Wall clock time and date at job start Tue Mar 31 2020 06:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99878 * 2 1 4 4 H 1.48502 * 109.47191 * 269.99939 * 3 2 1 5 5 H 1.48502 * 109.47292 * 29.99442 * 3 2 1 6 6 H 1.48496 * 109.47410 * 149.99425 * 3 2 1 7 7 C 1.37873 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99506 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00511 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47454 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47160 * 179.97438 * 10 9 7 12 12 N 1.28776 * 125.45117 * 270.02462 * 11 10 9 13 13 N 1.28993 * 108.72767 * 179.97438 * 12 11 10 14 14 C 1.33322 * 107.35636 * 0.02562 * 13 12 11 15 15 C 1.50700 * 126.55093 * 180.02562 * 14 13 12 16 16 H 1.08998 * 109.46929 * 194.97229 * 15 14 13 17 17 N 1.46494 * 109.47102 * 314.98034 * 15 14 13 18 18 C 1.34779 * 119.99946 * 204.99873 * 17 15 14 19 19 O 1.21560 * 119.99917 * 359.97438 * 18 17 15 20 20 C 1.47842 * 120.00426 * 180.02562 * 18 17 15 21 21 C 1.39579 * 120.14279 * 359.71802 * 20 18 17 22 22 C 1.37963 * 119.85201 * 179.78955 * 21 20 18 23 23 C 1.38357 * 120.14547 * 0.49464 * 22 21 20 24 24 C 1.38365 * 120.29253 * 359.73903 * 23 22 21 25 25 C 1.37959 * 120.14481 * 0.02562 * 24 23 22 26 26 C 1.53005 * 109.46639 * 74.97782 * 15 14 13 27 27 C 1.52997 * 117.49713 * 248.61677 * 26 15 14 28 28 C 1.53003 * 60.00338 * 252.51390 * 27 26 15 29 29 N 1.28884 * 125.44630 * 90.00358 * 11 10 9 30 30 H 0.97006 * 120.00107 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46722 * 59.99620 * 9 7 2 32 32 H 1.09003 * 109.47008 * 300.00347 * 9 7 2 33 33 H 1.09003 * 109.47165 * 60.00260 * 10 9 7 34 34 H 1.08998 * 109.47162 * 300.00195 * 10 9 7 35 35 H 0.97004 * 120.00734 * 24.99919 * 17 15 14 36 36 H 1.07997 * 120.06979 * 0.02562 * 21 20 18 37 37 H 1.07999 * 119.92174 * 180.23581 * 22 21 20 38 38 H 1.07990 * 119.85623 * 179.72037 * 23 22 21 39 39 H 1.07990 * 119.92952 * 180.02562 * 24 23 22 40 40 H 1.07997 * 120.07599 * 179.97438 * 25 24 23 41 41 H 1.08995 * 115.55070 * 34.33264 * 26 15 14 42 42 H 1.08995 * 117.50177 * 0.02562 * 27 26 15 43 43 H 1.08998 * 117.49940 * 145.02469 * 27 26 15 44 44 H 1.08993 * 117.50194 * 252.51349 * 28 27 26 45 45 H 1.09001 * 117.51314 * 107.47710 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 7 1.1394 -5.5771 1.0505 13 7 0.5213 -6.6469 0.6798 14 6 0.5141 -6.6604 -0.6533 15 6 -0.0969 -7.7173 -1.5368 16 1 0.2774 -7.6014 -2.5540 17 7 0.2638 -9.0443 -1.0318 18 6 0.2870 -10.1005 -1.8687 19 8 0.0082 -9.9520 -3.0426 20 6 0.6504 -11.4398 -1.3590 21 6 0.9757 -11.6129 -0.0128 22 6 1.3097 -12.8662 0.4574 23 6 1.3326 -13.9483 -0.4045 24 6 1.0159 -13.7827 -1.7412 25 6 0.6755 -12.5356 -2.2232 26 6 -1.6196 -7.5668 -1.5335 27 6 -2.4365 -8.6658 -0.8511 28 6 -2.4288 -8.5541 -2.3771 29 7 1.1388 -5.5784 -1.0485 30 1 -0.4850 0.8401 -0.0004 31 1 0.6248 -2.5570 -0.8897 32 1 0.6241 -2.5567 0.8903 33 1 2.8720 -3.6043 0.8906 34 1 2.8720 -3.6042 -0.8894 35 1 0.4859 -9.1629 -0.0950 36 1 0.9623 -10.7683 0.6601 37 1 1.5579 -13.0021 1.4996 38 1 1.5991 -14.9264 -0.0324 39 1 1.0353 -14.6314 -2.4086 40 1 0.4289 -12.4076 -3.2668 41 1 -1.9908 -6.5446 -1.4609 42 1 -1.8893 -9.4958 -0.4042 43 1 -3.3455 -8.3667 -0.3292 44 1 -3.3326 -8.1814 -2.8590 45 1 -1.8764 -9.3105 -2.9346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096410938.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:09 Heat of formation + Delta-G solvation = 142.581067 kcal Electronic energy + Delta-G solvation = -28419.502728 eV Core-core repulsion = 24441.065914 eV Total energy + Delta-G solvation = -3978.436814 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.00555 -40.74766 -38.96447 -37.24037 -35.45751 -34.35162 -33.24003 -32.86299 -31.58793 -31.29958 -30.39647 -27.95372 -25.88637 -24.19900 -23.18076 -22.88252 -22.71780 -22.25141 -21.24868 -20.99310 -20.01840 -18.57671 -17.50101 -16.86768 -16.55273 -16.42958 -16.23743 -15.79795 -15.35288 -14.89573 -14.71585 -14.63250 -14.16967 -14.01886 -13.87406 -13.72700 -13.47904 -13.07995 -12.81539 -12.65224 -12.19811 -12.02678 -11.87240 -11.70685 -11.50751 -11.47690 -11.14161 -11.04059 -10.68249 -10.63625 -10.57309 -10.40950 -10.22644 -10.17785 -10.02513 -9.57525 -9.48476 -9.40450 -9.36793 -9.23606 -8.61083 -6.25107 -4.32432 0.48784 0.98121 1.64595 2.23291 2.40044 2.56867 2.93329 3.20001 3.27025 3.29116 3.52778 3.73744 3.97257 4.27206 4.33430 4.44540 4.55207 4.60873 4.74309 4.74898 4.96108 4.98313 5.01004 5.09492 5.11909 5.28869 5.36093 5.42912 5.59041 5.66918 5.70045 5.72774 5.82317 5.87540 5.93231 6.00417 6.05319 6.06407 6.07404 6.16034 6.22135 6.26911 6.48508 6.54613 7.22365 7.28029 7.28313 7.67586 7.91934 7.97967 8.71256 8.71911 9.33856 10.86018 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021464 B = 0.002103 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.169331 B =13312.020141 C =13917.309862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.531 4.531 8 H 0.064 0.936 9 C 0.014 3.986 10 C 0.122 3.878 11 N -0.109 5.109 12 N -0.061 5.061 13 N -0.293 5.293 14 C 0.137 3.863 15 C 0.287 3.713 16 H 0.120 0.880 17 N -0.713 5.713 18 C 0.563 3.437 19 O -0.528 6.528 20 C -0.133 4.133 21 C -0.085 4.085 22 C -0.127 4.127 23 C -0.095 4.095 24 C -0.130 4.130 25 C -0.059 4.059 26 C -0.165 4.165 27 C -0.168 4.168 28 C -0.177 4.177 29 N -0.291 5.291 30 H 0.266 0.734 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.408 0.592 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.137 0.863 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.607 -26.403 -1.109 26.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.570 4.570 8 H 0.082 0.918 9 C -0.025 4.025 10 C 0.005 3.995 11 N -0.023 5.023 12 N -0.054 5.054 13 N -0.164 5.164 14 C -0.147 4.147 15 C 0.179 3.821 16 H 0.138 0.862 17 N -0.366 5.366 18 C 0.351 3.649 19 O -0.406 6.406 20 C -0.136 4.136 21 C -0.104 4.104 22 C -0.145 4.145 23 C -0.113 4.113 24 C -0.148 4.148 25 C -0.078 4.078 26 C -0.185 4.185 27 C -0.205 4.205 28 C -0.214 4.214 29 N -0.142 5.142 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.245 0.755 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.155 0.845 41 H 0.132 0.868 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.475 -25.806 -1.365 25.847 hybrid contribution 0.352 0.964 0.196 1.045 sum 0.827 -24.842 -1.169 24.883 Atomic orbital electron populations 1.69967 1.06225 1.27354 1.48843 1.25005 0.94929 0.99628 0.94477 0.86418 0.79700 0.82558 0.78328 1.20380 1.21003 1.19598 1.20859 0.93160 0.89611 1.53383 0.91783 1.19515 0.93921 0.89818 0.99229 1.23103 0.95726 0.75422 1.05245 1.50806 1.33111 1.18625 0.99741 1.78927 1.10913 1.00679 1.14846 1.75651 1.16901 1.13291 1.10518 1.25134 1.02137 0.96395 0.90998 1.18228 0.91789 0.76631 0.95413 0.86248 1.45880 1.70030 1.07221 1.13445 1.18249 0.76883 0.84094 0.85678 1.90733 1.48289 1.85215 1.16345 1.19907 1.05554 0.93557 0.94627 1.21407 0.96603 0.98033 0.94326 1.21141 1.00589 0.92455 1.00300 1.21407 0.97196 0.99062 0.93645 1.21182 1.00404 0.97265 0.95901 1.21307 0.95017 0.91277 1.00149 1.22549 0.91299 0.97144 1.07521 1.22909 1.01577 1.00462 0.95566 1.23360 1.01843 1.02407 0.93778 1.74648 1.16177 1.06881 1.16503 0.92466 0.95107 0.95104 0.87309 0.87499 0.75489 0.85414 0.85260 0.85560 0.85274 0.84499 0.86798 0.88815 0.88877 0.88929 0.86435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.53 -13.69 9.11 -34.44 -0.31 -14.01 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.01 0.33 5.30 -27.89 -0.15 0.19 16 10 C 0.12 2.30 6.54 -4.04 -0.03 2.27 16 11 N -0.11 -2.07 4.00 -10.67 -0.04 -2.11 16 12 N -0.06 -1.17 13.25 60.35 0.80 -0.37 16 13 N -0.29 -5.08 12.24 32.45 0.40 -4.69 16 14 C 0.14 2.25 7.12 -156.62 -1.12 1.14 16 15 C 0.29 3.94 2.98 -69.08 -0.21 3.74 16 16 H 0.12 1.73 7.58 -51.93 -0.39 1.34 16 17 N -0.71 -8.25 3.56 -55.88 -0.20 -8.45 16 18 C 0.56 6.65 6.61 -12.33 -0.08 6.56 16 19 O -0.53 -7.51 13.37 5.31 0.07 -7.44 16 20 C -0.13 -1.30 5.87 -104.97 -0.62 -1.92 16 21 C -0.08 -0.68 9.54 -39.18 -0.37 -1.06 16 22 C -0.13 -0.85 10.03 -39.64 -0.40 -1.25 16 23 C -0.09 -0.59 10.04 -39.49 -0.40 -0.98 16 24 C -0.13 -0.88 10.03 -39.64 -0.40 -1.28 16 25 C -0.06 -0.52 9.60 -39.18 -0.38 -0.89 16 26 C -0.16 -2.16 5.69 -90.61 -0.52 -2.68 16 27 C -0.17 -1.92 9.73 -26.73 -0.26 -2.18 16 28 C -0.18 -2.11 9.82 -26.73 -0.26 -2.37 16 29 N -0.29 -5.39 12.13 32.47 0.39 -5.00 16 30 H 0.27 7.18 8.31 -40.82 -0.34 6.85 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 34 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 35 H 0.41 4.26 6.41 -40.82 -0.26 4.00 16 36 H 0.13 0.88 6.41 -52.49 -0.34 0.54 16 37 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 39 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.14 1.20 7.65 -52.49 -0.40 0.80 16 41 H 0.11 1.62 8.11 -51.93 -0.42 1.20 16 42 H 0.09 1.02 6.67 -51.93 -0.35 0.68 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.12 1.53 5.01 -51.93 -0.26 1.27 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -30.68 383.08 -8.44 -39.13 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.77 Total: 5.59 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -5.58 Total: -13.11 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 2.09 Total: -45.28 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.07 Total: -7.44 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.68 -8.44 -39.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096410938.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.708 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds