Wall clock time and date at job start Tue Mar 31 2020 06:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99838 * 2 1 4 4 H 1.48503 * 109.47373 * 270.00113 * 3 2 1 5 5 H 1.48498 * 109.47096 * 30.00488 * 3 2 1 6 6 H 1.48503 * 109.47142 * 150.00218 * 3 2 1 7 7 C 1.37876 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00584 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99626 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.46912 * 176.58364 * 9 7 2 11 11 C 1.46903 * 111.00262 * 161.88857 * 10 9 7 12 12 C 1.52992 * 109.47456 * 203.80227 * 11 10 9 13 13 H 1.09005 * 109.47511 * 53.22941 * 12 11 10 14 14 O 1.42898 * 109.47267 * 293.23167 * 12 11 10 15 15 C 1.50700 * 109.47337 * 173.22835 * 12 11 10 16 16 C 1.38257 * 119.96306 * 84.72718 * 15 12 11 17 17 C 1.38214 * 120.07043 * 179.72957 * 16 15 12 18 18 C 1.38415 * 119.99908 * 0.54364 * 17 16 15 19 19 F 1.35097 * 120.03527 * 179.75345 * 18 17 16 20 20 C 1.38651 * 119.92928 * 359.72632 * 18 17 16 21 21 F 1.35096 * 120.03836 * 180.02562 * 20 18 17 22 22 C 1.38211 * 119.96558 * 264.99780 * 15 12 11 23 23 C 1.46903 * 111.00077 * 285.83998 * 10 9 7 24 24 C 1.53182 * 109.54155 * 69.30898 * 23 10 9 25 25 C 1.53092 * 109.15977 * 183.15133 * 24 23 10 26 26 O 1.42898 * 109.41576 * 57.61231 * 25 24 23 27 27 C 1.42904 * 114.09484 * 298.83825 * 26 25 24 28 28 C 1.53088 * 109.41462 * 61.16024 * 27 26 25 29 29 H 0.97003 * 120.00244 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47260 * 56.58789 * 9 7 2 31 31 H 1.08996 * 109.47223 * 296.58270 * 9 7 2 32 32 H 1.09003 * 109.46727 * 323.80360 * 11 10 9 33 33 H 1.08994 * 109.47465 * 83.79673 * 11 10 9 34 34 H 0.96701 * 113.99607 * 294.10725 * 14 12 11 35 35 H 1.08003 * 119.96675 * 0.02562 * 16 15 12 36 36 H 1.08002 * 120.00346 * 180.27508 * 17 16 15 37 37 H 1.08003 * 120.00318 * 0.02562 * 22 15 12 38 38 H 1.08998 * 109.54272 * 189.57488 * 23 10 9 39 39 H 1.08994 * 109.52191 * 303.06119 * 24 23 10 40 40 H 1.09006 * 109.51713 * 63.24708 * 24 23 10 41 41 H 1.09000 * 109.48141 * 297.62474 * 25 24 23 42 42 H 1.09003 * 109.47642 * 177.59692 * 25 24 23 43 43 H 1.08999 * 109.48233 * 301.17268 * 27 26 25 44 44 H 1.08998 * 109.48718 * 181.14567 * 27 26 25 45 45 H 1.09008 * 109.52296 * 182.48382 * 28 27 26 46 46 H 1.08998 * 109.52547 * 62.29532 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0013 -2.5765 0.0809 11 6 5.4056 -2.6636 -0.3415 12 6 5.7092 -4.0873 -0.8122 13 1 4.9831 -4.3822 -1.5698 14 8 5.6297 -4.9832 0.2981 15 6 7.0962 -4.1371 -1.3996 16 6 8.1903 -4.3129 -0.5729 17 6 9.4628 -4.3645 -1.1098 18 6 9.6438 -4.2289 -2.4754 19 9 10.8877 -4.2743 -3.0004 20 6 8.5470 -4.0470 -3.3038 21 9 8.7211 -3.9149 -4.6370 22 6 7.2735 -4.0014 -2.7636 23 6 3.8244 -3.1182 1.4349 24 6 2.3319 -3.3194 1.7153 25 6 2.1527 -3.8092 3.1547 26 8 2.7341 -2.8632 4.0542 27 6 4.1379 -2.6696 3.8700 28 6 4.3970 -2.1340 2.4594 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6283 0.8567 31 1 3.8745 -0.7339 -0.9201 32 1 5.5829 -1.9649 -1.1592 33 1 6.0538 -2.4124 0.4979 34 1 6.3082 -4.8364 0.9713 35 1 8.0501 -4.4148 0.4932 36 1 10.3164 -4.5063 -0.4634 37 1 6.4184 -3.8593 -3.4078 38 1 4.3440 -4.0729 1.5164 39 1 1.8060 -2.3738 1.5841 40 1 1.9284 -4.0605 1.0254 41 1 2.6447 -4.7744 3.2741 42 1 1.0899 -3.9132 3.3735 43 1 4.6560 -3.6199 3.9989 44 1 4.5055 -1.9527 4.6042 45 1 5.4703 -2.0274 2.3017 46 1 3.9127 -1.1645 2.3433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096421155.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:52 Heat of formation + Delta-G solvation = -158.922917 kcal Electronic energy + Delta-G solvation = -30862.822006 eV Core-core repulsion = 26388.329060 eV Total energy + Delta-G solvation = -4474.492946 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.54968 -49.63495 -41.11990 -40.26414 -38.36418 -37.07117 -34.57417 -33.20620 -32.23162 -31.86933 -31.59690 -30.27700 -27.87468 -25.42510 -24.46411 -24.31815 -24.29661 -22.60873 -22.10299 -20.34791 -19.28434 -18.90246 -18.32065 -18.23117 -17.45707 -17.37623 -17.21216 -16.76481 -16.53096 -16.26967 -16.06249 -15.80487 -15.69088 -15.53122 -15.32254 -15.10551 -14.96866 -14.73391 -14.36417 -14.08673 -13.97585 -13.56832 -13.34402 -13.27032 -13.12516 -12.75692 -12.63119 -12.55807 -12.36081 -12.20060 -12.05642 -11.99047 -11.80170 -11.53311 -11.23552 -11.06916 -10.67619 -10.51434 -10.20697 -10.11245 -9.71149 -8.79675 -8.18362 -6.14424 -0.19892 -0.03579 1.33638 1.35520 1.43232 2.26788 2.37893 2.71462 3.04487 3.12976 3.15431 3.25282 3.49308 3.58203 3.66640 3.97716 4.03700 4.07529 4.10028 4.21275 4.23097 4.31016 4.46647 4.52397 4.64627 4.65197 4.68507 4.75702 4.78085 4.84404 4.86147 4.90493 4.92798 4.98107 4.99822 5.15160 5.22451 5.31745 5.38181 5.53616 5.67062 5.68508 5.92785 6.12741 6.44188 6.53995 6.76444 6.86152 6.89126 7.43185 8.96493 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011892 B = 0.003398 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.927914 B = 8238.547594 C = 9676.006770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.929 3.071 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.251 1.251 7 C -0.494 4.494 8 H 0.061 0.939 9 C 0.159 3.841 10 N -0.530 5.530 11 C 0.025 3.975 12 C 0.170 3.830 13 H 0.103 0.897 14 O -0.550 6.550 15 C -0.091 4.091 16 C -0.083 4.083 17 C -0.110 4.110 18 C 0.048 3.952 19 F -0.140 7.140 20 C 0.049 3.951 21 F -0.143 7.143 22 C -0.120 4.120 23 C 0.097 3.903 24 C -0.166 4.166 25 C 0.069 3.931 26 O -0.410 6.410 27 C 0.067 3.933 28 C -0.190 4.190 29 H 0.261 0.739 30 H 0.005 0.995 31 H 0.016 0.984 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.384 0.616 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.151 0.849 38 H 0.115 0.885 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.084 -10.360 3.172 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.188 4.188 3 Si 0.755 3.245 4 H -0.197 1.197 5 H -0.217 1.217 6 H -0.175 1.175 7 C -0.532 4.532 8 H 0.079 0.921 9 C 0.032 3.968 10 N -0.252 5.252 11 C -0.104 4.104 12 C 0.110 3.890 13 H 0.121 0.879 14 O -0.358 6.358 15 C -0.092 4.092 16 C -0.101 4.101 17 C -0.128 4.128 18 C 0.028 3.972 19 F -0.119 7.119 20 C 0.029 3.971 21 F -0.121 7.121 22 C -0.139 4.139 23 C -0.011 4.011 24 C -0.204 4.204 25 C -0.008 4.008 26 O -0.329 6.329 27 C -0.010 4.010 28 C -0.229 4.229 29 H 0.070 0.930 30 H 0.022 0.978 31 H 0.034 0.966 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.235 0.765 35 H 0.192 0.808 36 H 0.194 0.806 37 H 0.169 0.831 38 H 0.133 0.867 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 20.115 -10.656 2.556 22.906 hybrid contribution 0.858 1.862 -0.489 2.107 sum 20.973 -8.794 2.067 22.836 Atomic orbital electron populations 1.70032 1.07868 1.27426 1.53682 1.25679 0.95342 1.02300 0.95514 0.85982 0.79637 0.80202 0.78703 1.19723 1.21705 1.17484 1.21458 0.91173 0.93481 1.47076 0.92123 1.20179 0.94601 0.86886 0.95111 1.61915 1.17182 1.20940 1.25130 1.22841 0.89743 0.97181 1.00628 1.20618 0.91097 0.88685 0.88606 0.87893 1.86690 1.57862 1.58130 1.33101 1.20509 0.97159 0.98743 0.92775 1.21205 0.89866 0.97015 1.02017 1.21365 1.00336 0.99830 0.91318 1.18027 0.78461 1.07418 0.93295 1.91501 1.38898 1.94199 1.87275 1.17895 0.94319 1.07422 0.77484 1.91496 1.96220 1.93671 1.30747 1.21061 0.95327 1.01046 0.96420 1.21833 0.95526 0.98136 0.85637 1.22709 0.98388 1.03600 0.95695 1.22589 0.98435 0.91241 0.88509 1.87864 1.23867 1.63825 1.57358 1.22615 0.81412 1.01211 0.95725 1.22883 1.01664 1.00839 0.97510 0.92965 0.97759 0.96586 0.91017 0.92350 0.76533 0.80790 0.80572 0.83145 0.86720 0.89910 0.93029 0.91507 0.89981 0.90715 0.88471 0.89460 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.46 13.96 21.45 0.30 -58.16 16 2 C 0.01 0.47 5.47 84.65 0.46 0.93 16 3 Si 0.93 43.52 27.54 68.60 1.89 45.41 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.25 -10.87 6.45 99.48 0.64 -10.23 16 7 C -0.49 -26.73 7.30 25.60 0.19 -26.54 16 8 H 0.06 3.64 6.05 -2.91 -0.02 3.62 16 9 C 0.16 6.96 3.54 85.56 0.30 7.26 16 10 N -0.53 -18.60 4.37 -874.84 -3.82 -22.42 16 11 C 0.02 0.62 4.73 86.30 0.41 1.02 16 12 C 0.17 3.44 3.45 29.85 0.10 3.55 16 13 H 0.10 2.52 8.05 -2.38 -0.02 2.50 16 14 O -0.55 -10.01 10.52 -148.98 -1.57 -11.57 16 15 C -0.09 -1.49 5.00 -19.87 -0.10 -1.59 16 16 C -0.08 -0.92 9.30 22.27 0.21 -0.71 16 17 C -0.11 -1.33 10.02 22.31 0.22 -1.11 16 18 C 0.05 0.90 7.31 22.41 0.16 1.06 16 19 F -0.14 -2.98 17.18 44.97 0.77 -2.21 16 20 C 0.05 1.04 7.31 22.41 0.16 1.20 16 21 F -0.14 -3.53 17.18 44.97 0.77 -2.76 16 22 C -0.12 -2.30 9.66 22.31 0.22 -2.09 16 23 C 0.10 3.07 2.14 45.03 0.10 3.16 16 24 C -0.17 -6.41 4.30 30.69 0.13 -6.28 16 25 C 0.07 2.22 6.84 72.01 0.49 2.72 16 26 O -0.41 -13.86 10.77 -148.98 -1.60 -15.46 16 27 C 0.07 1.72 6.84 72.01 0.49 2.22 16 28 C -0.19 -5.55 4.73 30.68 0.15 -5.41 16 29 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.00 0.22 4.13 -2.39 -0.01 0.21 16 31 H 0.02 0.71 7.19 -2.39 -0.02 0.69 16 32 H 0.07 1.90 7.53 -2.39 -0.02 1.88 16 33 H 0.06 1.20 6.41 -2.39 -0.02 1.19 16 34 H 0.38 3.53 7.15 -74.06 -0.53 3.00 16 35 H 0.17 0.66 6.51 -2.91 -0.02 0.64 16 36 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 37 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 38 H 0.12 3.03 5.26 -2.39 -0.01 3.01 16 39 H 0.08 4.12 4.56 -2.39 -0.01 4.11 16 40 H 0.05 2.07 8.12 -2.38 -0.02 2.05 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.09 1.97 6.74 -2.38 -0.02 1.96 16 46 H 0.05 1.79 5.84 -2.39 -0.01 1.77 16 Total: -1.00 -70.67 360.66 0.88 -69.79 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.44 Total: 17.97 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 3.70 Total: -20.60 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -3.52 Total: -80.58 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -3.17 Total: -27.04 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 1.55 Total: -4.96 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.89 Total: 45.41 kcal Total: -70.67 0.88 -69.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096421155.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.130 kcal (2) G-P(sol) polarization free energy of solvation -70.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds