Wall clock time and date at job start Tue Mar 31 2020 06:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47023 * 2 1 4 4 H 1.08997 * 109.47765 * 303.60923 * 3 2 1 5 5 C 1.50704 * 109.46947 * 183.60322 * 3 2 1 6 6 H 1.08002 * 120.00496 * 245.73236 * 5 3 2 7 7 C 1.37877 * 119.99677 * 65.73665 * 5 3 2 8 8 N 1.31518 * 120.00212 * 198.93837 * 7 5 3 9 9 Si 1.86803 * 120.00295 * 18.93607 * 7 5 3 10 10 H 1.48496 * 109.47222 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47045 * 300.00596 * 9 7 5 12 12 H 1.48507 * 109.46759 * 60.00057 * 9 7 5 13 13 N 1.46502 * 109.47319 * 63.60766 * 3 2 1 14 14 C 1.34770 * 120.00057 * 274.99761 * 13 3 2 15 15 O 1.21584 * 120.00182 * 0.02562 * 14 13 3 16 16 N 1.34778 * 120.00258 * 179.97438 * 14 13 3 17 17 C 1.39538 * 120.00485 * 184.80195 * 16 14 13 18 18 C 1.39125 * 119.91983 * 142.26710 * 17 16 14 19 19 C 1.37678 * 120.07902 * 179.97438 * 18 17 16 20 20 C 1.39796 * 119.92031 * 0.02562 * 19 18 17 21 21 C 1.43198 * 120.08120 * 180.02562 * 20 19 18 22 22 N 9.79448 * 63.95005 * 200.24055 * 3 1 2 23 23 C 1.39761 * 119.83977 * 0.02562 * 20 19 18 24 24 C 1.50700 * 120.04258 * 180.02562 * 23 20 19 25 25 F 1.39904 * 109.47307 * 179.97438 * 24 23 20 26 26 F 1.39900 * 109.46958 * 299.99700 * 24 23 20 27 27 F 1.39901 * 109.46920 * 59.99540 * 24 23 20 28 28 C 1.37717 * 119.91527 * 359.69683 * 23 20 19 29 29 H 1.09001 * 109.47365 * 300.00338 * 1 2 3 30 30 H 1.08999 * 109.46852 * 59.99740 * 1 2 3 31 31 H 1.09001 * 109.47257 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46892 * 239.99792 * 2 1 3 33 33 H 1.09006 * 109.46705 * 119.99890 * 2 1 3 34 34 H 0.97000 * 119.99332 * 354.95543 * 8 7 5 35 35 H 0.97003 * 119.99689 * 94.99915 * 13 3 2 36 36 H 0.97003 * 119.99649 * 4.80989 * 16 14 13 37 37 H 1.07994 * 119.96231 * 0.02562 * 18 17 16 38 38 H 1.08000 * 120.03640 * 180.02562 * 19 18 17 39 39 H 1.08004 * 119.95675 * 180.29760 * 28 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6248 1.9747 -0.8558 5 6 3.5444 1.4433 -0.0893 6 1 4.1343 1.8101 0.7377 7 6 4.1677 0.9760 -1.2269 8 7 5.4343 0.6245 -1.1855 9 14 3.2131 0.8419 -2.8270 10 1 4.1042 0.3170 -3.8925 11 1 2.0644 -0.0811 -2.6422 12 1 2.7117 2.1839 -3.2182 13 7 1.6239 2.1075 1.2373 14 6 0.4044 2.6753 1.3199 15 8 -0.3507 2.6351 0.3678 16 7 0.0214 3.2867 2.4583 17 6 -1.2758 3.7863 2.5796 18 6 -1.9460 3.6892 3.7949 19 6 -3.2258 4.1815 3.9184 20 6 -3.8520 4.7792 2.8207 21 6 -5.1828 5.2929 2.9455 22 7 -6.2386 5.7003 3.0443 23 6 -3.1760 4.8740 1.6011 24 6 -3.8464 5.5179 0.4150 25 9 -2.9773 5.4952 -0.6811 26 9 -5.0135 4.8137 0.0999 27 9 -4.1707 6.8430 0.7251 28 6 -1.8939 4.3845 1.4866 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8901 34 1 5.9496 0.7624 -0.3753 35 1 2.2262 2.1393 1.9970 36 1 0.6476 3.3795 3.1933 37 1 -1.4616 3.2277 4.6426 38 1 -3.7453 4.1061 4.8623 39 1 -1.3691 4.4618 0.5458 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097096220.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:28 Heat of formation + Delta-G solvation = -119.922532 kcal Electronic energy + Delta-G solvation = -29602.382066 eV Core-core repulsion = 24902.579655 eV Total energy + Delta-G solvation = -4699.802411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.33576 -47.82251 -47.80907 -40.87833 -39.31033 -36.94244 -35.78557 -34.68044 -32.65284 -32.39070 -31.67168 -30.09877 -27.29262 -26.57446 -24.27300 -22.63128 -22.39518 -21.27703 -19.90352 -19.69852 -18.96523 -18.67304 -18.52854 -18.40418 -17.24161 -16.53587 -15.97963 -15.34447 -15.15281 -14.85595 -14.80829 -14.55279 -14.27908 -14.16897 -14.04460 -13.98658 -13.92246 -13.86549 -13.49458 -13.27665 -13.01788 -12.97674 -12.72167 -12.59109 -12.51322 -12.37595 -11.86975 -11.71719 -10.98868 -10.81549 -10.58796 -10.50819 -9.98296 -9.92884 -9.70308 -9.58913 -9.19536 -8.60151 -8.38859 -8.22904 -6.68589 -4.32081 0.12139 0.69490 2.28894 2.35130 2.46111 2.70899 3.21124 3.33364 3.36141 3.40241 3.46355 3.52968 3.54972 3.77662 4.18877 4.34099 4.41691 4.49952 4.62536 4.83212 4.90169 5.06452 5.30030 5.45481 5.65617 5.78188 5.95596 5.98995 6.02260 6.17610 6.49963 6.51939 6.70609 6.80377 6.86748 6.97380 7.10684 7.27623 7.31283 7.59527 8.13953 8.37019 8.60389 8.85342 9.36804 10.72535 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.003034 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.708461 B = 9226.882120 C = 9980.138122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.138 4.138 3 C 0.264 3.736 4 H 0.044 0.956 5 C -0.622 4.622 6 H 0.062 0.938 7 C 0.042 3.958 8 N -0.893 5.893 9 Si 1.038 2.962 10 H -0.283 1.283 11 H -0.269 1.269 12 H -0.279 1.279 13 N -0.705 5.705 14 C 0.691 3.309 15 O -0.573 6.573 16 N -0.694 5.694 17 C 0.215 3.785 18 C -0.126 4.126 19 C -0.046 4.046 20 C -0.012 4.012 21 C 0.243 3.757 22 N -0.396 5.396 23 C -0.120 4.120 24 C 0.505 3.495 25 F -0.165 7.165 26 F -0.173 7.173 27 F -0.175 7.175 28 C -0.075 4.075 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.270 0.730 35 H 0.392 0.608 36 H 0.411 0.589 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.770 6.898 11.530 19.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.177 4.177 3 C 0.161 3.839 4 H 0.062 0.938 5 C -0.660 4.660 6 H 0.080 0.920 7 C -0.165 4.165 8 N -0.526 5.526 9 Si 0.865 3.135 10 H -0.208 1.208 11 H -0.195 1.195 12 H -0.205 1.205 13 N -0.356 5.356 14 C 0.391 3.609 15 O -0.450 6.450 16 N -0.341 5.341 17 C 0.115 3.885 18 C -0.147 4.147 19 C -0.067 4.067 20 C -0.016 4.016 21 C -0.073 4.073 22 N -0.071 5.071 23 C -0.124 4.124 24 C 0.450 3.550 25 F -0.146 7.146 26 F -0.154 7.154 27 F -0.156 7.156 28 C -0.096 4.096 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.225 0.775 36 H 0.247 0.753 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.828 6.903 9.112 19.524 hybrid contribution 0.898 0.471 2.167 2.392 sum -14.930 7.373 11.278 20.111 Atomic orbital electron populations 1.21865 0.97270 0.98902 1.01889 1.22345 0.93837 0.99690 1.01861 1.19030 0.95292 0.88136 0.81470 0.93835 1.22035 0.89387 1.49788 1.04790 0.92009 1.25666 0.97040 0.91994 1.01822 1.70894 1.09524 1.39509 1.32632 0.84121 0.75689 0.77795 0.75868 1.20837 1.19548 1.20492 1.45600 1.13349 1.57522 1.19103 1.16145 0.83677 0.78796 0.82244 1.90933 1.53232 1.64730 1.36092 1.42852 1.11701 1.60528 1.19053 1.17540 0.85182 0.92094 0.93635 1.21084 0.94257 1.01577 0.97826 1.20897 0.93966 0.94688 0.97191 1.15523 0.87625 1.04296 0.94194 1.25512 0.92788 0.94138 0.94812 1.81238 1.11132 1.08326 1.06389 1.19805 0.96337 1.04168 0.92112 1.18208 0.76960 0.76610 0.83176 1.93242 1.69041 1.96214 1.56107 1.93242 1.49930 1.78555 1.93659 1.93234 1.92961 1.36475 1.92928 1.21208 0.93017 0.93964 1.01389 0.93586 0.92790 0.95104 0.91311 0.93048 0.92013 0.77486 0.75312 0.83557 0.83480 0.81443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 8.49 37.16 0.32 -2.33 16 2 C -0.14 -2.85 5.32 -26.73 -0.14 -2.99 16 3 C 0.26 5.70 1.84 -69.08 -0.13 5.57 16 4 H 0.04 1.04 6.20 -51.93 -0.32 0.71 16 5 C -0.62 -15.55 8.99 -34.44 -0.31 -15.86 16 6 H 0.06 1.61 7.96 -52.49 -0.42 1.19 16 7 C 0.04 1.12 5.29 -17.82 -0.09 1.03 16 8 N -0.89 -25.38 13.70 55.43 0.76 -24.62 16 9 Si 1.04 23.86 26.35 -169.99 -4.48 19.38 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -5.79 5.79 56.52 0.33 -5.46 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.71 -12.05 5.01 -59.82 -0.30 -12.35 16 14 C 0.69 10.85 6.89 -86.92 -0.60 10.25 16 15 O -0.57 -10.79 11.06 5.29 0.06 -10.73 16 16 N -0.69 -7.36 5.31 -14.21 -0.08 -7.43 16 17 C 0.21 2.16 6.25 -83.71 -0.52 1.63 16 18 C -0.13 -0.85 9.95 -39.46 -0.39 -1.24 16 19 C -0.05 -0.31 9.75 -39.20 -0.38 -0.69 16 20 C -0.01 -0.11 5.72 -106.82 -0.61 -0.72 16 21 C 0.24 2.75 13.18 -22.48 -0.30 2.46 16 22 N -0.40 -5.23 18.54 41.84 0.78 -4.46 16 23 C -0.12 -1.36 5.40 -104.24 -0.56 -1.92 16 24 C 0.50 6.36 2.89 36.01 0.10 6.46 16 25 F -0.16 -2.23 15.97 2.25 0.04 -2.20 16 26 F -0.17 -2.31 16.52 2.25 0.04 -2.27 16 27 F -0.17 -2.20 16.52 2.25 0.04 -2.16 16 28 C -0.08 -0.90 8.04 -39.46 -0.32 -1.22 16 29 H 0.05 0.83 5.68 -51.93 -0.29 0.54 16 30 H 0.05 1.07 7.76 -51.93 -0.40 0.66 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 1.50 5.00 -51.93 -0.26 1.25 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.27 7.56 8.73 -40.82 -0.36 7.20 16 35 H 0.39 5.74 8.54 -40.82 -0.35 5.39 16 36 H 0.41 2.91 8.84 -40.82 -0.36 2.55 16 37 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.17 2.40 5.51 -52.48 -0.29 2.11 16 LS Contribution 343.59 15.07 5.18 5.18 Total: -1.00 -30.61 343.59 -5.52 -36.14 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -3.61 Total: 5.10 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -3.94 Total: 0.42 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 1.16 Total: -48.86 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.06 Total: -10.73 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 0.11 Total: -6.63 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -4.48 Total: 19.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.61 -5.52 -36.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096220.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.784 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds