Wall clock time and date at job start Tue Mar 31 2020 06:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00313 * 2 1 4 4 H 1.48501 * 109.47116 * 270.00349 * 3 2 1 5 5 H 1.48506 * 109.46606 * 30.00170 * 3 2 1 6 6 H 1.48496 * 109.47204 * 150.00184 * 3 2 1 7 7 C 1.37881 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00377 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99900 * 179.97438 * 7 2 1 10 10 N 1.46892 * 109.47160 * 178.95418 * 9 7 2 11 11 C 1.46901 * 111.00189 * 201.68507 * 10 9 7 12 12 C 1.52997 * 109.47294 * 162.67758 * 11 10 9 13 13 H 1.09001 * 109.46672 * 306.66748 * 12 11 10 14 14 O 1.42893 * 109.47427 * 66.67043 * 12 11 10 15 15 C 1.50700 * 109.47032 * 186.67293 * 12 11 10 16 16 C 1.38254 * 119.96876 * 99.99741 * 15 12 11 17 17 C 1.38217 * 120.07430 * 179.97438 * 16 15 12 18 18 C 1.38406 * 119.99717 * 0.02562 * 17 16 15 19 19 F 1.35105 * 120.03481 * 179.97438 * 18 17 16 20 20 C 1.38649 * 119.93088 * 359.97397 * 18 17 16 21 21 F 1.35100 * 120.03585 * 180.02562 * 20 18 17 22 22 C 1.38218 * 119.96239 * 279.97313 * 15 12 11 23 23 C 1.46904 * 111.00221 * 77.73254 * 10 9 7 24 24 C 1.53176 * 109.54284 * 60.99326 * 23 10 9 25 25 C 1.53095 * 109.16134 * 183.15682 * 24 23 10 26 26 O 1.42898 * 109.41668 * 57.60775 * 25 24 23 27 27 C 1.42898 * 114.09935 * 298.84073 * 26 25 24 28 28 C 1.53095 * 109.41405 * 61.16009 * 27 26 25 29 29 H 0.97002 * 119.99719 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47077 * 58.94973 * 9 7 2 31 31 H 1.09001 * 109.46640 * 298.95742 * 9 7 2 32 32 H 1.09000 * 109.46723 * 42.67324 * 11 10 9 33 33 H 1.09004 * 109.47168 * 282.67547 * 11 10 9 34 34 H 0.96698 * 114.00049 * 60.00242 * 14 12 11 35 35 H 1.08000 * 119.96360 * 0.02562 * 16 15 12 36 36 H 1.07995 * 120.00074 * 179.72598 * 17 16 15 37 37 H 1.07998 * 119.99758 * 0.02562 * 22 15 12 38 38 H 1.08996 * 109.54204 * 181.26205 * 23 10 9 39 39 H 1.09003 * 109.52105 * 303.06217 * 24 23 10 40 40 H 1.08998 * 109.52497 * 63.24868 * 24 23 10 41 41 H 1.08997 * 109.47531 * 297.62138 * 25 24 23 42 42 H 1.09004 * 109.47948 * 177.59396 * 25 24 23 43 43 H 1.08996 * 109.48169 * 301.17537 * 27 26 25 44 44 H 1.09003 * 109.49305 * 181.14191 * 27 26 25 45 45 H 1.08999 * 109.52472 * 182.48832 * 28 27 26 46 46 H 1.08996 * 109.52385 * 62.29771 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 4.0012 -2.5789 0.0237 11 6 5.3783 -2.6413 0.5311 12 6 5.7031 -4.0767 0.9496 13 1 4.9428 -4.4333 1.6445 14 8 5.7236 -4.9168 -0.2061 15 6 7.0523 -4.1114 1.6199 16 6 7.1374 -4.1443 2.9995 17 6 8.3737 -4.1767 3.6166 18 6 9.5283 -4.1757 2.8533 19 9 10.7372 -4.2069 3.4558 20 6 9.4430 -4.1428 1.4699 21 9 10.5687 -4.1423 0.7228 22 6 8.2034 -4.1109 0.8549 23 6 3.9014 -3.1965 -1.3055 24 6 4.7614 -2.4118 -2.3010 25 6 4.5895 -3.0144 -3.6978 26 8 3.2075 -2.9866 -4.0603 27 6 2.3612 -3.7428 -3.1921 28 6 2.4435 -3.1694 -1.7749 29 1 -0.4850 0.8401 0.0004 30 1 3.8752 -0.6643 0.8793 31 1 3.8745 -0.6964 -0.9004 32 1 5.4786 -1.9803 1.3919 33 1 6.0685 -2.3261 -0.2515 34 1 6.3783 -4.6578 -0.8690 35 1 6.2368 -4.1454 3.5956 36 1 8.4389 -4.1978 4.6944 37 1 8.1356 -4.0852 -0.2226 38 1 4.2492 -4.2282 -1.2552 39 1 4.4449 -1.3688 -2.3127 40 1 5.8086 -2.4722 -2.0045 41 1 4.9440 -4.0451 -3.6950 42 1 5.1660 -2.4335 -4.4178 43 1 2.6865 -4.7831 -3.1828 44 1 1.3323 -3.6868 -3.5475 45 1 1.8331 -3.7718 -1.1022 46 1 2.0802 -2.1418 -1.7761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096421154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:50 Heat of formation + Delta-G solvation = -140.234320 kcal Electronic energy + Delta-G solvation = -30977.404287 eV Core-core repulsion = 26503.721739 eV Total energy + Delta-G solvation = -4473.682547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.73363 -48.81080 -40.15093 -39.17572 -37.33592 -35.86797 -32.61504 -32.08133 -31.20753 -30.83091 -30.62553 -28.70186 -26.57167 -24.31833 -23.54585 -23.09644 -22.91700 -21.43184 -20.99714 -18.90054 -18.45725 -17.63507 -17.40293 -16.98578 -16.57168 -16.34127 -16.04653 -15.45265 -15.32750 -15.22506 -14.96152 -14.79548 -14.49365 -14.29233 -14.19879 -14.10527 -13.86213 -13.34375 -13.15365 -12.95225 -12.78177 -12.51335 -12.30784 -11.95510 -11.71689 -11.58693 -11.33462 -11.23273 -11.02341 -10.93614 -10.74741 -10.58564 -10.22944 -9.94211 -9.92371 -9.43473 -9.39426 -9.24344 -8.90649 -8.84857 -8.52784 -7.41613 -6.07881 -4.01110 0.56567 0.65555 2.99501 3.24670 3.32029 3.33668 3.45280 3.99000 4.12020 4.21604 4.29963 4.32804 4.38445 4.61901 4.73472 4.82571 5.13998 5.18016 5.20740 5.25867 5.38123 5.38708 5.44151 5.47422 5.54089 5.62373 5.67650 5.76561 5.80142 5.88601 5.94219 6.06359 6.09764 6.19364 6.22621 6.39040 6.40598 6.61191 6.73833 6.82064 7.02136 7.46154 7.50964 7.59001 7.66059 7.82592 7.99282 8.61823 9.02270 9.52954 11.03997 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011953 B = 0.003438 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.913271 B = 8143.333078 C = 9439.610091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.069 3.931 3 Si 0.868 3.132 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.503 4.503 8 H 0.092 0.908 9 C 0.153 3.847 10 N -0.511 5.511 11 C 0.022 3.978 12 C 0.153 3.847 13 H 0.125 0.875 14 O -0.542 6.542 15 C -0.088 4.088 16 C -0.087 4.087 17 C -0.122 4.122 18 C 0.061 3.939 19 F -0.131 7.131 20 C 0.070 3.930 21 F -0.130 7.130 22 C -0.120 4.120 23 C 0.083 3.917 24 C -0.194 4.194 25 C 0.071 3.929 26 O -0.386 6.386 27 C 0.061 3.939 28 C -0.159 4.159 29 H 0.263 0.737 30 H 0.022 0.978 31 H -0.005 1.005 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.366 0.634 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.043 0.957 42 H 0.081 0.919 43 H 0.036 0.964 44 H 0.088 0.912 45 H 0.071 0.929 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.254 -9.452 1.897 18.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.695 3.305 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.541 4.541 8 H 0.110 0.890 9 C 0.027 3.973 10 N -0.233 5.233 11 C -0.107 4.107 12 C 0.094 3.906 13 H 0.142 0.858 14 O -0.347 6.347 15 C -0.089 4.089 16 C -0.105 4.105 17 C -0.141 4.141 18 C 0.041 3.959 19 F -0.109 7.109 20 C 0.050 3.950 21 F -0.108 7.108 22 C -0.139 4.139 23 C -0.025 4.025 24 C -0.233 4.233 25 C -0.006 4.006 26 O -0.305 6.305 27 C -0.016 4.016 28 C -0.196 4.196 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.012 0.988 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.214 0.786 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.160 0.840 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.106 0.894 45 H 0.090 0.910 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 15.322 -9.785 2.406 18.339 hybrid contribution 2.104 1.751 -0.494 2.781 sum 17.426 -8.034 1.911 19.284 Atomic orbital electron populations 1.69872 1.06004 1.26774 1.50912 1.24879 0.94673 0.98535 0.95181 0.86978 0.80325 0.84650 0.78498 1.20337 1.21236 1.19468 1.21162 0.88640 0.94931 1.49344 0.89035 1.20367 0.97497 0.84191 0.95237 1.62174 1.16354 1.21187 1.23592 1.22818 0.92382 0.95340 1.00191 1.21037 0.91141 0.91288 0.87178 0.85779 1.86678 1.61489 1.56279 1.30285 1.20692 0.96220 0.97757 0.94225 1.21046 0.97704 0.97862 0.93889 1.21117 0.90507 1.01377 1.01062 1.17713 0.81763 1.07115 0.89299 1.91528 1.42043 1.94044 1.83332 1.17607 0.83412 1.06549 0.87448 1.91534 1.49316 1.94028 1.75943 1.20801 0.89778 1.02025 1.01319 1.21973 0.95752 0.98533 0.86283 1.22938 1.00177 1.03109 0.97114 1.22370 0.83463 0.99176 0.95639 1.87883 1.17270 1.72963 1.52410 1.22711 0.94258 0.93208 0.91397 1.22819 0.96125 1.06926 0.93716 0.92667 0.95978 0.98764 0.90222 0.94709 0.78622 0.83572 0.83471 0.83996 0.88496 0.90274 0.92403 0.93914 0.90079 0.94542 0.89361 0.91015 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.22 13.96 55.43 0.77 -25.44 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.87 20.71 27.49 -169.99 -4.67 16.04 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.18 6.51 56.52 0.37 -5.81 16 7 C -0.50 -13.05 7.01 -34.44 -0.24 -13.29 16 8 H 0.09 2.57 6.16 -52.49 -0.32 2.24 16 9 C 0.15 3.36 3.52 -4.98 -0.02 3.34 16 10 N -0.51 -9.21 4.46 -227.86 -1.02 -10.23 16 11 C 0.02 0.30 4.63 -3.83 -0.02 0.29 16 12 C 0.15 1.74 3.40 -27.88 -0.09 1.65 16 13 H 0.12 1.51 8.00 -51.93 -0.42 1.09 16 14 O -0.54 -6.18 10.18 -35.23 -0.36 -6.54 16 15 C -0.09 -0.86 4.97 -104.62 -0.52 -1.38 16 16 C -0.09 -0.76 9.66 -39.58 -0.38 -1.14 16 17 C -0.12 -1.04 10.02 -39.53 -0.40 -1.44 16 18 C 0.06 0.64 7.31 -39.37 -0.29 0.35 16 19 F -0.13 -1.49 17.18 2.25 0.04 -1.45 16 20 C 0.07 0.75 7.31 -39.37 -0.29 0.46 16 21 F -0.13 -1.52 17.18 2.25 0.04 -1.48 16 22 C -0.12 -1.15 9.30 -39.52 -0.37 -1.52 16 23 C 0.08 1.38 2.06 -67.53 -0.14 1.24 16 24 C -0.19 -2.97 4.82 -26.59 -0.13 -3.10 16 25 C 0.07 1.01 6.84 37.21 0.25 1.26 16 26 O -0.39 -6.71 10.76 -35.23 -0.38 -7.09 16 27 C 0.06 1.01 6.84 37.21 0.25 1.27 16 28 C -0.16 -3.02 4.03 -26.59 -0.11 -3.13 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.02 0.50 6.57 -51.93 -0.34 0.16 16 31 H -0.01 -0.12 5.07 -51.93 -0.26 -0.38 16 32 H 0.08 1.14 7.63 -51.93 -0.40 0.74 16 33 H 0.03 0.46 5.91 -51.93 -0.31 0.15 16 34 H 0.37 3.14 7.50 45.56 0.34 3.48 16 35 H 0.15 1.02 8.03 -52.49 -0.42 0.60 16 36 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.14 1.09 6.78 -52.49 -0.36 0.74 16 38 H 0.10 1.51 5.25 -51.93 -0.27 1.23 16 39 H 0.08 1.45 5.97 -51.93 -0.31 1.14 16 40 H 0.06 0.74 6.38 -51.93 -0.33 0.41 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.07 1.43 7.59 -51.93 -0.39 1.03 16 46 H 0.12 2.91 5.05 -51.93 -0.26 2.64 16 LS Contribution 359.97 15.07 5.42 5.42 Total: -1.00 -29.99 359.97 -8.06 -38.05 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.33 Total: 6.06 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -2.58 Total: -13.34 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.24 Total: -35.67 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.74 Total: -13.63 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.99 -8.06 -38.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096421154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.181 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds