Wall clock time and date at job start Tue Mar 31 2020 05:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76197 * 102.99921 * 2 1 4 4 C 1.38914 * 120.01388 * 359.97438 * 3 2 1 5 5 C 1.38061 * 119.99851 * 179.97438 * 4 3 2 6 6 C 1.38859 * 120.03413 * 0.30057 * 5 4 3 7 7 N 1.40187 * 119.98743 * 179.70606 * 6 5 4 8 8 C 1.34777 * 120.00314 * 143.46383 * 7 6 5 9 9 O 1.21598 * 119.99998 * 4.03886 * 8 7 6 10 10 N 1.34776 * 120.00104 * 184.04959 * 8 7 6 11 11 C 1.46492 * 120.00245 * 6.85770 * 10 8 7 12 12 C 1.50703 * 109.47044 * 90.00273 * 11 10 8 13 13 H 1.08002 * 120.00010 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99989 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99861 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 119.99985 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47357 * 90.00023 * 16 14 12 18 18 H 1.48503 * 109.47359 * 209.99963 * 16 14 12 19 19 H 1.48499 * 109.47527 * 330.00009 * 16 14 12 20 20 C 1.46507 * 119.99741 * 186.86207 * 10 8 7 21 21 C 1.52999 * 117.49800 * 15.07172 * 20 10 8 22 22 C 1.52999 * 117.49665 * 306.41170 * 20 10 8 23 23 C 1.38844 * 120.02419 * 359.44713 * 6 5 4 24 24 C 1.38160 * 119.99636 * 0.53165 * 23 6 5 25 25 Cl 1.73598 * 120.01399 * 179.72678 * 24 23 6 26 26 H 1.08998 * 109.47085 * 60.00360 * 1 2 3 27 27 H 1.09004 * 109.47414 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47400 * 300.00142 * 1 2 3 29 29 H 1.08001 * 119.99997 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.98253 * 180.02562 * 5 4 3 31 31 H 0.96999 * 120.00320 * 323.45073 * 7 6 5 32 32 H 1.08998 * 109.47345 * 210.00201 * 11 10 8 33 33 H 1.09005 * 109.47244 * 330.00501 * 11 10 8 34 34 H 0.96996 * 119.99871 * 180.02562 * 15 14 12 35 35 H 1.08998 * 115.54548 * 160.74037 * 20 10 8 36 36 H 1.08998 * 117.50244 * 0.02562 * 21 20 10 37 37 H 1.09000 * 117.49720 * 145.02423 * 21 20 10 38 38 H 1.09004 * 117.49347 * 214.98199 * 22 20 10 39 39 H 1.08993 * 117.50098 * 359.97438 * 22 20 10 40 40 H 1.08001 * 119.99973 * 180.27969 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1946 2.6644 -0.0005 5 6 1.5055 4.0096 0.0000 6 6 2.8333 4.4160 -0.0052 7 7 3.1478 5.7821 -0.0109 8 6 4.2149 6.2309 0.6793 9 8 4.9472 5.4431 1.2465 10 7 4.4703 7.5528 0.7410 11 6 3.5101 8.5109 0.1878 12 6 2.5240 8.9077 1.2562 13 1 2.6044 8.4877 2.2480 14 6 1.5187 9.8060 0.9672 15 7 0.6579 10.1518 1.8995 16 14 1.3785 10.5307 -0.7487 17 1 0.5053 9.6654 -1.5817 18 1 0.7912 11.8920 -0.6647 19 1 2.7277 10.6108 -1.3640 20 6 5.7082 8.0315 1.3613 21 6 6.8208 7.0085 1.5989 22 6 6.0170 7.5543 2.7818 23 6 3.8495 3.4699 0.0006 24 6 3.5397 2.1235 0.0005 25 17 4.8099 0.9402 0.0006 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.1617 2.3489 -0.0014 30 1 0.7156 4.7461 0.0000 31 1 2.5976 6.4045 -0.5118 32 1 4.0410 9.3958 -0.1633 33 1 2.9779 8.0520 -0.6455 34 1 -0.0495 10.7834 1.6961 35 1 6.0055 9.0459 1.0953 36 1 6.6320 5.9794 1.2934 37 1 7.8501 7.3500 1.4897 38 1 6.5179 8.2547 3.4502 39 1 5.2990 6.8846 3.2550 40 1 4.8820 3.7865 0.0011 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096447274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:37 Heat of formation + Delta-G solvation = 42.824238 kcal Electronic energy + Delta-G solvation = -24778.766754 eV Core-core repulsion = 21133.624245 eV Total energy + Delta-G solvation = -3645.142508 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 340.075 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.58442 -38.95578 -36.69549 -36.12383 -34.86824 -33.58533 -32.32968 -31.01752 -29.64857 -28.83815 -27.80830 -23.75055 -22.84961 -22.54665 -21.84525 -21.68333 -19.58731 -18.04466 -17.50788 -17.09127 -16.90177 -15.74810 -15.58884 -14.96398 -14.85284 -14.57869 -14.31138 -14.30941 -14.13310 -13.83798 -13.49181 -13.21211 -12.92111 -12.72827 -12.38175 -12.27671 -12.08895 -11.80346 -11.53257 -11.47817 -11.06640 -10.98356 -10.89692 -10.74687 -10.29603 -10.28233 -10.13882 -9.83401 -9.67362 -9.20623 -8.84992 -8.79772 -8.76481 -7.69611 -7.23269 -6.31306 -4.34394 1.04767 1.23354 1.37038 2.07118 2.34937 2.97989 3.06421 3.15146 3.18584 3.32712 3.77581 4.15157 4.19632 4.54431 4.71173 4.84487 4.85646 4.96951 5.11011 5.27527 5.32984 5.38221 5.44996 5.47176 5.60159 5.69649 5.88944 6.05467 6.09985 6.18458 6.24116 6.30199 6.38915 6.43223 6.61138 6.83352 7.07844 7.14202 7.28600 7.46002 8.13388 8.38310 8.76751 8.96939 9.26345 10.81210 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.012280 B = 0.003588 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.551855 B = 7802.968902 C = 9525.897835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.099 6.099 3 C -0.108 4.108 4 C -0.102 4.102 5 C -0.125 4.125 6 C 0.192 3.808 7 N -0.682 5.682 8 C 0.713 3.287 9 O -0.586 6.586 10 N -0.576 5.576 11 C 0.214 3.786 12 C -0.543 4.543 13 H 0.080 0.920 14 C 0.077 3.923 15 N -0.887 5.887 16 Si 0.870 3.130 17 H -0.273 1.273 18 H -0.281 1.281 19 H -0.264 1.264 20 C 0.102 3.898 21 C -0.202 4.202 22 C -0.184 4.184 23 C -0.097 4.097 24 C -0.001 4.001 25 Cl -0.057 7.057 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.415 0.585 32 H 0.040 0.960 33 H 0.020 0.980 34 H 0.267 0.733 35 H 0.126 0.874 36 H 0.137 0.863 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.145 -14.427 -6.684 16.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.142 5.858 3 C -0.222 4.222 4 C -0.126 4.126 5 C -0.147 4.147 6 C 0.092 3.908 7 N -0.331 5.331 8 C 0.416 3.584 9 O -0.467 6.467 10 N -0.307 5.307 11 C 0.093 3.907 12 C -0.581 4.581 13 H 0.098 0.902 14 C -0.127 4.127 15 N -0.524 5.524 16 Si 0.696 3.304 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.188 1.188 20 C -0.004 4.004 21 C -0.239 4.239 22 C -0.223 4.223 23 C -0.119 4.119 24 C -0.034 4.034 25 Cl -0.028 7.028 26 H 0.102 0.898 27 H 0.125 0.875 28 H 0.103 0.897 29 H 0.151 0.849 30 H 0.156 0.844 31 H 0.255 0.745 32 H 0.058 0.942 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.143 0.857 36 H 0.154 0.846 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.262 -15.878 -6.240 17.369 hybrid contribution -1.465 2.150 -0.885 2.748 sum 1.797 -13.728 -7.125 15.571 Atomic orbital electron populations 1.23733 0.95729 1.06941 1.05720 1.85604 1.05355 1.02097 1.92734 1.21433 0.94432 0.97529 1.08854 1.20834 0.97918 0.91957 1.01924 1.21003 0.95242 0.96005 1.02474 1.17400 0.92335 0.83106 0.97920 1.42945 1.31546 1.06183 1.52381 1.15789 0.80733 0.82844 0.79052 1.90696 1.49207 1.55498 1.51294 1.46485 1.20556 1.03632 1.59983 1.19764 0.88221 0.88382 0.94340 1.21377 1.11195 1.26892 0.98650 0.90184 1.24893 0.95171 0.95695 0.96943 1.69890 1.16182 1.33140 1.33142 0.86960 0.79063 0.79536 0.84853 1.19842 1.20687 1.18845 1.21351 0.85146 0.97105 0.96763 1.23904 0.94349 1.02773 1.02870 1.23158 1.03640 1.03763 0.91711 1.21127 1.01361 0.89204 1.00256 1.20131 0.87340 0.90106 1.05828 1.98357 1.50685 1.56979 1.96764 0.89755 0.87525 0.89683 0.84850 0.84395 0.74528 0.94204 0.96197 0.92251 0.85670 0.84561 0.90081 0.89372 0.88673 0.82635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.15 101.05 0.92 -0.22 16 2 S -0.10 -1.12 21.46 -107.50 -2.31 -3.42 16 3 C -0.11 -1.45 6.11 -39.04 -0.24 -1.69 16 4 C -0.10 -1.27 9.36 -39.40 -0.37 -1.63 16 5 C -0.12 -1.73 9.96 -39.42 -0.39 -2.12 16 6 C 0.19 3.07 6.28 -83.58 -0.52 2.55 16 7 N -0.68 -11.83 5.23 -14.17 -0.07 -11.91 16 8 C 0.71 13.93 7.91 -86.92 -0.69 13.24 16 9 O -0.59 -11.97 9.65 5.28 0.05 -11.92 16 10 N -0.58 -11.34 2.82 -173.17 -0.49 -11.83 16 11 C 0.21 4.46 4.22 -5.20 -0.02 4.44 16 12 C -0.54 -13.79 9.94 -34.44 -0.34 -14.13 16 13 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 14 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 15 N -0.89 -25.03 13.96 55.43 0.77 -24.26 16 16 Si 0.87 18.72 27.47 -169.99 -4.67 14.05 16 17 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.26 -5.35 6.54 56.52 0.37 -4.98 16 20 C 0.10 1.81 6.61 -67.93 -0.45 1.36 16 21 C -0.20 -3.28 9.62 -26.69 -0.26 -3.54 16 22 C -0.18 -3.22 9.89 -26.69 -0.26 -3.48 16 23 C -0.10 -1.55 8.46 -39.39 -0.33 -1.89 16 24 C 0.00 -0.01 6.33 -39.32 -0.25 -0.26 16 25 Cl -0.06 -0.78 27.82 -51.86 -1.44 -2.23 16 26 H 0.08 0.56 7.74 -51.93 -0.40 0.16 16 27 H 0.11 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.08 0.61 7.75 -51.92 -0.40 0.21 16 29 H 0.13 1.28 5.87 -52.49 -0.31 0.98 16 30 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.42 6.84 6.46 -40.82 -0.26 6.57 16 32 H 0.04 0.82 7.10 -51.93 -0.37 0.45 16 33 H 0.02 0.39 5.51 -51.93 -0.29 0.10 16 34 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.13 2.01 8.10 -51.93 -0.42 1.59 16 36 H 0.14 2.49 5.16 -52.32 -0.27 2.22 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.09 1.91 7.67 -51.93 -0.40 1.51 16 40 H 0.16 2.67 6.33 -52.49 -0.33 2.33 16 LS Contribution 355.00 15.07 5.35 5.35 Total: -1.00 -28.93 355.00 -10.84 -39.77 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -4.73 Total: 11.87 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -3.30 Total: -5.47 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.21 Total: -48.00 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.05 Total: -11.92 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -4.67 Total: 14.05 kcal Atomic # 16 Polarization: -1.12 SS G_CDS: -2.31 Total: -3.42 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.44 Total: -2.23 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.93 -10.84 -39.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096447274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.595 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds