Wall clock time and date at job start Tue Mar 31 2020 06:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99838 * 2 1 4 4 H 1.48503 * 109.47373 * 270.00113 * 3 2 1 5 5 H 1.48498 * 109.47096 * 30.00488 * 3 2 1 6 6 H 1.48503 * 109.47142 * 150.00218 * 3 2 1 7 7 C 1.37876 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00584 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99626 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.46912 * 176.58364 * 9 7 2 11 11 C 1.46903 * 111.00262 * 161.88857 * 10 9 7 12 12 C 1.52992 * 109.47456 * 203.80227 * 11 10 9 13 13 H 1.09005 * 109.47511 * 53.22941 * 12 11 10 14 14 O 1.42898 * 109.47267 * 293.23167 * 12 11 10 15 15 C 1.50700 * 109.47337 * 173.22835 * 12 11 10 16 16 C 1.38257 * 119.96306 * 84.72718 * 15 12 11 17 17 C 1.38214 * 120.07043 * 179.72957 * 16 15 12 18 18 C 1.38415 * 119.99908 * 0.54364 * 17 16 15 19 19 F 1.35097 * 120.03527 * 179.75345 * 18 17 16 20 20 C 1.38651 * 119.92928 * 359.72632 * 18 17 16 21 21 F 1.35096 * 120.03836 * 180.02562 * 20 18 17 22 22 C 1.38211 * 119.96558 * 264.99780 * 15 12 11 23 23 C 1.46903 * 111.00077 * 285.83998 * 10 9 7 24 24 C 1.53182 * 109.54155 * 69.30898 * 23 10 9 25 25 C 1.53092 * 109.15977 * 183.15133 * 24 23 10 26 26 O 1.42898 * 109.41576 * 57.61231 * 25 24 23 27 27 C 1.42904 * 114.09484 * 298.83825 * 26 25 24 28 28 C 1.53088 * 109.41462 * 61.16024 * 27 26 25 29 29 H 0.97003 * 120.00244 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47260 * 56.58789 * 9 7 2 31 31 H 1.08996 * 109.47223 * 296.58270 * 9 7 2 32 32 H 1.09003 * 109.46727 * 323.80360 * 11 10 9 33 33 H 1.08994 * 109.47465 * 83.79673 * 11 10 9 34 34 H 0.96701 * 113.99607 * 294.10725 * 14 12 11 35 35 H 1.08003 * 119.96675 * 0.02562 * 16 15 12 36 36 H 1.08002 * 120.00346 * 180.27508 * 17 16 15 37 37 H 1.08003 * 120.00318 * 0.02562 * 22 15 12 38 38 H 1.08998 * 109.54272 * 189.57488 * 23 10 9 39 39 H 1.08994 * 109.52191 * 303.06119 * 24 23 10 40 40 H 1.09006 * 109.51713 * 63.24708 * 24 23 10 41 41 H 1.09000 * 109.48141 * 297.62474 * 25 24 23 42 42 H 1.09003 * 109.47642 * 177.59692 * 25 24 23 43 43 H 1.08999 * 109.48233 * 301.17268 * 27 26 25 44 44 H 1.08998 * 109.48718 * 181.14567 * 27 26 25 45 45 H 1.09008 * 109.52296 * 182.48382 * 28 27 26 46 46 H 1.08998 * 109.52547 * 62.29532 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0013 -2.5765 0.0809 11 6 5.4056 -2.6636 -0.3415 12 6 5.7092 -4.0873 -0.8122 13 1 4.9831 -4.3822 -1.5698 14 8 5.6297 -4.9832 0.2981 15 6 7.0962 -4.1371 -1.3996 16 6 8.1903 -4.3129 -0.5729 17 6 9.4628 -4.3645 -1.1098 18 6 9.6438 -4.2289 -2.4754 19 9 10.8877 -4.2743 -3.0004 20 6 8.5470 -4.0470 -3.3038 21 9 8.7211 -3.9149 -4.6370 22 6 7.2735 -4.0014 -2.7636 23 6 3.8244 -3.1182 1.4349 24 6 2.3319 -3.3194 1.7153 25 6 2.1527 -3.8092 3.1547 26 8 2.7341 -2.8632 4.0542 27 6 4.1379 -2.6696 3.8700 28 6 4.3970 -2.1340 2.4594 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6283 0.8567 31 1 3.8745 -0.7339 -0.9201 32 1 5.5829 -1.9649 -1.1592 33 1 6.0538 -2.4124 0.4979 34 1 6.3082 -4.8364 0.9713 35 1 8.0501 -4.4148 0.4932 36 1 10.3164 -4.5063 -0.4634 37 1 6.4184 -3.8593 -3.4078 38 1 4.3440 -4.0729 1.5164 39 1 1.8060 -2.3738 1.5841 40 1 1.9284 -4.0605 1.0254 41 1 2.6447 -4.7744 3.2741 42 1 1.0899 -3.9132 3.3735 43 1 4.6560 -3.6199 3.9989 44 1 4.5055 -1.9527 4.6042 45 1 5.4703 -2.0274 2.3017 46 1 3.9127 -1.1645 2.3433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096421155.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:53 Heat of formation + Delta-G solvation = -137.623708 kcal Electronic energy + Delta-G solvation = -30861.898403 eV Core-core repulsion = 26388.329060 eV Total energy + Delta-G solvation = -4473.569343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.72149 -48.79734 -40.11095 -39.15687 -37.28724 -35.88613 -32.60418 -32.19359 -31.18478 -30.71835 -30.55646 -28.73543 -26.58249 -24.18497 -23.63768 -23.15635 -22.93540 -21.39047 -20.91113 -18.91819 -18.47687 -17.52666 -17.45479 -17.00318 -16.56157 -16.39515 -16.03632 -15.45716 -15.32605 -15.20976 -14.80435 -14.76896 -14.64286 -14.24927 -14.16735 -14.07968 -13.72458 -13.39588 -13.11011 -13.01265 -12.69751 -12.49900 -12.32697 -11.92907 -11.81236 -11.52867 -11.36347 -11.16973 -11.03625 -10.94397 -10.62017 -10.49438 -10.24277 -10.02083 -9.87752 -9.48348 -9.37570 -9.22458 -8.91363 -8.78684 -8.47671 -7.38729 -6.07702 -4.02037 0.55274 0.65623 2.98465 3.24378 3.31947 3.33658 3.45635 3.97898 4.10224 4.22480 4.32821 4.34569 4.38449 4.64217 4.75623 4.78651 5.15180 5.20951 5.23658 5.30847 5.37712 5.44808 5.47200 5.48867 5.53118 5.63022 5.65849 5.76892 5.80871 5.88728 5.95404 6.10094 6.12492 6.19082 6.25125 6.40018 6.43377 6.63965 6.75693 6.85871 7.04291 7.47724 7.51287 7.61673 7.70645 7.84291 8.01777 8.61857 9.00428 9.53020 11.03752 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011892 B = 0.003398 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.927914 B = 8238.547594 C = 9676.006770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.868 3.132 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.507 4.507 8 H 0.096 0.904 9 C 0.150 3.850 10 N -0.513 5.513 11 C 0.025 3.975 12 C 0.154 3.846 13 H 0.123 0.877 14 O -0.541 6.541 15 C -0.088 4.088 16 C -0.097 4.097 17 C -0.121 4.121 18 C 0.060 3.940 19 F -0.131 7.131 20 C 0.072 3.928 21 F -0.128 7.128 22 C -0.114 4.114 23 C 0.093 3.907 24 C -0.169 4.169 25 C 0.064 3.936 26 O -0.385 6.385 27 C 0.072 3.928 28 C -0.196 4.196 29 H 0.264 0.736 30 H 0.004 0.996 31 H 0.018 0.982 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.365 0.635 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.152 0.848 38 H 0.087 0.913 39 H 0.135 0.865 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.087 0.913 43 H 0.040 0.960 44 H 0.081 0.919 45 H 0.055 0.945 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.439 -9.431 1.221 19.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.696 3.304 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.545 4.545 8 H 0.113 0.887 9 C 0.024 3.976 10 N -0.234 5.234 11 C -0.104 4.104 12 C 0.094 3.906 13 H 0.140 0.860 14 O -0.346 6.346 15 C -0.089 4.089 16 C -0.115 4.115 17 C -0.140 4.140 18 C 0.040 3.960 19 F -0.109 7.109 20 C 0.052 3.948 21 F -0.107 7.107 22 C -0.133 4.133 23 C -0.016 4.016 24 C -0.206 4.206 25 C -0.013 4.013 26 O -0.303 6.303 27 C -0.006 4.006 28 C -0.235 4.235 29 H 0.074 0.926 30 H 0.021 0.979 31 H 0.036 0.964 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.213 0.787 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.169 0.831 38 H 0.105 0.895 39 H 0.153 0.847 40 H 0.085 0.915 41 H 0.053 0.947 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.099 0.901 45 H 0.073 0.927 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.424 -9.711 0.598 19.089 hybrid contribution 1.983 1.704 0.091 2.616 sum 18.407 -8.007 0.689 20.085 Atomic orbital electron populations 1.69871 1.06014 1.26821 1.50745 1.24885 0.94670 0.98570 0.95035 0.86977 0.80363 0.84639 0.78433 1.20359 1.21235 1.19426 1.21176 0.88713 0.94947 1.49679 0.88660 1.20442 0.97524 0.84253 0.95379 1.62072 1.13961 1.23528 1.23876 1.22742 0.92182 0.95477 1.00044 1.21034 0.90459 0.90336 0.88769 0.85967 1.86719 1.56688 1.58495 1.32705 1.20691 0.97558 0.97693 0.92979 1.20825 0.90886 0.99261 1.00523 1.21028 0.99149 1.01524 0.92271 1.17706 0.79071 1.06941 0.92255 1.91526 1.38403 1.94065 1.86948 1.17675 0.93555 1.05789 0.77830 1.91540 1.96113 1.93347 1.29660 1.21006 0.95555 1.00928 0.95789 1.21785 0.97103 0.96696 0.85989 1.22921 0.96919 1.06782 0.93959 1.22652 0.97998 0.90183 0.90489 1.87891 1.21749 1.63362 1.57347 1.22364 0.82761 0.99024 0.96421 1.22959 1.00344 1.03402 0.96752 0.92635 0.97881 0.96449 0.90449 0.94708 0.78744 0.84404 0.83604 0.83069 0.89540 0.84694 0.91526 0.94737 0.89462 0.94216 0.90082 0.92663 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 13.96 55.43 0.77 -25.48 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.87 20.72 27.54 -169.99 -4.68 16.04 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.18 6.45 56.52 0.36 -5.81 16 7 C -0.51 -13.21 7.30 -34.44 -0.25 -13.46 16 8 H 0.10 2.68 6.05 -52.49 -0.32 2.36 16 9 C 0.15 3.29 3.54 -4.97 -0.02 3.27 16 10 N -0.51 -9.30 4.37 -227.87 -1.00 -10.29 16 11 C 0.02 0.35 4.73 -3.83 -0.02 0.33 16 12 C 0.15 1.78 3.45 -27.89 -0.10 1.68 16 13 H 0.12 1.56 8.05 -51.93 -0.42 1.15 16 14 O -0.54 -6.11 10.52 -35.23 -0.37 -6.48 16 15 C -0.09 -0.86 5.00 -104.62 -0.52 -1.38 16 16 C -0.10 -0.77 9.30 -39.58 -0.37 -1.14 16 17 C -0.12 -0.99 10.02 -39.53 -0.40 -1.38 16 18 C 0.06 0.63 7.31 -39.36 -0.29 0.34 16 19 F -0.13 -1.49 17.18 2.25 0.04 -1.45 16 20 C 0.07 0.79 7.31 -39.36 -0.29 0.51 16 21 F -0.13 -1.57 17.18 2.25 0.04 -1.53 16 22 C -0.11 -1.17 9.66 -39.53 -0.38 -1.55 16 23 C 0.09 1.57 2.14 -67.53 -0.14 1.42 16 24 C -0.17 -3.21 4.30 -26.59 -0.11 -3.33 16 25 C 0.06 1.06 6.84 37.20 0.25 1.31 16 26 O -0.38 -6.83 10.77 -35.23 -0.38 -7.21 16 27 C 0.07 1.06 6.84 37.20 0.25 1.31 16 28 C -0.20 -3.15 4.73 -26.60 -0.13 -3.28 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.00 0.08 4.13 -51.93 -0.21 -0.13 16 31 H 0.02 0.39 7.19 -51.93 -0.37 0.02 16 32 H 0.08 1.11 7.53 -51.93 -0.39 0.72 16 33 H 0.03 0.45 6.41 -51.93 -0.33 0.11 16 34 H 0.36 2.83 7.15 45.56 0.33 3.15 16 35 H 0.14 0.75 6.51 -52.48 -0.34 0.41 16 36 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 38 H 0.09 1.32 5.26 -51.93 -0.27 1.04 16 39 H 0.14 3.18 4.56 -51.93 -0.24 2.94 16 40 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 43 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.77 6.74 -51.92 -0.35 0.42 16 46 H 0.09 1.75 5.84 -51.93 -0.30 1.44 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -30.20 360.66 -8.10 -38.30 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.36 Total: 6.17 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -2.60 Total: -13.51 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.22 Total: -35.77 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.75 Total: -13.69 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.08 Total: -2.98 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.68 Total: 16.04 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.20 -8.10 -38.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096421155.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.323 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds