Wall clock time and date at job start Tue Mar 31 2020 05:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99640 * 2 1 4 4 H 1.48501 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47072 * 299.99832 * 3 2 1 6 6 H 1.48498 * 109.47454 * 59.99405 * 3 2 1 7 7 C 1.37878 * 120.00645 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00066 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99532 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46574 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99542 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00340 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.99549 * 180.02562 * 11 10 9 14 14 O 1.42902 * 109.46801 * 180.02562 * 13 11 10 15 15 C 1.34938 * 117.00185 * 180.02562 * 14 13 11 16 16 O 1.21650 * 119.99608 * 359.97438 * 15 14 13 17 17 C 1.41760 * 120.00355 * 179.97438 * 15 14 13 18 18 C 1.35229 * 120.00064 * 173.15384 * 17 15 14 19 19 C 1.46691 * 120.00226 * 349.63498 * 18 17 15 20 20 C 1.39228 * 120.67687 * 314.52529 * 19 18 17 21 21 C 1.38677 * 120.61902 * 179.76055 * 20 19 18 22 22 C 1.36248 * 121.74780 * 0.52837 * 21 20 19 23 23 C 1.40394 * 120.67670 * 359.73377 * 22 21 20 24 24 C 1.40796 * 121.41872 * 179.97438 * 23 22 21 25 25 C 1.36649 * 118.12821 * 180.02562 * 24 23 22 26 26 C 1.39219 * 119.95514 * 0.02562 * 25 24 23 27 27 N 1.31297 * 121.66847 * 359.97438 * 26 25 24 28 28 C 1.33155 * 121.28352 * 0.02562 * 27 26 25 29 29 H 0.96993 * 120.00409 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46905 * 60.00796 * 9 7 2 31 31 H 1.08994 * 109.47038 * 300.00237 * 9 7 2 32 32 H 0.96996 * 120.00071 * 0.02562 * 10 9 7 33 33 H 1.08993 * 109.47275 * 60.00483 * 13 11 10 34 34 H 1.09001 * 109.47164 * 299.99844 * 13 11 10 35 35 H 1.08003 * 119.99408 * 353.15144 * 17 15 14 36 36 H 1.07999 * 119.99856 * 169.63429 * 18 17 15 37 37 H 1.07998 * 119.69075 * 359.97438 * 20 19 18 38 38 H 1.07999 * 119.12555 * 180.25879 * 21 20 19 39 39 H 1.07993 * 119.66112 * 179.75768 * 22 21 20 40 40 H 1.08004 * 120.93320 * 0.02562 * 24 23 22 41 41 H 1.08001 * 120.02360 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.16116 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 7 2.2033 -3.6125 0.0027 11 6 1.7541 -4.8833 0.0033 12 8 0.5618 -5.1050 0.0026 13 6 2.7336 -6.0286 0.0049 14 8 2.0192 -7.2662 0.0047 15 6 2.7541 -8.3979 0.0066 16 8 3.9689 -8.3341 0.0079 17 6 2.1107 -9.6611 0.0070 18 6 2.8400 -10.7915 -0.1307 19 6 4.2556 -10.7098 -0.5063 20 6 4.6695 -9.8720 -1.5385 21 6 6.0088 -9.7921 -1.8893 22 6 6.9618 -10.5292 -1.2531 23 6 6.6148 -11.3988 -0.2069 24 6 7.5867 -12.1681 0.4608 25 6 7.1742 -12.9929 1.4692 26 6 5.8255 -13.0547 1.8091 27 7 4.9233 -12.3350 1.1831 28 6 5.2610 -11.5123 0.1920 29 1 -0.4850 0.8399 0.0004 30 1 0.6243 -2.5575 -0.8881 31 1 0.6249 -2.5563 0.8919 32 1 3.1569 -3.4352 0.0029 33 1 3.3595 -5.9702 0.8953 34 1 3.3609 -5.9715 -0.8846 35 1 1.0379 -9.7205 0.1174 36 1 2.3802 -11.7544 0.0359 37 1 3.9412 -9.2763 -2.0685 38 1 6.3036 -9.1311 -2.6909 39 1 7.9947 -10.4435 -1.5566 40 1 8.6289 -12.1081 0.1838 41 1 7.8938 -13.5971 2.0017 42 1 5.5137 -13.7106 2.6084 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096973071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:47 Heat of formation + Delta-G solvation = -35.331935 kcal Electronic energy + Delta-G solvation = -27265.175597 eV Core-core repulsion = 23176.323962 eV Total energy + Delta-G solvation = -4088.851636 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.17069 -40.55888 -38.81248 -37.54111 -36.38696 -34.64536 -34.23216 -32.83931 -32.40079 -30.84409 -29.94651 -28.93546 -26.79442 -25.10608 -24.16724 -23.78340 -22.60265 -21.85216 -19.98146 -19.73614 -18.46539 -18.16847 -17.50349 -17.14353 -16.94399 -16.59995 -15.95774 -15.52565 -15.11300 -15.07456 -14.74887 -14.50774 -14.43563 -14.37746 -13.95041 -13.77919 -13.36077 -13.25849 -12.99281 -12.83584 -12.42093 -12.17734 -11.99849 -11.85464 -11.74811 -11.67963 -11.08791 -10.98605 -10.94082 -10.57769 -10.37354 -10.34712 -9.96132 -9.78747 -9.42147 -9.15196 -8.98210 -8.78520 -8.08679 -7.97657 -6.19681 -4.26982 -0.20808 0.56681 0.79941 1.76819 2.65480 2.70596 2.90194 3.20743 3.22240 3.29358 3.32446 3.75283 3.92580 4.06594 4.14729 4.34111 4.37670 4.48930 4.56641 4.66061 4.84364 4.87147 4.99773 5.04507 5.14958 5.16482 5.22881 5.27957 5.35376 5.37781 5.60848 5.63027 5.67291 5.78980 5.85983 6.09653 6.17770 6.20483 6.41997 6.52649 7.23601 7.32507 7.46452 7.60065 7.60427 7.76654 7.92174 8.51418 8.72062 8.98072 9.39442 10.90506 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021009 B = 0.001881 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.467963 B =14883.041149 C =15533.673369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.707 5.707 11 C 0.500 3.500 12 O -0.534 6.534 13 C 0.049 3.951 14 O -0.323 6.323 15 C 0.493 3.507 16 O -0.506 6.506 17 C -0.202 4.202 18 C 0.022 3.978 19 C -0.062 4.062 20 C -0.023 4.023 21 C -0.115 4.115 22 C -0.088 4.088 23 C -0.108 4.108 24 C -0.053 4.053 25 C -0.184 4.184 26 C 0.130 3.870 27 N -0.476 5.476 28 C 0.150 3.850 29 H 0.266 0.734 30 H 0.030 0.970 31 H 0.029 0.971 32 H 0.393 0.607 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.786 -28.250 -1.259 32.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.357 5.357 11 C 0.282 3.718 12 O -0.412 6.412 13 C -0.029 4.029 14 O -0.238 6.238 15 C 0.340 3.660 16 O -0.398 6.398 17 C -0.221 4.221 18 C 0.003 3.997 19 C -0.063 4.063 20 C -0.042 4.042 21 C -0.133 4.133 22 C -0.106 4.106 23 C -0.110 4.110 24 C -0.079 4.079 25 C -0.204 4.204 26 C -0.041 4.041 27 N -0.184 5.184 28 C 0.027 3.973 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.225 0.775 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 14.158 -28.173 -1.087 31.549 hybrid contribution 1.938 1.265 -0.066 2.315 sum 16.096 -26.909 -1.153 31.376 Atomic orbital electron populations 1.69979 1.06109 1.27295 1.48784 1.24960 0.94939 0.99507 0.94642 0.86337 0.79808 0.82845 0.77773 1.19617 1.20772 1.20765 1.21249 0.93362 0.90306 1.53355 0.91724 1.19176 0.88187 0.81578 0.98021 1.46363 1.11470 1.05399 1.72505 1.19927 0.89127 0.84004 0.78693 1.90704 1.16363 1.84557 1.49556 1.22428 0.94536 0.81668 1.04243 1.86288 1.40183 1.13908 1.83388 1.20255 0.86084 0.85833 0.73781 1.90969 1.14676 1.87997 1.46141 1.21446 1.01963 0.89182 1.09511 1.22322 0.91141 0.98304 0.87892 1.19640 0.91993 0.97679 0.97016 1.21210 0.96182 0.92382 0.94457 1.20679 0.92708 0.99428 1.00451 1.20947 0.99810 0.95361 0.94527 1.18703 0.93905 0.99648 0.98732 1.21499 0.99278 0.93225 0.93873 1.21844 0.97746 1.01319 0.99477 1.22965 0.89209 0.95002 0.96916 1.67781 1.37675 1.06047 1.06918 1.19672 0.90595 0.94018 0.93045 0.92425 0.95250 0.95275 0.77461 0.88924 0.88932 0.83145 0.83226 0.85746 0.85354 0.85386 0.84425 0.84587 0.82406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.25 6.61 5.43 -5.19 -0.03 6.58 16 10 N -0.71 -14.84 5.55 -61.47 -0.34 -15.18 16 11 C 0.50 10.22 7.91 -10.98 -0.09 10.13 16 12 O -0.53 -13.30 16.50 -14.35 -0.24 -13.54 16 13 C 0.05 0.77 5.86 36.01 0.21 0.98 16 14 O -0.32 -5.25 9.64 -47.91 -0.46 -5.71 16 15 C 0.49 6.87 6.84 32.08 0.22 7.08 16 16 O -0.51 -7.52 11.82 -19.38 -0.23 -7.75 16 17 C -0.20 -2.21 9.87 -39.31 -0.39 -2.60 16 18 C 0.02 0.22 9.50 -37.24 -0.35 -0.14 16 19 C -0.06 -0.71 4.62 -102.85 -0.47 -1.19 16 20 C -0.02 -0.24 6.66 -39.05 -0.26 -0.50 16 21 C -0.11 -1.06 9.88 -40.14 -0.40 -1.46 16 22 C -0.09 -0.76 9.72 -39.49 -0.38 -1.14 16 23 C -0.11 -1.07 5.74 -106.84 -0.61 -1.68 16 24 C -0.05 -0.39 9.90 -39.19 -0.39 -0.78 16 25 C -0.18 -1.21 10.02 -39.79 -0.40 -1.61 16 26 C 0.13 1.04 11.15 -17.42 -0.19 0.84 16 27 N -0.48 -5.24 9.93 -9.55 -0.09 -5.34 16 28 C 0.15 1.74 6.77 -82.74 -0.56 1.18 16 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.39 6.93 8.32 -40.82 -0.34 6.60 16 33 H 0.09 1.30 8.13 -51.93 -0.42 0.88 16 34 H 0.09 1.24 8.13 -51.93 -0.42 0.82 16 35 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.12 1.28 7.15 -52.49 -0.38 0.90 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 41 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 42 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -35.95 372.49 -9.45 -45.39 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -4.90 Total: 3.60 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -4.51 Total: 2.37 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.30 Total: -45.72 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.93 Total: -27.00 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.95 -9.45 -45.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096973071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.060 kcal (2) G-P(sol) polarization free energy of solvation -35.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds