Wall clock time and date at job start Tue Mar 31 2020 06:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47494 * 2 1 4 4 H 1.09007 * 109.47265 * 55.00203 * 3 2 1 5 5 C 1.50701 * 109.46981 * 174.99411 * 3 2 1 6 6 H 1.08009 * 120.00056 * 120.00131 * 5 3 2 7 7 C 1.37875 * 120.00398 * 299.99880 * 5 3 2 8 8 N 1.31518 * 119.99952 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00166 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46783 * 60.00516 * 9 7 5 11 11 H 1.48496 * 109.47370 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47513 * 300.00706 * 9 7 5 13 13 N 1.46491 * 109.47204 * 294.99602 * 3 2 1 14 14 C 1.34778 * 120.00103 * 85.00174 * 13 3 2 15 15 O 1.21581 * 120.00082 * 0.02562 * 14 13 3 16 16 N 1.34776 * 120.00220 * 179.97438 * 14 13 3 17 17 C 1.39539 * 120.00277 * 185.31374 * 16 14 13 18 18 C 1.39136 * 119.91920 * 33.67723 * 17 16 14 19 19 C 1.37670 * 120.07901 * 180.30327 * 18 17 16 20 20 C 1.39793 * 119.91900 * 359.42140 * 19 18 17 21 21 C 1.43202 * 120.07776 * 180.30575 * 20 19 18 22 22 N 9.79349 * 69.49338 * 161.42692 * 3 1 2 23 23 C 1.39755 * 119.84435 * 0.28181 * 20 19 18 24 24 C 1.50694 * 120.04592 * 180.02562 * 23 20 19 25 25 F 1.39894 * 109.47697 * 180.02562 * 24 23 20 26 26 F 1.39908 * 109.46729 * 299.99929 * 24 23 20 27 27 F 1.39904 * 109.47351 * 59.99322 * 24 23 20 28 28 C 1.37715 * 119.91445 * 359.97438 * 23 20 19 29 29 H 1.08991 * 109.47372 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47110 * 300.00911 * 1 2 3 31 31 H 1.09007 * 109.46309 * 59.99860 * 1 2 3 32 32 H 1.09001 * 109.47110 * 239.99089 * 2 1 3 33 33 H 1.09007 * 109.46309 * 120.00140 * 2 1 3 34 34 H 0.96998 * 119.99629 * 179.97438 * 8 7 5 35 35 H 0.96999 * 120.00089 * 265.00191 * 13 3 2 36 36 H 0.97002 * 119.99759 * 5.32355 * 16 14 13 37 37 H 1.07999 * 119.95730 * 0.02562 * 18 17 16 38 38 H 1.07998 * 120.03529 * 179.70299 * 19 18 17 39 39 H 1.08004 * 119.95798 * 179.97438 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4441 0.1240 6 1 4.1475 1.8886 -0.6522 7 6 4.1433 0.8782 1.2282 8 7 3.4061 0.3365 2.1731 9 14 6.0050 0.8797 1.3814 10 1 6.5005 2.2796 1.3811 11 1 6.3978 0.2154 2.6501 12 1 6.5967 0.1449 0.2346 13 7 1.6527 2.0973 -1.2518 14 6 0.4354 2.6644 -1.3670 15 8 -0.3409 2.6327 -0.4319 16 7 0.0792 3.2674 -2.5185 17 6 -1.1349 3.9501 -2.6020 18 6 -1.6346 4.6164 -1.4874 19 6 -2.8351 5.2857 -1.5644 20 6 -3.5465 5.3056 -2.7677 21 6 -4.7924 6.0063 -2.8533 22 7 -5.7810 6.5616 -2.9217 23 6 -3.0386 4.6404 -3.8869 24 6 -3.8013 4.6593 -5.1864 25 9 -3.0978 3.9299 -6.1508 26 9 -5.0623 4.0840 -4.9954 27 9 -3.9526 5.9811 -5.6192 28 6 -1.8395 3.9684 -3.8010 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3632 0.5139 -0.8901 32 1 1.8934 -0.5140 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 3.8292 -0.0620 2.9497 35 1 2.2722 2.1229 -1.9977 36 1 0.6668 3.2267 -3.2892 37 1 -1.0820 4.6047 -0.5596 38 1 -3.2246 5.7987 -0.6975 39 1 -1.4466 3.4538 -4.6654 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097096218.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:24 Heat of formation + Delta-G solvation = -137.537350 kcal Electronic energy + Delta-G solvation = -29066.374336 eV Core-core repulsion = 24365.808089 eV Total energy + Delta-G solvation = -4700.566246 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.29730 -48.79207 -48.77432 -41.83679 -40.29032 -37.93030 -37.05650 -35.75105 -34.31888 -33.17039 -32.78226 -31.09895 -28.79178 -27.46921 -25.33034 -24.44407 -23.75428 -22.27389 -21.32184 -20.54180 -19.97444 -19.62115 -19.49369 -19.29857 -18.09575 -17.39788 -17.07333 -16.68704 -16.13080 -15.89357 -15.78978 -15.76822 -15.44516 -15.22270 -15.10606 -15.04758 -14.89770 -14.88182 -14.73801 -14.48865 -14.31136 -14.04644 -13.78446 -13.58192 -13.41316 -13.32908 -13.11172 -12.85768 -12.61557 -12.52956 -12.14189 -12.01248 -11.62880 -11.42932 -11.10919 -10.97810 -10.48224 -10.38940 -9.70706 -9.22325 -8.11719 -6.27833 -0.64456 -0.05826 1.37259 1.41897 1.50087 1.50274 1.57503 1.61058 1.77564 2.23881 2.45192 2.46783 2.58193 2.67429 2.87124 3.18724 3.25910 3.42915 3.69293 3.94767 4.10814 4.14083 4.56106 4.57873 4.61982 4.65243 4.82354 4.96465 5.07072 5.12766 5.22538 5.33210 5.50279 5.59349 5.65551 5.69571 5.78832 5.91753 6.22396 6.23965 6.26169 6.80434 7.24751 7.40232 7.70952 8.93056 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.023427 B = 0.002384 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.914338 B =11740.587540 C =11987.570665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.123 4.123 3 C 0.298 3.702 4 H 0.006 0.994 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.964 3.036 10 H -0.272 1.272 11 H -0.291 1.291 12 H -0.266 1.266 13 N -0.711 5.711 14 C 0.694 3.306 15 O -0.603 6.603 16 N -0.673 5.673 17 C 0.210 3.790 18 C -0.105 4.105 19 C -0.030 4.030 20 C -0.017 4.017 21 C 0.261 3.739 22 N -0.432 5.432 23 C -0.117 4.117 24 C 0.508 3.492 25 F -0.164 7.164 26 F -0.181 7.181 27 F -0.178 7.178 28 C -0.093 4.093 29 H 0.039 0.961 30 H 0.028 0.972 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.264 0.736 35 H 0.404 0.596 36 H 0.428 0.572 37 H 0.142 0.858 38 H 0.167 0.833 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.633 7.497 -14.787 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.163 4.163 3 C 0.194 3.806 4 H 0.024 0.976 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.790 3.210 10 H -0.197 1.197 11 H -0.217 1.217 12 H -0.191 1.191 13 N -0.363 5.363 14 C 0.395 3.605 15 O -0.483 6.483 16 N -0.322 5.322 17 C 0.111 3.889 18 C -0.126 4.126 19 C -0.051 4.051 20 C -0.022 4.022 21 C -0.054 4.054 22 N -0.108 5.108 23 C -0.122 4.122 24 C 0.454 3.546 25 F -0.146 7.146 26 F -0.162 7.162 27 F -0.159 7.159 28 C -0.114 4.114 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.239 0.761 36 H 0.268 0.732 37 H 0.160 0.840 38 H 0.185 0.815 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.732 8.163 -13.860 18.800 hybrid contribution 1.581 -0.415 -0.310 1.663 sum -8.151 7.749 -14.170 18.090 Atomic orbital electron populations 1.21652 0.96866 0.98888 1.00441 1.21824 0.93800 0.99389 1.01251 1.18264 0.93247 0.88794 0.80315 0.97591 1.21546 0.91536 1.38783 1.06546 0.90860 1.25676 1.02761 0.94560 0.95209 1.70030 1.36940 1.38328 1.09872 0.85513 0.79764 0.78369 0.77365 1.19701 1.21658 1.19102 1.45452 1.13776 1.58504 1.18542 1.16113 0.83020 0.78620 0.82778 1.90926 1.52369 1.65319 1.39637 1.42531 1.20121 1.54611 1.14921 1.17629 0.86246 0.90904 0.94117 1.21433 0.96803 0.94794 0.99572 1.21181 0.92319 0.95832 0.95765 1.15549 0.89924 1.01487 0.95198 1.25683 0.92815 0.93205 0.93719 1.81249 1.11800 1.10274 1.07442 1.19577 0.97402 1.03806 0.91426 1.18235 0.77576 0.73892 0.84937 1.93200 1.78192 1.77454 1.65722 1.93241 1.42955 1.84729 1.95260 1.93241 1.95730 1.35923 1.90991 1.20678 0.92012 0.99611 0.99116 0.94219 0.95310 0.93537 0.94100 0.91196 0.92694 0.76079 0.73249 0.84018 0.81527 0.80545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 8.51 71.98 0.61 -4.32 16 2 C -0.12 -5.51 5.45 30.59 0.17 -5.35 16 3 C 0.30 13.47 2.24 44.24 0.10 13.57 16 4 H 0.01 0.34 7.58 -2.38 -0.02 0.32 16 5 C -0.55 -26.13 8.73 25.60 0.22 -25.91 16 6 H 0.07 3.24 7.74 -2.91 -0.02 3.22 16 7 C 0.02 0.92 5.29 84.65 0.45 1.37 16 8 N -0.91 -49.17 11.29 21.45 0.24 -48.93 16 9 Si 0.96 39.42 29.54 68.60 2.03 41.44 16 10 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 11 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 13 N -0.71 -23.93 5.03 -461.44 -2.32 -26.25 16 14 C 0.69 21.58 6.86 179.05 1.23 22.81 16 15 O -0.60 -23.26 11.17 -3.97 -0.04 -23.31 16 16 N -0.67 -13.47 5.33 -317.13 -1.69 -15.16 16 17 C 0.21 3.99 6.27 38.33 0.24 4.24 16 18 C -0.11 -2.19 8.62 22.35 0.19 -2.00 16 19 C -0.03 -0.51 9.75 22.51 0.22 -0.29 16 20 C -0.02 -0.31 5.72 -21.29 -0.12 -0.43 16 21 C 0.26 5.81 13.18 88.33 1.16 6.98 16 22 N -0.43 -11.45 18.54 19.00 0.35 -11.09 16 23 C -0.12 -2.03 5.40 -19.62 -0.11 -2.14 16 24 C 0.51 9.42 2.89 71.23 0.21 9.62 16 25 F -0.16 -2.68 15.97 44.97 0.72 -1.97 16 26 F -0.18 -3.90 16.52 44.97 0.74 -3.16 16 27 F -0.18 -3.61 16.52 44.97 0.74 -2.87 16 28 C -0.09 -1.39 9.33 22.35 0.21 -1.18 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.03 1.27 7.84 -2.39 -0.02 1.25 16 31 H 0.05 1.79 5.65 -2.38 -0.01 1.77 16 32 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 3.59 5.95 -2.38 -0.01 3.57 16 34 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 35 H 0.40 10.91 8.56 -92.71 -0.79 10.12 16 36 H 0.43 5.24 8.83 -92.71 -0.82 4.42 16 37 H 0.14 3.62 6.42 -2.91 -0.02 3.60 16 38 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 39 H 0.18 1.69 7.15 -2.91 -0.02 1.67 16 Total: -1.00 -62.51 347.82 5.10 -57.41 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -0.45 Total: 16.91 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 4.78 Total: 16.97 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -3.41 Total: -101.43 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.04 Total: -23.31 kcal Atomic # 9 Polarization: -10.20 SS G_CDS: 2.20 Total: -7.99 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.44 kcal Total: -62.51 5.10 -57.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096218.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.130 kcal (2) G-P(sol) polarization free energy of solvation -62.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds