Wall clock time and date at job start Tue Mar 31 2020 05:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99640 * 2 1 4 4 H 1.48501 * 109.47187 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47072 * 299.99832 * 3 2 1 6 6 H 1.48498 * 109.47454 * 59.99405 * 3 2 1 7 7 C 1.37878 * 120.00645 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00066 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99532 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46574 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99542 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00340 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.99549 * 180.02562 * 11 10 9 14 14 O 1.42902 * 109.46801 * 180.02562 * 13 11 10 15 15 C 1.34938 * 117.00185 * 180.02562 * 14 13 11 16 16 O 1.21650 * 119.99608 * 359.97438 * 15 14 13 17 17 C 1.41760 * 120.00355 * 179.97438 * 15 14 13 18 18 C 1.35229 * 120.00064 * 173.15384 * 17 15 14 19 19 C 1.46691 * 120.00226 * 349.63498 * 18 17 15 20 20 C 1.39228 * 120.67687 * 314.52529 * 19 18 17 21 21 C 1.38677 * 120.61902 * 179.76055 * 20 19 18 22 22 C 1.36248 * 121.74780 * 0.52837 * 21 20 19 23 23 C 1.40394 * 120.67670 * 359.73377 * 22 21 20 24 24 C 1.40796 * 121.41872 * 179.97438 * 23 22 21 25 25 C 1.36649 * 118.12821 * 180.02562 * 24 23 22 26 26 C 1.39219 * 119.95514 * 0.02562 * 25 24 23 27 27 N 1.31297 * 121.66847 * 359.97438 * 26 25 24 28 28 C 1.33155 * 121.28352 * 0.02562 * 27 26 25 29 29 H 0.96993 * 120.00409 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.46905 * 60.00796 * 9 7 2 31 31 H 1.08994 * 109.47038 * 300.00237 * 9 7 2 32 32 H 0.96996 * 120.00071 * 0.02562 * 10 9 7 33 33 H 1.08993 * 109.47275 * 60.00483 * 13 11 10 34 34 H 1.09001 * 109.47164 * 299.99844 * 13 11 10 35 35 H 1.08003 * 119.99408 * 353.15144 * 17 15 14 36 36 H 1.07999 * 119.99856 * 169.63429 * 18 17 15 37 37 H 1.07998 * 119.69075 * 359.97438 * 20 19 18 38 38 H 1.07999 * 119.12555 * 180.25879 * 21 20 19 39 39 H 1.07993 * 119.66112 * 179.75768 * 22 21 20 40 40 H 1.08004 * 120.93320 * 0.02562 * 24 23 22 41 41 H 1.08001 * 120.02360 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.16116 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 7 2.2033 -3.6125 0.0027 11 6 1.7541 -4.8833 0.0033 12 8 0.5618 -5.1050 0.0026 13 6 2.7336 -6.0286 0.0049 14 8 2.0192 -7.2662 0.0047 15 6 2.7541 -8.3979 0.0066 16 8 3.9689 -8.3341 0.0079 17 6 2.1107 -9.6611 0.0070 18 6 2.8400 -10.7915 -0.1307 19 6 4.2556 -10.7098 -0.5063 20 6 4.6695 -9.8720 -1.5385 21 6 6.0088 -9.7921 -1.8893 22 6 6.9618 -10.5292 -1.2531 23 6 6.6148 -11.3988 -0.2069 24 6 7.5867 -12.1681 0.4608 25 6 7.1742 -12.9929 1.4692 26 6 5.8255 -13.0547 1.8091 27 7 4.9233 -12.3350 1.1831 28 6 5.2610 -11.5123 0.1920 29 1 -0.4850 0.8399 0.0004 30 1 0.6243 -2.5575 -0.8881 31 1 0.6249 -2.5563 0.8919 32 1 3.1569 -3.4352 0.0029 33 1 3.3595 -5.9702 0.8953 34 1 3.3609 -5.9715 -0.8846 35 1 1.0379 -9.7205 0.1174 36 1 2.3802 -11.7544 0.0359 37 1 3.9412 -9.2763 -2.0685 38 1 6.3036 -9.1311 -2.6909 39 1 7.9947 -10.4435 -1.5566 40 1 8.6289 -12.1081 0.1838 41 1 7.8938 -13.5971 2.0017 42 1 5.5137 -13.7106 2.6084 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096973071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:46 Heat of formation + Delta-G solvation = -58.179386 kcal Electronic energy + Delta-G solvation = -27266.166337 eV Core-core repulsion = 23176.323962 eV Total energy + Delta-G solvation = -4089.842376 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.07761 -41.43436 -40.43295 -38.44924 -37.36001 -36.19847 -35.42493 -34.42956 -33.51838 -31.46909 -31.08450 -30.14837 -28.54587 -26.00382 -25.00383 -24.48340 -24.34750 -22.74121 -21.67055 -20.73172 -19.25454 -19.11518 -19.03601 -18.06382 -17.82608 -17.74054 -17.48258 -17.03096 -16.61718 -16.21523 -15.93735 -15.62199 -15.48610 -15.11899 -14.94197 -14.56329 -14.50731 -14.43608 -14.11520 -13.92621 -13.83656 -13.67313 -13.46913 -12.93218 -12.88557 -12.76244 -12.56673 -12.30468 -12.23437 -11.85495 -11.78716 -11.48208 -11.26535 -10.91322 -10.84241 -10.68133 -10.41907 -9.94672 -9.65362 -8.81246 -8.30674 -6.47430 -0.91460 -0.09914 0.06626 1.07625 1.39948 1.44337 1.45958 1.53599 1.58450 1.94116 2.06799 2.34954 2.65934 3.04459 3.09993 3.30071 3.48466 3.68377 3.81853 3.87174 3.92645 4.03297 4.05576 4.06713 4.08400 4.23451 4.35964 4.48548 4.56824 4.70511 4.90345 5.00441 5.04914 5.06814 5.12693 5.16562 5.20298 5.29511 5.40835 5.44347 5.49864 5.61626 5.62148 5.80818 5.90554 6.61067 6.65429 6.78978 6.97365 7.19185 7.34441 8.81710 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021009 B = 0.001881 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.467963 B =14883.041149 C =15533.673369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.699 5.699 11 C 0.499 3.501 12 O -0.585 6.585 13 C 0.063 3.937 14 O -0.346 6.346 15 C 0.495 3.505 16 O -0.518 6.518 17 C -0.222 4.222 18 C 0.044 3.956 19 C -0.094 4.094 20 C -0.031 4.031 21 C -0.133 4.133 22 C -0.080 4.080 23 C -0.131 4.131 24 C -0.054 4.054 25 C -0.181 4.181 26 C 0.125 3.875 27 N -0.510 5.510 28 C 0.126 3.874 29 H 0.269 0.731 30 H -0.007 1.007 31 H -0.009 1.009 32 H 0.412 0.588 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.120 0.880 38 H 0.147 0.853 39 H 0.159 0.841 40 H 0.170 0.830 41 H 0.172 0.828 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.559 -29.277 -0.970 35.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.143 3.857 10 N -0.350 5.350 11 C 0.285 3.715 12 O -0.465 6.465 13 C -0.014 4.014 14 O -0.262 6.262 15 C 0.344 3.656 16 O -0.410 6.410 17 C -0.241 4.241 18 C 0.025 3.975 19 C -0.095 4.095 20 C -0.051 4.051 21 C -0.151 4.151 22 C -0.099 4.099 23 C -0.133 4.133 24 C -0.080 4.080 25 C -0.200 4.200 26 C -0.046 4.046 27 N -0.219 5.219 28 C 0.003 3.997 29 H 0.078 0.922 30 H 0.011 0.989 31 H 0.009 0.991 32 H 0.248 0.752 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.183 0.817 36 H 0.188 0.812 37 H 0.138 0.862 38 H 0.164 0.836 39 H 0.176 0.824 40 H 0.187 0.813 41 H 0.189 0.811 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 17.989 -29.232 -0.801 34.332 hybrid contribution 0.848 1.378 -0.118 1.622 sum 18.836 -27.854 -0.919 33.638 Atomic orbital electron populations 1.70137 1.08254 1.28589 1.49861 1.26077 0.95807 1.03937 0.93840 0.85086 0.79074 0.77227 0.77664 1.17611 1.20437 1.20503 1.21638 0.94426 0.90360 1.52985 0.89580 1.18640 0.88596 0.83850 0.94572 1.46046 1.11691 1.04742 1.72531 1.20745 0.89294 0.84758 0.76699 1.90678 1.18985 1.85327 1.51521 1.22259 0.92703 0.79876 1.06585 1.86283 1.41302 1.14511 1.84075 1.20658 0.86015 0.85724 0.73225 1.90959 1.15049 1.87949 1.47049 1.21509 1.02775 0.88072 1.11750 1.22590 0.90797 0.98769 0.85307 1.19879 0.92681 0.98884 0.98097 1.21323 0.96988 0.92213 0.94532 1.20943 0.92322 1.00364 1.01430 1.21327 1.01113 0.94000 0.93433 1.19058 0.93976 1.00679 0.99620 1.21927 1.00308 0.92320 0.93425 1.22246 0.97732 1.00972 0.99060 1.23587 0.89882 0.94301 0.96796 1.67773 1.39094 1.07251 1.07776 1.19904 0.91511 0.94588 0.93713 0.92184 0.98917 0.99064 0.75153 0.86750 0.86088 0.81684 0.81181 0.86243 0.83573 0.82386 0.81299 0.81081 0.79814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.99 42.17 29.54 68.60 2.03 44.20 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.56 -30.10 9.28 25.60 0.24 -29.86 16 8 H 0.09 4.19 7.60 -2.91 -0.02 4.16 16 9 C 0.27 14.60 5.43 85.63 0.46 15.06 16 10 N -0.70 -29.66 5.55 -466.78 -2.59 -32.25 16 11 C 0.50 20.80 7.91 87.66 0.69 21.49 16 12 O -0.58 -30.41 16.50 16.02 0.26 -30.15 16 13 C 0.06 1.94 5.86 71.24 0.42 2.35 16 14 O -0.35 -11.31 9.64 -52.07 -0.50 -11.81 16 15 C 0.49 13.82 6.84 68.69 0.47 14.29 16 16 O -0.52 -15.24 11.82 19.35 0.23 -15.01 16 17 C -0.22 -4.90 9.87 22.45 0.22 -4.68 16 18 C 0.04 0.87 9.50 23.79 0.23 1.10 16 19 C -0.09 -2.16 4.62 -18.72 -0.09 -2.25 16 20 C -0.03 -0.67 6.66 22.61 0.15 -0.52 16 21 C -0.13 -2.33 9.88 21.91 0.22 -2.12 16 22 C -0.08 -1.24 9.72 22.33 0.22 -1.03 16 23 C -0.13 -2.39 5.74 -21.30 -0.12 -2.52 16 24 C -0.05 -0.64 9.90 22.52 0.22 -0.41 16 25 C -0.18 -1.80 10.02 22.13 0.22 -1.58 16 26 C 0.12 1.74 11.15 85.01 0.95 2.69 16 27 N -0.51 -10.82 9.93 -184.11 -1.83 -12.65 16 28 C 0.13 2.84 6.77 41.89 0.28 3.13 16 29 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 30 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 32 H 0.41 14.13 8.32 -92.71 -0.77 13.36 16 33 H 0.11 3.04 8.13 -2.39 -0.02 3.02 16 34 H 0.12 3.04 8.13 -2.39 -0.02 3.02 16 35 H 0.17 3.01 8.06 -2.91 -0.02 2.98 16 36 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.12 2.53 7.15 -2.91 -0.02 2.51 16 38 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 39 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 40 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 41 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 42 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -81.79 372.49 3.42 -78.37 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: 0.29 Total: 19.20 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 5.24 Total: 15.79 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -4.13 Total: -100.59 kcal Atomic # 8 Polarization: -56.96 SS G_CDS: -0.01 Total: -56.97 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -81.79 3.42 -78.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096973071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.191 kcal (2) G-P(sol) polarization free energy of solvation -81.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds