Wall clock time and date at job start Tue Mar 31 2020 06:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47494 * 2 1 4 4 H 1.09007 * 109.47265 * 55.00203 * 3 2 1 5 5 C 1.50701 * 109.46981 * 174.99411 * 3 2 1 6 6 H 1.08009 * 120.00056 * 120.00131 * 5 3 2 7 7 C 1.37875 * 120.00398 * 299.99880 * 5 3 2 8 8 N 1.31518 * 119.99952 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00166 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46783 * 60.00516 * 9 7 5 11 11 H 1.48496 * 109.47370 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47513 * 300.00706 * 9 7 5 13 13 N 1.46491 * 109.47204 * 294.99602 * 3 2 1 14 14 C 1.34778 * 120.00103 * 85.00174 * 13 3 2 15 15 O 1.21581 * 120.00082 * 0.02562 * 14 13 3 16 16 N 1.34776 * 120.00220 * 179.97438 * 14 13 3 17 17 C 1.39539 * 120.00277 * 185.31374 * 16 14 13 18 18 C 1.39136 * 119.91920 * 33.67723 * 17 16 14 19 19 C 1.37670 * 120.07901 * 180.30327 * 18 17 16 20 20 C 1.39793 * 119.91900 * 359.42140 * 19 18 17 21 21 C 1.43202 * 120.07776 * 180.30575 * 20 19 18 22 22 N 9.79349 * 69.49338 * 161.42692 * 3 1 2 23 23 C 1.39755 * 119.84435 * 0.28181 * 20 19 18 24 24 C 1.50694 * 120.04592 * 180.02562 * 23 20 19 25 25 F 1.39894 * 109.47697 * 180.02562 * 24 23 20 26 26 F 1.39908 * 109.46729 * 299.99929 * 24 23 20 27 27 F 1.39904 * 109.47351 * 59.99322 * 24 23 20 28 28 C 1.37715 * 119.91445 * 359.97438 * 23 20 19 29 29 H 1.08991 * 109.47372 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47110 * 300.00911 * 1 2 3 31 31 H 1.09007 * 109.46309 * 59.99860 * 1 2 3 32 32 H 1.09001 * 109.47110 * 239.99089 * 2 1 3 33 33 H 1.09007 * 109.46309 * 120.00140 * 2 1 3 34 34 H 0.96998 * 119.99629 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00089 * 265.00191 * 13 3 2 36 36 H 0.97002 * 119.99759 * 5.32355 * 16 14 13 37 37 H 1.07999 * 119.95730 * 0.02562 * 18 17 16 38 38 H 1.07998 * 120.03529 * 179.70299 * 19 18 17 39 39 H 1.08004 * 119.95798 * 179.97438 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4441 0.1240 6 1 4.1475 1.8886 -0.6522 7 6 4.1433 0.8782 1.2282 8 7 3.4061 0.3365 2.1731 9 14 6.0050 0.8797 1.3814 10 1 6.5005 2.2796 1.3811 11 1 6.3978 0.2154 2.6501 12 1 6.5967 0.1449 0.2346 13 7 1.6527 2.0973 -1.2518 14 6 0.4354 2.6644 -1.3670 15 8 -0.3409 2.6327 -0.4319 16 7 0.0792 3.2674 -2.5185 17 6 -1.1349 3.9501 -2.6020 18 6 -1.6346 4.6164 -1.4874 19 6 -2.8351 5.2857 -1.5644 20 6 -3.5465 5.3056 -2.7677 21 6 -4.7924 6.0063 -2.8533 22 7 -5.7810 6.5616 -2.9217 23 6 -3.0386 4.6404 -3.8869 24 6 -3.8013 4.6593 -5.1864 25 9 -3.0978 3.9299 -6.1508 26 9 -5.0623 4.0840 -4.9954 27 9 -3.9526 5.9811 -5.6192 28 6 -1.8395 3.9684 -3.8010 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3632 0.5139 -0.8901 32 1 1.8934 -0.5140 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 3.8292 -0.0620 2.9497 35 1 2.2722 2.1229 -1.9977 36 1 0.6668 3.2267 -3.2892 37 1 -1.0820 4.6047 -0.5596 38 1 -3.2246 5.7987 -0.6975 39 1 -1.4466 3.4538 -4.6654 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097096218.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:25 Heat of formation + Delta-G solvation = -120.991351 kcal Electronic energy + Delta-G solvation = -29065.656847 eV Core-core repulsion = 24365.808089 eV Total energy + Delta-G solvation = -4699.848758 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.46670 -47.98649 -47.91119 -40.77972 -39.19624 -36.85585 -35.63407 -34.53599 -32.69091 -32.26603 -31.25055 -29.99641 -27.06411 -26.62161 -24.04380 -23.09994 -22.76427 -20.99403 -19.73052 -19.68354 -18.85570 -18.78165 -18.46827 -18.31083 -16.71136 -16.06329 -15.89541 -15.27835 -15.00480 -14.93806 -14.82702 -14.53483 -14.42015 -14.36860 -14.17436 -14.06074 -14.04756 -13.86032 -13.55118 -13.21640 -12.95781 -12.87886 -12.77053 -12.48354 -12.27005 -11.72280 -11.65060 -11.35352 -11.09283 -10.93330 -10.51886 -10.44279 -10.30100 -9.84410 -9.68810 -9.50774 -9.17957 -8.62274 -8.44244 -7.99242 -6.23218 -4.33441 0.22522 0.72271 2.23620 2.35508 2.54992 2.80660 3.18383 3.24935 3.25435 3.28531 3.30542 3.55038 3.63996 3.70326 4.09465 4.21923 4.39421 4.63799 4.76932 4.92409 5.06585 5.09420 5.28003 5.44130 5.78726 5.90310 6.09150 6.30266 6.35905 6.53528 6.62041 6.77680 6.96626 7.16491 7.17076 7.19401 7.27927 7.52392 7.70096 7.79548 8.05946 8.52562 8.66467 8.97902 9.34268 10.81959 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.023427 B = 0.002384 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.914338 B =11740.587540 C =11987.570665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.130 4.130 3 C 0.286 3.714 4 H 0.052 0.948 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.712 5.712 14 C 0.691 3.309 15 O -0.570 6.570 16 N -0.693 5.693 17 C 0.221 3.779 18 C -0.095 4.095 19 C -0.043 4.043 20 C -0.015 4.015 21 C 0.244 3.756 22 N -0.398 5.398 23 C -0.118 4.118 24 C 0.506 3.494 25 F -0.172 7.172 26 F -0.172 7.172 27 F -0.173 7.173 28 C -0.114 4.114 29 H 0.022 0.978 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.031 0.969 33 H 0.100 0.900 34 H 0.266 0.734 35 H 0.388 0.612 36 H 0.409 0.591 37 H 0.161 0.839 38 H 0.148 0.852 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.285 7.306 -12.766 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.169 4.169 3 C 0.185 3.815 4 H 0.070 0.930 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.362 5.362 14 C 0.391 3.609 15 O -0.447 6.447 16 N -0.340 5.340 17 C 0.121 3.879 18 C -0.116 4.116 19 C -0.065 4.065 20 C -0.020 4.020 21 C -0.071 4.071 22 N -0.073 5.073 23 C -0.122 4.122 24 C 0.452 3.548 25 F -0.153 7.153 26 F -0.153 7.153 27 F -0.154 7.154 28 C -0.136 4.136 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.119 0.881 34 H 0.076 0.924 35 H 0.220 0.780 36 H 0.245 0.755 37 H 0.179 0.821 38 H 0.165 0.835 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.382 7.939 -11.757 17.579 hybrid contribution 1.847 -0.407 -0.900 2.095 sum -8.534 7.532 -12.657 17.022 Atomic orbital electron populations 1.21823 0.98209 0.98125 1.01192 1.21976 0.92712 0.99769 1.02426 1.18784 0.94170 0.88961 0.79604 0.93007 1.21152 0.90484 1.39555 1.06462 0.92076 1.24866 0.98682 0.94664 0.95317 1.69874 1.35339 1.37196 1.09337 0.86498 0.84653 0.78355 0.77542 1.20153 1.21087 1.20147 1.45908 1.12674 1.58126 1.19514 1.16116 0.83869 0.78863 0.82020 1.90933 1.51555 1.64269 1.37924 1.42964 1.19603 1.55540 1.15882 1.17544 0.86274 0.90539 0.93526 1.21522 0.96237 0.93843 0.99982 1.21084 0.93275 0.96701 0.95405 1.15512 0.90426 1.01314 0.94706 1.25523 0.92949 0.93942 0.94730 1.81232 1.10710 1.09034 1.06324 1.19563 0.97161 1.03746 0.91775 1.18223 0.77818 0.74072 0.84674 1.93185 1.78474 1.77681 1.65969 1.93253 1.42280 1.84612 1.95194 1.93246 1.95714 1.35540 1.90924 1.20568 0.93018 1.00811 0.99155 0.95847 0.93055 0.94400 0.94985 0.88140 0.92355 0.77951 0.75543 0.82128 0.83466 0.83189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.51 37.16 0.32 -2.47 16 2 C -0.13 -2.88 5.45 -26.73 -0.15 -3.03 16 3 C 0.29 6.42 2.24 -69.09 -0.15 6.26 16 4 H 0.05 1.36 7.58 -51.93 -0.39 0.96 16 5 C -0.54 -12.96 8.73 -34.44 -0.30 -13.26 16 6 H 0.06 1.40 7.74 -52.48 -0.41 0.99 16 7 C 0.07 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.88 -23.14 11.29 55.43 0.63 -22.52 16 9 Si 0.90 19.35 29.54 -169.99 -5.02 14.33 16 10 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 11 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 13 N -0.71 -12.33 5.03 -59.82 -0.30 -12.63 16 14 C 0.69 11.10 6.86 -86.92 -0.60 10.50 16 15 O -0.57 -10.96 11.17 5.29 0.06 -10.90 16 16 N -0.69 -7.73 5.33 -14.21 -0.08 -7.80 16 17 C 0.22 2.35 6.27 -83.70 -0.53 1.83 16 18 C -0.10 -1.05 8.62 -39.46 -0.34 -1.39 16 19 C -0.04 -0.41 9.75 -39.21 -0.38 -0.79 16 20 C -0.01 -0.15 5.72 -106.82 -0.61 -0.76 16 21 C 0.24 2.87 13.18 -22.47 -0.30 2.58 16 22 N -0.40 -5.42 18.54 41.84 0.78 -4.64 16 23 C -0.12 -1.16 5.40 -104.25 -0.56 -1.72 16 24 C 0.51 5.24 2.89 36.00 0.10 5.35 16 25 F -0.17 -1.64 15.97 2.25 0.04 -1.61 16 26 F -0.17 -2.00 16.52 2.25 0.04 -1.96 16 27 F -0.17 -1.91 16.52 2.25 0.04 -1.87 16 28 C -0.11 -1.02 9.33 -39.46 -0.37 -1.39 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 31 H 0.04 0.74 5.65 -51.93 -0.29 0.45 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 2.52 5.95 -51.93 -0.31 2.21 16 34 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 35 H 0.39 5.63 8.56 -40.82 -0.35 5.28 16 36 H 0.41 3.17 8.83 -40.82 -0.36 2.81 16 37 H 0.16 2.05 6.42 -52.49 -0.34 1.71 16 38 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.15 1.04 7.15 -52.48 -0.38 0.66 16 LS Contribution 347.82 15.07 5.24 5.24 Total: -1.00 -28.48 347.82 -6.17 -34.65 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -3.63 Total: 6.38 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -3.96 Total: 3.33 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 1.03 Total: -47.59 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.06 Total: -10.90 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.11 Total: -5.44 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.48 -6.17 -34.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096218.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.339 kcal (2) G-P(sol) polarization free energy of solvation -28.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds