Wall clock time and date at job start Tue Mar 31 2020 05:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34285 * 126.44822 * 2 1 4 4 C 1.34483 * 108.17574 * 180.27568 * 3 2 1 5 5 C 1.47867 * 125.47992 * 179.74636 * 4 3 2 6 6 C 1.39565 * 120.13912 * 359.75416 * 5 4 3 7 7 C 1.37954 * 119.85257 * 179.71743 * 6 5 4 8 8 C 1.38375 * 120.14065 * 0.55487 * 7 6 5 9 9 C 1.38333 * 120.28739 * 359.71879 * 8 7 6 10 10 C 1.50699 * 119.92855 * 179.97438 * 9 8 7 11 11 F 1.39907 * 109.46591 * 270.02230 * 10 9 8 12 12 F 1.39892 * 109.47113 * 30.01729 * 10 9 8 13 13 F 1.39902 * 109.47220 * 150.02600 * 10 9 8 14 14 C 1.37992 * 120.14205 * 0.02562 * 9 8 7 15 15 N 1.30900 * 109.03731 * 359.75278 * 4 3 2 16 16 C 1.35788 * 108.42547 * 359.97438 * 15 4 3 17 17 C 1.47366 * 126.37305 * 179.97438 * 16 15 4 18 18 O 1.21643 * 120.00018 * 180.02562 * 17 16 15 19 19 N 1.34777 * 119.99750 * 0.02562 * 17 16 15 20 20 C 1.36943 * 119.99651 * 179.72296 * 19 17 16 21 21 H 1.08002 * 119.99793 * 0.27704 * 20 19 17 22 22 C 1.38986 * 119.99792 * 180.27684 * 20 19 17 23 23 N 1.31404 * 120.00048 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00010 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.46907 * 59.99903 * 24 22 20 26 26 H 1.48494 * 109.47228 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47130 * 300.00315 * 24 22 20 28 28 H 1.08996 * 109.47534 * 270.13661 * 1 2 3 29 29 H 1.09000 * 109.47128 * 30.13945 * 1 2 3 30 30 H 1.09001 * 109.47351 * 150.13487 * 1 2 3 31 31 H 1.07999 * 120.07965 * 359.97438 * 6 5 4 32 32 H 1.08001 * 119.93194 * 180.25533 * 7 6 5 33 33 H 1.07990 * 119.85676 * 179.70315 * 8 7 6 34 34 H 1.08006 * 120.06924 * 179.97438 * 14 9 8 35 35 H 0.97001 * 120.00485 * 0.02562 * 19 17 16 36 36 H 0.96999 * 119.99869 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3048 1.0802 0.0000 4 6 3.5818 0.6585 -0.0061 5 6 4.7743 1.5328 -0.0136 6 6 4.6257 2.9206 -0.0199 7 6 5.7423 3.7307 -0.0209 8 6 7.0075 3.1702 -0.0273 9 6 7.1614 1.7954 -0.0269 10 6 8.5430 1.1936 -0.0345 11 9 8.9628 1.0066 -1.3559 12 9 9.4305 2.0551 0.6192 13 9 8.5182 -0.0395 0.6258 14 6 6.0527 0.9740 -0.0206 15 7 3.5993 -0.6503 -0.0046 16 6 2.3169 -1.0967 0.0032 17 6 1.8816 -2.5046 0.0069 18 8 0.6955 -2.7745 0.0136 19 7 2.7976 -3.4932 0.0029 20 6 2.3931 -4.8015 0.0121 21 1 1.3400 -5.0410 0.0180 22 6 3.3378 -5.8209 0.0138 23 7 4.6191 -5.5294 0.0071 24 14 2.7861 -7.6056 0.0255 25 1 1.9663 -7.8781 -1.1822 26 1 3.9774 -8.4920 0.0262 27 1 1.9758 -7.8652 1.2427 28 1 -0.3634 0.0025 1.0276 29 1 -0.3633 0.8887 -0.5160 30 1 -0.3634 -0.8912 -0.5117 31 1 3.6389 3.3593 -0.0197 32 1 5.6289 4.8047 -0.0216 33 1 7.8784 3.8087 -0.0330 34 1 6.1743 -0.0992 -0.0207 35 1 3.7435 -3.2780 -0.0020 36 1 5.2784 -6.2409 0.0079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097083142.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:51 Heat of formation + Delta-G solvation = -143.114259 kcal Electronic energy + Delta-G solvation = -28344.215517 eV Core-core repulsion = 23573.000254 eV Total energy + Delta-G solvation = -4771.215263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.28528 -47.80982 -47.72664 -43.04578 -39.60482 -38.02272 -34.53235 -34.16618 -33.10020 -32.12019 -31.38635 -30.92213 -27.06305 -26.30573 -25.30135 -23.90275 -22.45435 -22.17809 -21.02650 -19.63465 -18.62962 -18.57219 -18.45938 -17.86629 -16.84803 -16.66489 -16.58882 -15.67953 -15.28902 -14.90072 -14.67443 -14.64100 -14.46064 -14.22875 -14.10457 -13.93112 -13.88527 -13.74225 -13.52849 -13.33111 -13.26582 -12.91344 -12.75897 -12.60921 -12.19108 -11.88389 -11.63110 -11.57977 -11.20981 -11.00078 -10.51206 -10.43749 -10.25996 -9.85169 -9.60402 -9.55291 -8.66946 -8.16369 -8.03660 -6.54129 -3.89859 0.32505 0.71160 1.65017 2.38146 2.47026 2.64898 3.18359 3.21451 3.25331 3.30731 3.52230 3.78950 3.90543 4.09009 4.25198 4.26903 4.48849 4.59623 4.71128 4.78705 4.94447 5.06640 5.16840 5.27249 5.34822 5.53340 5.62905 5.73246 5.79828 5.85575 5.93581 5.97007 6.18070 6.28223 6.37904 6.63412 7.42836 7.74113 7.97071 8.50599 9.03185 9.43514 9.95250 10.61722 Molecular weight = 340.08amu Principal moments of inertia in cm(-1) A = 0.010264 B = 0.003450 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.400587 B = 8113.566621 C =10661.156164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.010 3.990 3 O -0.198 6.198 4 C 0.201 3.799 5 C 0.001 3.999 6 C -0.064 4.064 7 C -0.120 4.120 8 C -0.061 4.061 9 C -0.183 4.183 10 C 0.511 3.489 11 F -0.175 7.175 12 F -0.178 7.178 13 F -0.170 7.170 14 C -0.026 4.026 15 N -0.435 5.435 16 C -0.025 4.025 17 C 0.498 3.502 18 O -0.595 6.595 19 N -0.523 5.523 20 C -0.301 4.301 21 H 0.109 0.891 22 C 0.027 3.973 23 N -0.881 5.881 24 Si 0.937 3.063 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.271 1.271 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.116 0.884 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.156 0.844 35 H 0.403 0.597 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.543 19.836 -0.133 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.046 4.046 3 O -0.085 6.085 4 C -0.003 4.003 5 C 0.000 4.000 6 C -0.083 4.083 7 C -0.138 4.138 8 C -0.079 4.079 9 C -0.184 4.184 10 C 0.456 3.544 11 F -0.156 7.156 12 F -0.159 7.159 13 F -0.151 7.151 14 C -0.046 4.046 15 N -0.166 5.166 16 C -0.148 4.148 17 C 0.284 3.716 18 O -0.483 6.483 19 N -0.156 5.156 20 C -0.431 4.431 21 H 0.127 0.873 22 C -0.178 4.178 23 N -0.520 5.520 24 Si 0.763 3.237 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.196 1.196 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.134 0.866 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.174 0.826 35 H 0.238 0.762 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.535 19.111 -0.133 19.896 hybrid contribution 0.158 -0.429 0.032 0.459 sum 5.693 18.681 -0.102 19.530 Atomic orbital electron populations 1.20485 0.82583 1.04868 1.04137 1.23705 0.94868 0.82846 1.03168 1.84237 1.17124 1.36468 1.70659 1.23214 0.82536 0.89184 1.05384 1.17075 0.87580 0.90997 1.04346 1.21486 1.00303 0.91720 0.94797 1.21039 0.91105 1.00571 1.01067 1.21096 0.98928 0.92855 0.95067 1.19843 0.91680 0.95371 1.11553 1.18177 0.85890 0.76290 0.74001 1.93242 1.91436 1.95221 1.35708 1.93180 1.71243 1.70071 1.81452 1.93255 1.96710 1.44221 1.80905 1.21011 0.89403 1.01707 0.92451 1.71017 1.22868 1.07555 1.15116 1.22142 0.87208 0.97202 1.08212 1.16222 0.86201 0.81542 0.87594 1.90587 1.16004 1.82310 1.59368 1.41796 1.09047 1.05284 1.59426 1.19804 0.95123 0.80565 1.47637 0.87337 1.25434 0.94770 1.01082 0.96476 1.69642 1.00279 1.34785 1.47258 0.85827 0.77997 0.80614 0.79297 1.19587 1.20728 1.19592 0.89681 0.91128 0.86587 0.84139 0.84014 0.84232 0.82650 0.76237 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 9.87 36.01 0.36 -0.58 16 2 C 0.01 0.18 7.44 -34.99 -0.26 -0.08 16 3 O -0.20 -3.20 10.45 5.27 0.06 -3.15 16 4 C 0.20 3.37 7.88 -14.01 -0.11 3.26 16 5 C 0.00 0.02 5.87 -104.98 -0.62 -0.60 16 6 C -0.06 -0.61 9.71 -39.19 -0.38 -0.99 16 7 C -0.12 -0.89 10.03 -39.63 -0.40 -1.29 16 8 C -0.06 -0.51 9.39 -39.50 -0.37 -0.88 16 9 C -0.18 -2.01 5.45 -104.68 -0.57 -2.58 16 10 C 0.51 5.86 3.36 36.00 0.12 5.98 16 11 F -0.17 -2.11 17.30 2.25 0.04 -2.07 16 12 F -0.18 -1.88 16.45 2.25 0.04 -1.84 16 13 F -0.17 -2.26 16.46 2.25 0.04 -2.22 16 14 C -0.03 -0.35 9.03 -39.19 -0.35 -0.70 16 15 N -0.43 -8.81 10.65 -8.27 -0.09 -8.90 16 16 C -0.02 -0.54 6.99 -83.09 -0.58 -1.12 16 17 C 0.50 12.66 7.76 -12.55 -0.10 12.56 16 18 O -0.60 -15.91 14.36 5.24 0.08 -15.84 16 19 N -0.52 -14.11 5.28 -11.97 -0.06 -14.18 16 20 C -0.30 -8.44 9.68 -14.99 -0.15 -8.59 16 21 H 0.11 3.09 7.15 -52.49 -0.38 2.71 16 22 C 0.03 0.72 5.50 -17.46 -0.10 0.62 16 23 N -0.88 -24.14 13.05 55.50 0.72 -23.42 16 24 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.12 1.93 6.48 -51.93 -0.34 1.59 16 31 H 0.14 1.12 7.89 -52.49 -0.41 0.71 16 32 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.14 0.84 7.59 -52.49 -0.40 0.44 16 34 H 0.16 2.27 7.36 -52.48 -0.39 1.89 16 35 H 0.40 10.86 7.62 -40.82 -0.31 10.55 16 36 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -31.36 339.58 -5.22 -36.58 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -2.62 Total: 9.26 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -3.50 Total: 5.02 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.57 Total: -46.50 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.13 Total: -18.98 kcal Atomic # 9 Polarization: -6.25 SS G_CDS: 0.11 Total: -6.13 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.36 -5.22 -36.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097083142.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.532 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds