Wall clock time and date at job start Tue Mar 31 2020 05:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99789 * 2 1 4 4 H 1.48500 * 109.47259 * 270.00100 * 3 2 1 5 5 H 1.48502 * 109.47174 * 30.00089 * 3 2 1 6 6 H 1.48503 * 109.46850 * 149.99910 * 3 2 1 7 7 C 1.37877 * 120.00426 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00643 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99716 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.35611 * 124.77786 * 265.04127 * 10 9 7 12 12 C 1.36661 * 109.69582 * 179.97438 * 11 10 9 13 13 C 1.46374 * 126.78732 * 180.02562 * 12 11 10 14 14 C 1.35453 * 120.00025 * 312.55950 * 13 12 11 15 15 C 1.41492 * 120.00027 * 348.86653 * 14 13 12 16 16 O 1.21785 * 120.00022 * 353.06175 * 15 14 13 17 17 N 1.34780 * 120.00065 * 173.07429 * 15 14 13 18 18 C 1.47155 * 120.98232 * 354.51455 * 17 15 14 19 19 C 1.53705 * 108.15920 * 129.43340 * 18 17 15 20 20 O 1.42958 * 109.15103 * 52.53978 * 19 18 17 21 21 C 1.42957 * 114.16854 * 297.28758 * 20 19 18 22 22 C 1.47148 * 120.98000 * 174.79895 * 17 15 14 23 23 C 1.47520 * 106.42541 * 359.97438 * 12 11 10 24 24 C 1.39251 * 133.96416 * 179.97438 * 23 12 11 25 25 C 1.37768 * 119.68108 * 180.02562 * 24 23 12 26 26 C 1.38751 * 120.29021 * 0.25360 * 25 24 23 27 27 C 1.37781 * 120.62925 * 359.47479 * 26 25 24 28 28 C 1.37991 * 124.77984 * 85.00043 * 10 9 7 29 29 H 0.96998 * 120.00511 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47299 * 60.00310 * 9 7 2 31 31 H 1.09000 * 109.46933 * 300.00071 * 9 7 2 32 32 H 1.07998 * 125.15425 * 359.97438 * 11 10 9 33 33 H 1.08001 * 120.00145 * 132.56099 * 13 12 11 34 34 H 1.08006 * 120.00213 * 168.85430 * 14 13 12 35 35 H 1.08996 * 109.68003 * 249.21515 * 18 17 15 36 36 H 1.09001 * 109.67930 * 9.76710 * 18 17 15 37 37 H 1.09008 * 109.66250 * 292.57222 * 19 18 17 38 38 H 1.09001 * 109.48301 * 172.40059 * 19 18 17 39 39 H 1.09007 * 109.51060 * 302.65579 * 21 20 19 40 40 H 1.08996 * 109.56012 * 182.52922 * 21 20 19 41 41 H 1.09000 * 109.68689 * 350.23690 * 22 17 15 42 42 H 1.09002 * 109.68230 * 110.75096 * 22 17 15 43 43 H 1.08001 * 120.16173 * 0.02562 * 24 23 12 44 44 H 1.07992 * 119.86125 * 179.97438 * 25 24 23 45 45 H 1.08005 * 119.68181 * 179.72082 * 26 25 24 46 46 H 1.08001 * 120.02933 * 180.25854 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2032 -3.6127 -0.0015 11 6 2.6336 -4.2626 -1.1111 12 6 3.5146 -5.2454 -0.7567 13 6 4.2048 -6.1704 -1.6570 14 6 3.5110 -6.8207 -2.6217 15 6 2.0964 -6.7940 -2.6157 16 8 1.5007 -6.2959 -1.6776 17 7 1.4081 -7.3202 -3.6482 18 6 2.1026 -7.8193 -4.8457 19 6 1.5893 -9.2378 -5.1408 20 8 0.1610 -9.2172 -5.1982 21 6 -0.4687 -8.8406 -3.9713 22 6 -0.0604 -7.4069 -3.6138 23 6 3.6336 -5.1888 0.7126 24 6 4.3611 -5.9148 1.6522 25 6 4.2482 -5.6052 2.9899 26 6 3.4104 -4.5790 3.4024 27 6 2.6891 -3.8491 2.4829 28 6 2.7890 -4.1472 1.1278 29 1 -0.4851 0.8400 0.0004 30 1 0.6249 -2.5564 -0.8920 31 1 0.6241 -2.5575 0.8880 32 1 2.3266 -4.0378 -2.1218 33 1 5.2671 -6.3344 -1.5522 34 1 4.0377 -7.3594 -3.3956 35 1 1.8909 -7.1658 -5.6919 36 1 3.1767 -7.8471 -4.6623 37 1 1.9122 -9.9164 -4.3511 38 1 1.9873 -9.5767 -6.0973 39 1 -0.1533 -9.5177 -3.1774 40 1 -1.5514 -8.8931 -4.0857 41 1 -0.4195 -7.1613 -2.6143 42 1 -0.4863 -6.7120 -4.3377 43 1 5.0108 -6.7167 1.3339 44 1 4.8107 -6.1665 3.7211 45 1 3.3258 -4.3475 4.4540 46 1 2.0431 -3.0496 2.8144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096571188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:13 Heat of formation + Delta-G solvation = 17.939146 kcal Electronic energy + Delta-G solvation = -29303.398547 eV Core-core repulsion = 25352.690013 eV Total energy + Delta-G solvation = -3950.708534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.75165 -40.14972 -38.36119 -36.39578 -34.78951 -34.03830 -33.00217 -31.70004 -30.80844 -29.53244 -28.38136 -27.86486 -26.51072 -24.65850 -23.69732 -22.92809 -22.03453 -21.31802 -20.58905 -19.44751 -18.24869 -17.45548 -16.75499 -16.53932 -16.08556 -15.94177 -15.55530 -15.32193 -15.13925 -14.99054 -14.66887 -14.43490 -14.06477 -13.58813 -13.49263 -13.19794 -13.17084 -12.97489 -12.60773 -12.36108 -12.26412 -11.91338 -11.73474 -11.60281 -11.52248 -11.26088 -11.15226 -10.93539 -10.82091 -10.73096 -10.40524 -10.36249 -10.20310 -9.87317 -9.37458 -9.26737 -8.68613 -8.62213 -8.48852 -7.41299 -6.64528 -6.25392 -4.37907 1.22149 1.88366 2.33300 2.98651 3.18175 3.24802 3.29198 3.48851 3.57050 3.71233 3.88244 4.27430 4.52145 4.57256 4.70737 4.77254 4.87137 5.02130 5.04498 5.05024 5.24385 5.31425 5.35276 5.36924 5.49909 5.52988 5.56913 5.59095 5.68982 5.79151 5.83258 6.04748 6.18049 6.22431 6.39966 6.44543 6.50057 6.63314 6.68709 6.83089 6.87698 7.00231 7.09056 7.17045 7.43524 7.52006 7.54590 7.63750 7.85471 8.10639 8.16985 8.49776 8.70161 9.29791 10.78408 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010261 B = 0.003435 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.104368 B = 8150.124980 C = 9869.851284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.234 3.766 10 N -0.437 5.437 11 C 0.169 3.831 12 C -0.228 4.228 13 C 0.079 3.921 14 C -0.286 4.286 15 C 0.552 3.448 16 O -0.520 6.520 17 N -0.625 5.625 18 C 0.074 3.926 19 C 0.046 3.954 20 O -0.383 6.383 21 C 0.049 3.951 22 C 0.079 3.921 23 C -0.077 4.077 24 C -0.093 4.093 25 C -0.150 4.150 26 C -0.127 4.127 27 C -0.103 4.103 28 C 0.097 3.903 29 H 0.268 0.732 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.153 0.847 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.103 0.897 39 H 0.054 0.946 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.115 0.885 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 -17.227 -7.219 19.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.581 4.581 8 H 0.083 0.917 9 C 0.116 3.884 10 N -0.111 5.111 11 C 0.033 3.967 12 C -0.235 4.235 13 C 0.058 3.942 14 C -0.307 4.307 15 C 0.346 3.654 16 O -0.397 6.397 17 N -0.362 5.362 18 C -0.050 4.050 19 C -0.031 4.031 20 O -0.301 6.301 21 C -0.029 4.029 22 C -0.044 4.044 23 C -0.081 4.081 24 C -0.112 4.112 25 C -0.169 4.169 26 C -0.147 4.147 27 C -0.123 4.123 28 C -0.010 4.010 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.170 0.830 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.074 0.926 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.089 0.911 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.133 0.867 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.564 -16.558 -6.833 18.485 hybrid contribution 0.459 1.016 -0.050 1.116 sum 5.023 -15.542 -6.883 17.725 Atomic orbital electron populations 1.69927 1.06091 1.27675 1.49034 1.24948 0.94934 0.99516 0.94331 0.86382 0.79838 0.82261 0.78404 1.20321 1.20843 1.19559 1.21362 0.93736 0.89840 1.53118 0.91672 1.19742 0.87113 0.81936 0.99643 1.44552 1.35319 1.27717 1.03559 1.21704 0.91754 0.91837 0.91429 1.18543 1.09443 1.04301 0.91207 1.21674 0.97709 0.86536 0.88243 1.21762 0.93625 1.10386 1.04943 1.17234 0.88791 0.77841 0.81542 1.90993 1.71168 1.43708 1.33872 1.48176 1.06497 1.63637 1.17864 1.22504 0.98469 0.95566 0.88428 1.23067 0.81672 0.95754 1.02639 1.87941 1.18847 1.89194 1.34120 1.23002 0.98411 0.94702 0.86740 1.22167 0.80989 0.96974 1.04276 1.18891 0.99633 0.97437 0.92123 1.20208 0.99577 0.99324 0.92094 1.20683 1.01479 0.99626 0.95119 1.20607 0.98607 0.97154 0.98305 1.20170 1.01551 1.00750 0.89808 1.18195 0.97886 0.96078 0.88797 0.92251 0.93511 0.93642 0.82983 0.85949 0.85893 0.90770 0.88379 0.92640 0.87918 0.92734 0.87798 0.88037 0.91054 0.87220 0.87026 0.86663 0.86173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -14.82 9.39 -34.44 -0.32 -15.15 16 8 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.23 6.02 5.71 -5.19 -0.03 5.99 16 10 N -0.44 -10.17 2.73 -115.37 -0.31 -10.48 16 11 C 0.17 3.54 8.35 -16.45 -0.14 3.41 16 12 C -0.23 -4.30 4.63 -103.41 -0.48 -4.78 16 13 C 0.08 1.13 10.16 -37.30 -0.38 0.75 16 14 C -0.29 -3.69 9.20 -39.34 -0.36 -4.05 16 15 C 0.55 8.46 7.09 -15.02 -0.11 8.35 16 16 O -0.52 -10.20 11.85 5.11 0.06 -10.14 16 17 N -0.62 -7.78 3.01 -175.47 -0.53 -8.31 16 18 C 0.07 0.65 6.57 -3.32 -0.02 0.63 16 19 C 0.05 0.37 7.00 37.52 0.26 0.63 16 20 O -0.38 -3.99 10.74 -35.23 -0.38 -4.37 16 21 C 0.05 0.48 6.99 37.31 0.26 0.74 16 22 C 0.08 0.94 6.62 -3.53 -0.02 0.92 16 23 C -0.08 -1.53 6.36 -104.93 -0.67 -2.20 16 24 C -0.09 -1.60 10.09 -39.38 -0.40 -2.00 16 25 C -0.15 -2.41 10.03 -39.56 -0.40 -2.81 16 26 C -0.13 -2.19 10.01 -39.56 -0.40 -2.59 16 27 C -0.10 -2.10 9.97 -39.42 -0.39 -2.49 16 28 C 0.10 2.15 6.79 -83.96 -0.57 1.58 16 29 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.05 1.25 8.11 -51.93 -0.42 0.83 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.15 3.04 7.89 -52.49 -0.41 2.63 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.12 1.13 5.83 -52.48 -0.31 0.82 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.68 5.40 -51.93 -0.28 0.40 16 37 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.10 1.39 7.12 -51.93 -0.37 1.02 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 46 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 380.62 15.07 5.74 5.74 Total: -1.00 -32.49 380.62 -10.38 -42.86 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.41 Total: 4.50 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -4.26 Total: -11.36 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.11 Total: -43.22 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.32 Total: -14.51 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.49 -10.38 -42.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096571188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.804 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds