249 7.28774 7.67763 7.95199 7.98117 8.70490 8.71990 9.34001 10.86190 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020003 B = 0.002129 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.449327 B =13148.908938 C =13981.734770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.532 4.532 8 H 0.064 0.936 9 C 0.014 3.986 10 C 0.122 3.878 11 N -0.108 5.108 12 N -0.061 5.061 13 N -0.296 5.296 14 C 0.138 3.862 15 C 0.287 3.713 16 H 0.116 0.884 17 N -0.711 5.711 18 C 0.565 3.435 19 O -0.532 6.532 20 C -0.132 4.132 21 C -0.084 4.084 22 C -0.127 4.127 23 C -0.095 4.095 24 C -0.130 4.130 25 C -0.059 4.059 26 C -0.169 4.169 27 C -0.163 4.163 28 C -0.175 4.175 29 N -0.289 5.289 30 H 0.266 0.734 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.407 0.593 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.137 0.863 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.640 -25.924 1.680 25.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.570 4.570 8 H 0.082 0.918 9 C -0.025 4.025 10 C 0.005 3.995 11 N -0.022 5.022 12 N -0.053 5.053 13 N -0.167 5.167 14 C -0.146 4.146 15 C 0.180 3.820 16 H 0.133 0.867 17 N -0.363 5.363 18 C 0.353 3.647 19 O -0.410 6.410 20 C -0.135 4.135 21 C -0.103 4.103 22 C -0.145 4.145 23 C -0.114 4.114 24 C -0.148 4.148 25 C -0.078 4.078 26 C -0.190 4.190 27 C -0.201 4.201 28 C -0.212 4.212 29 N -0.140 5.140 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.244 0.756 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.155 0.845 41 H 0.128 0.872 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.108 0.892 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.509 -25.328 1.939 25.407 hybrid contribution 0.340 0.924 -0.267 1.020 sum 0.849 -24.404 1.671 24.476 Atomic orbital electron populations 1.69963 1.06226 1.27354 1.48828 1.25003 0.94924 0.99619 0.94479 0.86422 0.79711 0.82572 0.78322 1.20376 1.21003 1.19600 1.20859 0.93155 0.89610 1.53398 0.91787 1.19516 0.93914 0.89801 0.99245 1.23107 0.95724 0.75428 1.05245 1.50808 1.33134 1.18578 0.99731 1.78921 1.10962 1.00560 1.14841 1.75636 1.17247 1.13315 1.10523 1.25113 1.02168 0.96337 0.90942 1.18263 0.91601 0.76803 0.95371 0.86668 1.45842 1.69860 1.07188 1.13370 1.18217 0.76800 0.84025 0.85674 1.90718 1.48701 1.85188 1.16394 1.19910 1.05474 0.93590 0.94567 1.21409 0.96537 0.98050 0.94317 1.21141 1.00569 0.92507 1.00309 1.21403 0.97279 0.99024 0.93659 1.21178 1.00451 0.97286 0.95877 1.21305 0.95047 0.91265 1.00176 1.22512 0.92209 1.07072 0.97184 1.22969 1.02728 0.97511 0.96892 1.23283 1.01129 0.93842 1.02987 1.74639 1.16234 1.06687 1.16469 0.92464 0.95112 0.95075 0.87490 0.87307 0.75612 0.85389 0.85276 0.85580 0.85295 0.84509 0.87186 0.88249 0.88540 0.89162 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.36 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.53 -13.69 9.11 -34.44 -0.31 -14.01 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 10 C 0.12 2.30 6.54 -4.04 -0.03 2.27 16 11 N -0.11 -2.07 4.00 -10.67 -0.04 -2.11 16 12 N -0.06 -1.16 13.25 60.35 0.80 -0.36 16 13 N -0.30 -5.17 12.24 32.44 0.40 -4.77 16 14 C 0.14 2.29 7.12 -156.63 -1.12 1.18 16 15 C 0.29 3.99 2.81 -69.08 -0.19 3.80 16 16 H 0.12 1.69 7.33 -51.93 -0.38 1.31 16 17 N -0.71 -8.43 5.00 -55.88 -0.28 -8.71 16 18 C 0.56 6.81 7.10 -12.33 -0.09 6.72 16 19 O -0.53 -7.62 13.37 5.32 0.07 -7.55 16 20 C -0.13 -1.32 5.87 -104.97 -0.62 -1.94 16 21 C -0.08 -0.70 9.54 -39.19 -0.37 -1.07 16 22 C -0.13 -0.87 10.03 -39.64 -0.40 -1.27 16 23 C -0.10 -0.60 10.04 -39.49 -0.40 -1.00 16 24 C -0.13 -0.90 10.03 -39.64 -0.40 -1.30 16 25 C -0.06 -0.53 9.60 -39.18 -0.38 -0.91 16 26 C -0.17 -2.24 5.35 -90.62 -0.48 -2.72 16 27 C -0.16 -2.03 10.18 -26.73 -0.27 -2.30 16 28 C -0.18 -2.09 9.73 -26.73 -0.26 -2.35 16 29 N -0.29 -5.39 12.13 32.46 0.39 -4.99 16 30 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.11 1.84 8.14 -51.93 -0.42 1.41 16 34 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 35 H 0.41 4.34 6.41 -40.82 -0.26 4.08 16 36 H 0.13 0.91 6.41 -52.49 -0.34 0.57 16 37 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 39 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 40 H 0.14 1.21 7.65 -52.49 -0.40 0.81 16 41 H 0.11 1.53 8.11 -51.93 -0.42 1.11 16 42 H 0.10 1.23 8.05 -51.93 -0.42 0.82 16 43 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.12 1.54 5.01 -51.94 -0.26 1.28 16 LS Contribution 386.01 15.07 5.82 5.82 Total: -1.00 -30.72 386.01 -8.51 -39.23 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.83 Total: 5.87 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -5.56 Total: -13.10 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: 2.01 Total: -45.60 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.07 Total: -7.55 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.72 -8.51 -39.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096410937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.337 kcal (2) G-P(sol) polarization free energy of solvation -30.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds