Wall clock time and date at job start Tue Mar 31 2020 05:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47476 * 2 1 4 4 C 1.37059 * 127.12743 * 269.97766 * 3 2 1 5 5 C 1.47210 * 126.54468 * 0.02562 * 4 3 2 6 6 C 1.35070 * 125.28486 * 164.72517 * 5 4 3 7 7 C 1.37803 * 114.68349 * 179.79086 * 6 5 4 8 8 C 1.33724 * 115.08856 * 0.50054 * 7 6 5 9 9 S 1.75852 * 109.78023 * 359.72904 * 8 7 6 10 10 N 1.31705 * 106.91040 * 180.02562 * 4 3 2 11 11 N 1.28531 * 109.72619 * 359.72471 * 10 4 3 12 12 C 1.30544 * 110.14637 * 0.45691 * 11 10 4 13 13 S 1.76199 * 126.26338 * 179.81934 * 12 11 10 14 14 O 1.42095 * 104.27731 * 25.76037 * 13 12 11 15 15 O 1.42105 * 104.28048 * 153.61699 * 13 12 11 16 16 C 1.81396 * 104.44950 * 269.68675 * 13 12 11 17 17 C 1.53002 * 109.47365 * 179.97438 * 16 13 12 18 18 C 1.50698 * 109.47516 * 180.02562 * 17 16 13 19 19 H 1.07996 * 119.99627 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00289 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99796 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00183 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47338 * 59.99775 * 22 20 18 24 24 H 1.48499 * 109.47156 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46799 * 300.00161 * 22 20 18 26 26 H 1.09011 * 109.46749 * 300.00193 * 1 2 3 27 27 H 1.08997 * 109.47234 * 59.99880 * 1 2 3 28 28 H 1.08993 * 109.47610 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47115 * 239.99767 * 2 1 3 30 30 H 1.09006 * 109.47025 * 119.99982 * 2 1 3 31 31 H 1.08001 * 122.65512 * 359.97438 * 6 5 4 32 32 H 1.08000 * 122.46037 * 180.22278 * 7 6 5 33 33 H 1.08000 * 125.10917 * 179.72569 * 8 7 6 34 34 H 1.08996 * 109.47338 * 300.00078 * 16 13 12 35 35 H 1.09005 * 109.46922 * 60.00555 * 16 13 12 36 36 H 1.09008 * 109.47371 * 300.00113 * 17 16 13 37 37 H 1.09000 * 109.47205 * 60.00125 * 17 16 13 38 38 H 0.96996 * 120.00077 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2946 2.1610 -1.0928 5 6 2.1566 1.7708 -2.5055 6 6 2.1504 2.6231 -3.5533 7 6 2.0126 2.0202 -4.7848 8 6 1.8959 0.6884 -4.7542 9 16 1.9668 0.1229 -3.0906 10 7 2.7070 3.3260 -0.6376 11 7 2.6977 3.3177 0.6476 12 6 2.2928 2.1569 1.0868 13 16 2.1245 1.6823 2.7753 14 8 1.9159 2.9073 3.4645 15 8 1.1249 0.6723 2.7575 16 6 3.7371 0.9742 3.2093 17 6 3.7180 0.5195 4.6701 18 6 5.0580 -0.0682 5.0309 19 1 5.8444 -0.1133 4.2921 20 6 5.2796 -0.5493 6.3039 21 7 4.3217 -0.4948 7.2034 22 14 6.9403 -1.2784 6.7509 23 1 7.9974 -0.2521 6.5661 24 1 6.9217 -1.7196 8.1687 25 1 7.2220 -2.4427 5.8732 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.2487 3.6922 -3.4355 32 1 1.9954 2.5824 -5.7067 33 1 1.7761 0.0553 -5.6209 34 1 3.9440 0.1196 2.5651 35 1 4.5131 1.7276 3.0739 36 1 3.5114 1.3744 5.3141 37 1 2.9420 -0.2338 4.8061 38 1 4.4775 -0.8335 8.0989 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097883.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:13 Heat of formation + Delta-G solvation = 38.015646 kcal Electronic energy + Delta-G solvation = -24873.429864 eV Core-core repulsion = 21164.696635 eV Total energy + Delta-G solvation = -3708.733229 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.19675 -38.20887 -37.14757 -35.93094 -35.71866 -34.04656 -32.34709 -31.32706 -30.93378 -28.98659 -25.78517 -25.27187 -24.49462 -23.25608 -22.15782 -21.50690 -19.59778 -18.88126 -18.40032 -17.59689 -16.73786 -16.71168 -16.21178 -15.95844 -15.55572 -15.33696 -15.03962 -14.61377 -14.07907 -13.67720 -13.59128 -13.44508 -13.18366 -12.83548 -12.67202 -12.61211 -12.04600 -11.92813 -11.89973 -11.75819 -11.70347 -11.56793 -11.19409 -11.14275 -11.09477 -10.75085 -10.60274 -10.55862 -10.50962 -10.43604 -9.84563 -9.34870 -9.03509 -8.79753 -8.57559 -6.20291 -4.26857 -0.02200 0.17584 0.87639 1.28965 1.35819 1.96271 2.15137 2.67759 2.93920 3.23712 3.29110 3.30719 3.70708 3.96708 4.04828 4.31145 4.32456 4.57496 4.59737 4.66568 4.86925 4.93492 5.08579 5.15249 5.17553 5.35751 5.39120 5.47997 5.53589 5.58859 5.66181 5.75446 5.92044 5.96390 6.25099 6.28696 7.15729 7.21444 7.72081 8.05178 8.19487 8.75911 9.38513 10.90486 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.017627 B = 0.002974 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.086081 B = 9413.452277 C = 9832.362183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.087 3.913 3 N -0.424 5.424 4 C 0.268 3.732 5 C -0.138 4.138 6 C -0.073 4.073 7 C -0.137 4.137 8 C -0.200 4.200 9 S 0.138 5.862 10 N -0.271 5.271 11 N -0.187 5.187 12 C -0.341 4.341 13 S 2.490 3.510 14 O -0.905 6.905 15 O -0.929 6.929 16 C -0.551 4.551 17 C 0.028 3.972 18 C -0.524 4.524 19 H 0.063 0.937 20 C 0.061 3.939 21 N -0.888 5.888 22 Si 0.902 3.098 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.172 0.828 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.710 -1.329 -23.848 24.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.035 4.035 3 N -0.113 5.113 4 C 0.004 3.996 5 C -0.257 4.257 6 C -0.107 4.107 7 C -0.167 4.167 8 C -0.337 4.337 9 S 0.402 5.598 10 N -0.117 5.117 11 N -0.032 5.032 12 C -0.681 4.681 13 S 2.663 3.337 14 O -0.901 6.901 15 O -0.925 6.925 16 C -0.687 4.687 17 C -0.011 4.011 18 C -0.563 4.563 19 H 0.081 0.919 20 C -0.143 4.143 21 N -0.526 5.526 22 Si 0.729 3.271 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.200 1.200 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.139 0.861 31 H 0.173 0.827 32 H 0.168 0.832 33 H 0.190 0.810 34 H 0.143 0.857 35 H 0.152 0.848 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.170 -1.293 -22.561 23.709 hybrid contribution 1.128 -0.303 -1.166 1.650 sum -6.042 -1.596 -23.727 24.537 Atomic orbital electron populations 1.22191 0.91867 1.04650 1.04018 1.22454 0.98129 0.77328 1.05596 1.46660 1.46326 1.13893 1.04443 1.22123 1.00594 0.89134 0.87776 1.21345 1.15701 0.97727 0.90929 1.20464 0.98380 1.01735 0.90140 1.20121 1.03844 0.93898 0.98791 1.26075 1.08107 0.99206 1.00284 1.84235 1.71058 1.04986 0.99538 1.74682 1.18168 1.16013 1.02840 1.74172 1.10937 1.15206 1.02916 1.39050 1.15356 0.96669 1.17036 1.06967 0.80065 0.75791 0.70921 1.93595 1.85267 1.43826 1.67452 1.93541 1.55741 1.59071 1.84139 1.30186 1.15633 1.11573 1.11292 1.19088 1.00395 0.98070 0.83547 1.20908 0.97110 1.41167 0.97137 0.91863 1.25047 0.97377 0.95621 0.96222 1.69932 1.32570 1.45582 1.04505 0.86496 0.83505 0.79530 0.77581 1.19942 1.20997 1.20044 0.89523 0.92129 0.89158 0.88706 0.86108 0.82708 0.83195 0.81029 0.85741 0.84829 0.94165 0.94317 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 10.06 37.15 0.37 -1.37 16 2 C 0.09 0.97 5.68 -4.05 -0.02 0.95 16 3 N -0.42 -6.13 2.81 -114.65 -0.32 -6.45 16 4 C 0.27 3.93 7.86 -154.17 -1.21 2.72 16 5 C -0.14 -1.54 6.37 -37.07 -0.24 -1.77 16 6 C -0.07 -0.68 10.08 -40.87 -0.41 -1.09 16 7 C -0.14 -0.93 10.16 -41.32 -0.42 -1.35 16 8 C -0.20 -1.24 11.23 29.15 0.33 -0.92 16 9 S 0.14 1.11 20.19 -107.50 -2.17 -1.06 16 10 N -0.27 -4.69 12.23 32.41 0.40 -4.29 16 11 N -0.19 -3.52 12.17 30.51 0.37 -3.15 16 12 C -0.34 -5.79 7.70 -89.17 -0.69 -6.48 16 13 S 2.49 44.43 5.18 -107.50 -0.56 43.88 16 14 O -0.91 -19.17 17.94 -57.54 -1.03 -20.20 16 15 O -0.93 -16.47 14.50 -57.54 -0.83 -17.30 16 16 C -0.55 -10.03 5.92 37.16 0.22 -9.81 16 17 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 18 C -0.52 -13.79 9.11 -34.44 -0.31 -14.10 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 22 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 26 H 0.09 1.08 6.91 -51.92 -0.36 0.72 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 0.83 5.15 -44.82 -0.23 0.60 16 30 H 0.12 1.30 6.92 -51.93 -0.36 0.94 16 31 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.12 1.91 8.14 -51.93 -0.42 1.48 16 35 H 0.13 2.27 8.14 -51.92 -0.42 1.85 16 36 H 0.04 1.02 8.14 -51.92 -0.42 0.59 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 351.81 15.07 5.30 5.30 Total: -1.00 -34.47 351.81 -10.04 -44.51 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.29 Total: -0.97 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: -2.62 Total: -31.15 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 1.18 Total: -38.52 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -1.87 Total: -37.50 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 45.54 SS G_CDS: -2.73 Total: 42.81 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.47 -10.04 -44.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097883.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.527 kcal (2) G-P(sol) polarization free energy of solvation -34.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds