Wall clock time and date at job start Tue Mar 31 2020 06:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34551 * 126.36123 * 2 1 4 4 N 1.34163 * 107.83717 * 180.26154 * 3 2 1 5 5 C 1.31217 * 108.64460 * 0.02562 * 4 3 2 6 6 C 1.47845 * 125.72414 * 179.97438 * 5 4 3 7 7 C 1.39616 * 120.10753 * 179.75959 * 6 5 4 8 8 C 1.37991 * 119.98971 * 179.76500 * 7 6 5 9 9 C 1.38252 * 120.21987 * 0.51284 * 8 7 6 10 10 C 1.38957 * 120.22067 * 359.74227 * 9 8 7 11 11 N 1.39968 * 119.99461 * 179.97438 * 10 9 8 12 12 C 1.34773 * 120.00138 * 320.48350 * 11 10 9 13 13 O 1.21587 * 120.00202 * 4.00124 * 12 11 10 14 14 N 1.34783 * 119.99946 * 184.00209 * 12 11 10 15 15 C 1.46491 * 119.99874 * 7.64527 * 14 12 11 16 16 C 1.50696 * 109.47614 * 89.99851 * 15 14 12 17 17 H 1.07997 * 119.99899 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00209 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99853 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99993 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.46801 * 90.00163 * 20 18 16 22 22 H 1.48503 * 109.46928 * 209.99874 * 20 18 16 23 23 H 1.48498 * 109.47180 * 330.00064 * 20 18 16 24 24 C 1.46498 * 119.99871 * 187.64390 * 14 12 11 25 25 C 1.53001 * 117.49871 * 14.83040 * 24 14 12 26 26 C 1.53001 * 117.49882 * 306.17386 * 24 14 12 27 27 C 1.38624 * 120.00340 * 0.02562 * 10 9 8 28 28 O 1.34428 * 108.55287 * 359.97438 * 5 4 3 29 29 H 1.08994 * 109.46764 * 179.71240 * 1 2 3 30 30 H 1.09003 * 109.47090 * 299.71288 * 1 2 3 31 31 H 1.09004 * 109.47169 * 59.71289 * 1 2 3 32 32 H 1.07998 * 126.08457 * 0.23037 * 3 2 1 33 33 H 1.07998 * 120.00998 * 0.02562 * 7 6 5 34 34 H 1.07995 * 119.88829 * 180.25228 * 8 7 6 35 35 H 1.07994 * 119.88987 * 179.72135 * 9 8 7 36 36 H 0.96998 * 119.99611 * 140.48803 * 11 10 9 37 37 H 1.09005 * 109.47041 * 209.99934 * 15 14 12 38 38 H 1.09005 * 109.47447 * 329.99323 * 15 14 12 39 39 H 0.96999 * 120.00011 * 180.02562 * 19 18 16 40 40 H 1.09004 * 115.54988 * 160.50379 * 24 14 12 41 41 H 1.08999 * 117.50032 * 0.02562 * 25 24 14 42 42 H 1.09003 * 117.49569 * 145.01908 * 25 24 14 43 43 H 1.09005 * 117.49663 * 214.98103 * 26 24 14 44 44 H 1.08999 * 117.50122 * 359.97294 * 26 24 14 45 45 H 1.07996 * 120.11017 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0835 0.0000 4 7 3.5769 0.6573 -0.0058 5 6 3.5796 -0.6549 -0.0099 6 6 4.7817 -1.5156 -0.0174 7 6 4.6480 -2.9053 -0.0162 8 6 5.7715 -3.7063 -0.0281 9 6 7.0316 -3.1376 -0.0306 10 6 7.1752 -1.7554 -0.0265 11 7 8.4532 -1.1846 -0.0285 12 6 9.4379 -1.7343 0.7094 13 8 9.2367 -2.7668 1.3192 14 7 10.6458 -1.1396 0.7714 15 6 10.8412 0.1853 0.1777 16 6 10.5464 1.2457 1.2071 17 1 10.2442 0.9611 2.2041 18 6 10.6636 2.5791 0.8764 19 7 10.4069 3.5044 1.7750 20 14 11.1870 3.0712 -0.8479 21 1 9.9846 3.2198 -1.7066 22 1 11.9190 4.3621 -0.7934 23 1 12.0734 2.0230 -1.4143 24 6 11.7632 -1.8180 1.4327 25 6 11.6107 -3.3126 1.7222 26 6 11.5470 -2.3002 2.8685 27 6 6.0527 -0.9420 -0.0194 28 8 2.3061 -1.0853 -0.0062 29 1 -0.3633 -1.0276 -0.0052 30 1 -0.3633 0.5094 0.8926 31 1 -0.3634 0.5183 -0.8874 32 1 1.9790 2.1132 0.0035 33 1 3.6654 -3.3534 -0.0102 34 1 5.6662 -4.7811 -0.0312 35 1 7.9073 -3.7695 -0.0353 36 1 8.6300 -0.3934 -0.5609 37 1 11.8729 0.2836 -0.1600 38 1 10.1681 0.3059 -0.6712 39 1 10.4889 4.4425 1.5423 40 1 12.7565 -1.4555 1.1677 41 1 10.6790 -3.7912 1.4203 42 1 12.5036 -3.9333 1.6480 43 1 12.3981 -2.2553 3.5481 44 1 10.5735 -2.1123 3.3213 45 1 6.1622 0.1324 -0.0158 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096434784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:18 Heat of formation + Delta-G solvation = 75.212142 kcal Electronic energy + Delta-G solvation = -28946.644682 eV Core-core repulsion = 24932.993781 eV Total energy + Delta-G solvation = -4013.650901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.33541 -40.48561 -38.84428 -36.33543 -34.82571 -34.81996 -33.67893 -32.90681 -32.22011 -30.99910 -29.29975 -27.74092 -26.72881 -23.68402 -23.50888 -22.47910 -22.01152 -21.82243 -21.60288 -20.86111 -19.41826 -18.02220 -17.08665 -16.92311 -16.82267 -16.33671 -16.11642 -15.54251 -15.08342 -14.81785 -14.45224 -14.37348 -14.21374 -13.83989 -13.61772 -13.51582 -13.34576 -13.27711 -12.72637 -12.69135 -12.62734 -12.31022 -12.07695 -11.72980 -11.47440 -11.41642 -11.32025 -10.94348 -10.82739 -10.68255 -10.52393 -10.09373 -10.01496 -9.79898 -9.60341 -9.46619 -9.12800 -8.75668 -8.28333 -7.95488 -7.53621 -6.23242 -4.26064 0.67266 1.41747 1.77488 2.42634 2.75677 3.07544 3.14593 3.21267 3.25183 3.53436 3.90577 3.98893 4.22870 4.26147 4.57275 4.59368 4.83372 4.88435 5.04556 5.07740 5.09161 5.15151 5.23812 5.38272 5.40728 5.48696 5.54446 5.61513 5.63597 5.74162 5.88315 5.98153 6.09682 6.18423 6.21289 6.31551 6.35168 6.45670 6.46643 6.52360 6.59061 6.70931 6.88367 7.21107 7.22828 7.36542 7.53046 7.66576 8.21527 8.46107 8.84824 9.04982 9.34455 10.89393 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009871 B = 0.003409 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.792139 B = 8210.749561 C =10413.752885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.057 4.057 3 C -0.035 4.035 4 N -0.468 5.468 5 C 0.240 3.760 6 C -0.008 4.008 7 C -0.112 4.112 8 C -0.106 4.106 9 C -0.096 4.096 10 C 0.179 3.821 11 N -0.684 5.684 12 C 0.715 3.285 13 O -0.590 6.590 14 N -0.577 5.577 15 C 0.215 3.785 16 C -0.542 4.542 17 H 0.080 0.920 18 C 0.077 3.923 19 N -0.886 5.886 20 Si 0.869 3.131 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.264 1.264 24 C 0.103 3.897 25 C -0.202 4.202 26 C -0.184 4.184 27 C -0.096 4.096 28 O -0.196 6.196 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.185 0.815 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.414 0.586 37 H 0.039 0.961 38 H 0.021 0.979 39 H 0.267 0.733 40 H 0.125 0.875 41 H 0.136 0.864 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.405 -10.675 -6.540 18.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C -0.175 4.175 4 N -0.195 5.195 5 C 0.037 3.963 6 C -0.010 4.010 7 C -0.132 4.132 8 C -0.125 4.125 9 C -0.117 4.117 10 C 0.083 3.917 11 N -0.333 5.333 12 C 0.418 3.582 13 O -0.471 6.471 14 N -0.308 5.308 15 C 0.093 3.907 16 C -0.581 4.581 17 H 0.098 0.902 18 C -0.127 4.127 19 N -0.523 5.523 20 Si 0.696 3.304 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.189 1.189 24 C -0.003 4.003 25 C -0.239 4.239 26 C -0.223 4.223 27 C -0.118 4.118 28 O -0.084 6.084 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.202 0.798 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.160 0.840 36 H 0.253 0.747 37 H 0.057 0.943 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.143 0.857 41 H 0.154 0.846 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.908 -10.771 -6.075 17.876 hybrid contribution -0.251 0.933 -0.899 1.320 sum -13.159 -9.838 -6.974 17.849 Atomic orbital electron populations 1.20255 0.83925 1.04224 1.03826 1.23533 0.94995 0.84533 1.07970 1.23117 0.87746 1.00448 1.06208 1.70711 1.22781 1.08482 1.17562 1.23791 0.82546 0.88939 1.00996 1.16888 0.86766 0.90886 1.06418 1.21071 0.99416 0.91590 1.01152 1.20885 0.91394 0.99854 1.00329 1.21468 0.98458 0.93682 0.98082 1.17304 0.83791 0.91787 0.98835 1.42863 1.07776 1.33440 1.49266 1.15741 0.80324 0.82881 0.79220 1.90681 1.81024 1.25261 1.50087 1.46477 1.07202 1.19071 1.58061 1.19757 0.97495 0.79589 0.93813 1.21364 1.47825 0.89498 0.99371 0.90207 1.24890 0.94457 0.96328 0.97018 1.69891 1.47707 1.00747 1.33988 0.86963 0.79549 0.78882 0.85044 1.19751 1.20743 1.18885 1.21335 0.89631 0.93516 0.95792 1.23890 1.04717 0.92126 1.03195 1.23159 1.02962 1.04270 0.91945 1.20976 0.89354 1.01053 1.00368 1.84428 1.17489 1.36311 1.70150 0.90455 0.89335 0.89373 0.79804 0.85559 0.85142 0.84028 0.74677 0.94291 0.96164 0.92291 0.85721 0.84608 0.90146 0.89422 0.88655 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.43 36.01 0.38 -0.03 16 2 C -0.06 -0.64 7.39 -35.61 -0.26 -0.90 16 3 C -0.03 -0.44 11.79 -17.84 -0.21 -0.65 16 4 N -0.47 -7.59 10.91 -11.72 -0.13 -7.72 16 5 C 0.24 3.70 7.90 -13.89 -0.11 3.59 16 6 C -0.01 -0.12 5.87 -105.00 -0.62 -0.73 16 7 C -0.11 -1.43 9.71 -39.16 -0.38 -1.81 16 8 C -0.11 -1.32 10.02 -39.67 -0.40 -1.72 16 9 C -0.10 -1.44 8.67 -39.31 -0.34 -1.78 16 10 C 0.18 3.00 6.21 -83.73 -0.52 2.48 16 11 N -0.68 -12.48 5.21 -14.25 -0.07 -12.55 16 12 C 0.72 14.33 7.89 -86.92 -0.69 13.64 16 13 O -0.59 -12.12 9.87 5.29 0.05 -12.07 16 14 N -0.58 -11.68 2.82 -173.17 -0.49 -12.17 16 15 C 0.21 4.64 4.24 -5.20 -0.02 4.61 16 16 C -0.54 -14.30 9.94 -34.44 -0.34 -14.64 16 17 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 18 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.89 -25.92 13.96 55.43 0.77 -25.14 16 20 Si 0.87 19.49 27.47 -169.99 -4.67 14.83 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 24 C 0.10 1.86 6.61 -67.93 -0.45 1.42 16 25 C -0.20 -3.30 9.62 -26.70 -0.26 -3.55 16 26 C -0.18 -3.27 9.89 -26.69 -0.26 -3.54 16 27 C -0.10 -1.57 9.61 -38.99 -0.37 -1.94 16 28 O -0.20 -2.66 10.52 4.07 0.04 -2.62 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.13 1.34 7.90 -52.49 -0.41 0.93 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.14 2.20 6.57 -52.49 -0.34 1.85 16 36 H 0.41 7.33 6.46 -40.82 -0.26 7.07 16 37 H 0.04 0.82 7.09 -51.93 -0.37 0.45 16 38 H 0.02 0.42 5.49 -51.93 -0.28 0.13 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.13 2.04 8.10 -51.93 -0.42 1.62 16 41 H 0.14 2.47 5.17 -52.26 -0.27 2.20 16 42 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.09 1.95 7.66 -51.93 -0.40 1.55 16 45 H 0.14 2.49 7.83 -52.49 -0.41 2.07 16 LS Contribution 378.23 15.07 5.70 5.70 Total: -1.00 -32.04 378.23 -9.47 -41.51 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -5.72 Total: 13.80 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -4.95 Total: -3.57 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.08 Total: -57.59 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: 0.09 Total: -14.69 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.67 Total: 14.83 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.04 -9.47 -41.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096434784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.727 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds