Wall clock time and date at job start Tue Mar 31 2020 05:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47476 * 2 1 4 4 C 1.37059 * 127.12743 * 269.97766 * 3 2 1 5 5 C 1.47210 * 126.54468 * 0.02562 * 4 3 2 6 6 C 1.35070 * 125.28486 * 164.72517 * 5 4 3 7 7 C 1.37803 * 114.68349 * 179.79086 * 6 5 4 8 8 C 1.33724 * 115.08856 * 0.50054 * 7 6 5 9 9 S 1.75852 * 109.78023 * 359.72904 * 8 7 6 10 10 N 1.31705 * 106.91040 * 180.02562 * 4 3 2 11 11 N 1.28531 * 109.72619 * 359.72471 * 10 4 3 12 12 C 1.30544 * 110.14637 * 0.45691 * 11 10 4 13 13 S 1.76199 * 126.26338 * 179.81934 * 12 11 10 14 14 O 1.42095 * 104.27731 * 25.76037 * 13 12 11 15 15 O 1.42105 * 104.28048 * 153.61699 * 13 12 11 16 16 C 1.81396 * 104.44950 * 269.68675 * 13 12 11 17 17 C 1.53002 * 109.47365 * 179.97438 * 16 13 12 18 18 C 1.50698 * 109.47516 * 180.02562 * 17 16 13 19 19 H 1.07996 * 119.99627 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00289 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99796 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00183 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47338 * 59.99775 * 22 20 18 24 24 H 1.48499 * 109.47156 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46799 * 300.00161 * 22 20 18 26 26 H 1.09011 * 109.46749 * 300.00193 * 1 2 3 27 27 H 1.08997 * 109.47234 * 59.99880 * 1 2 3 28 28 H 1.08993 * 109.47610 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47115 * 239.99767 * 2 1 3 30 30 H 1.09006 * 109.47025 * 119.99982 * 2 1 3 31 31 H 1.08001 * 122.65512 * 359.97438 * 6 5 4 32 32 H 1.08000 * 122.46037 * 180.22278 * 7 6 5 33 33 H 1.08000 * 125.10917 * 179.72569 * 8 7 6 34 34 H 1.08996 * 109.47338 * 300.00078 * 16 13 12 35 35 H 1.09005 * 109.46922 * 60.00555 * 16 13 12 36 36 H 1.09008 * 109.47371 * 300.00113 * 17 16 13 37 37 H 1.09000 * 109.47205 * 60.00125 * 17 16 13 38 38 H 0.96996 * 120.00077 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2946 2.1610 -1.0928 5 6 2.1566 1.7708 -2.5055 6 6 2.1504 2.6231 -3.5533 7 6 2.0126 2.0202 -4.7848 8 6 1.8959 0.6884 -4.7542 9 16 1.9668 0.1229 -3.0906 10 7 2.7070 3.3260 -0.6376 11 7 2.6977 3.3177 0.6476 12 6 2.2928 2.1569 1.0868 13 16 2.1245 1.6823 2.7753 14 8 1.9159 2.9073 3.4645 15 8 1.1249 0.6723 2.7575 16 6 3.7371 0.9742 3.2093 17 6 3.7180 0.5195 4.6701 18 6 5.0580 -0.0682 5.0309 19 1 5.8444 -0.1133 4.2921 20 6 5.2796 -0.5493 6.3039 21 7 4.3217 -0.4948 7.2034 22 14 6.9403 -1.2784 6.7509 23 1 7.9974 -0.2521 6.5661 24 1 6.9217 -1.7196 8.1687 25 1 7.2220 -2.4427 5.8732 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.2487 3.6922 -3.4355 32 1 1.9954 2.5824 -5.7067 33 1 1.7761 0.0553 -5.6209 34 1 3.9440 0.1196 2.5651 35 1 4.5131 1.7276 3.0739 36 1 3.5114 1.3744 5.3141 37 1 2.9420 -0.2338 4.8061 38 1 4.4775 -0.8335 8.0989 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097097883.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:12 Heat of formation + Delta-G solvation = 15.304580 kcal Electronic energy + Delta-G solvation = -24874.414689 eV Core-core repulsion = 21164.696635 eV Total energy + Delta-G solvation = -3709.718055 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 341.065 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.38049 -38.84180 -38.58811 -37.33864 -36.98272 -35.94842 -33.33931 -33.20561 -31.91023 -29.86746 -27.67858 -26.10389 -25.45217 -24.51306 -23.38624 -22.89893 -20.57059 -19.97754 -19.45352 -18.90739 -18.29413 -17.90251 -17.51365 -16.99111 -16.86360 -16.65856 -16.49726 -15.89534 -15.29718 -14.83290 -14.49012 -14.45274 -14.23358 -13.79498 -13.77996 -13.71215 -13.51238 -13.42092 -13.29971 -13.01875 -12.92813 -12.87908 -12.78954 -12.54573 -12.28007 -12.22115 -12.16404 -11.81297 -11.76257 -11.57922 -11.52182 -11.14464 -10.61976 -9.64685 -9.60631 -8.25027 -6.38585 -1.34120 -0.77837 0.14469 0.30052 0.74445 0.93969 1.21877 1.44051 1.46685 1.53450 1.55174 1.81516 2.38969 2.55443 2.68552 2.91652 3.09390 3.27601 3.59110 3.75285 3.85921 3.89605 4.02249 4.09313 4.12280 4.32517 4.38087 4.58283 4.61924 4.63992 4.75118 5.00131 5.11426 5.12603 5.23416 5.25726 5.30564 5.34315 5.68725 6.04340 6.73759 6.97141 7.31390 8.86768 Molecular weight = 341.07amu Principal moments of inertia in cm(-1) A = 0.017627 B = 0.002974 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.086081 B = 9413.452277 C = 9832.362183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.072 3.928 3 N -0.421 5.421 4 C 0.286 3.714 5 C -0.189 4.189 6 C -0.061 4.061 7 C -0.147 4.147 8 C -0.172 4.172 9 S 0.154 5.846 10 N -0.305 5.305 11 N -0.218 5.218 12 C -0.352 4.352 13 S 2.518 3.482 14 O -0.945 6.945 15 O -0.929 6.929 16 C -0.547 4.547 17 C 0.021 3.979 18 C -0.540 4.540 19 H 0.076 0.924 20 C 0.002 3.998 21 N -0.930 5.930 22 Si 0.970 3.030 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.261 1.261 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.150 0.850 32 H 0.180 0.820 33 H 0.209 0.791 34 H 0.157 0.843 35 H 0.145 0.855 36 H 0.013 0.987 37 H 0.026 0.974 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.116 -3.290 -27.425 28.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.048 4.048 3 N -0.110 5.110 4 C 0.021 3.979 5 C -0.308 4.308 6 C -0.097 4.097 7 C -0.175 4.175 8 C -0.309 4.309 9 S 0.418 5.582 10 N -0.151 5.151 11 N -0.063 5.063 12 C -0.696 4.696 13 S 2.692 3.308 14 O -0.941 6.941 15 O -0.926 6.926 16 C -0.682 4.682 17 C -0.018 4.018 18 C -0.580 4.580 19 H 0.094 0.906 20 C -0.197 4.197 21 N -0.569 5.569 22 Si 0.794 3.206 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.186 1.186 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.168 0.832 32 H 0.197 0.803 33 H 0.226 0.774 34 H 0.175 0.825 35 H 0.163 0.837 36 H 0.032 0.968 37 H 0.044 0.956 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.580 -3.273 -26.116 27.130 hybrid contribution 0.859 0.280 -0.327 0.961 sum -5.720 -2.993 -26.443 27.219 Atomic orbital electron populations 1.22233 0.91168 1.06268 1.03068 1.22864 0.98856 0.75908 1.07181 1.46846 1.45908 1.14711 1.03580 1.22641 0.97964 0.88131 0.89203 1.21476 1.19707 1.00215 0.89390 1.20732 0.96362 1.01679 0.90948 1.20356 1.04129 0.94395 0.98665 1.26589 1.04814 0.99322 1.00156 1.84088 1.70608 1.02724 1.00762 1.74580 1.20313 1.17966 1.02270 1.74084 1.11901 1.16298 1.04032 1.38409 1.17049 0.97090 1.17003 1.05842 0.79442 0.74775 0.70707 1.93542 1.85730 1.45614 1.69251 1.93527 1.55665 1.58903 1.84466 1.30032 1.16623 1.13268 1.08315 1.18935 0.99376 0.96720 0.86733 1.21419 0.98281 1.40640 0.97627 0.90550 1.26015 1.01207 0.96145 0.96305 1.70068 1.34885 1.46978 1.04959 0.85422 0.78787 0.79104 0.77320 1.19234 1.20978 1.18558 0.92159 0.91365 0.86239 0.85975 0.85833 0.83244 0.80308 0.77446 0.82482 0.83676 0.96821 0.95587 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 10.06 71.98 0.72 -2.53 16 2 C 0.07 1.51 5.68 86.38 0.49 2.00 16 3 N -0.42 -12.03 2.81 -516.65 -1.45 -13.49 16 4 C 0.29 8.28 7.86 136.07 1.07 9.35 16 5 C -0.19 -3.92 6.37 23.90 0.15 -3.76 16 6 C -0.06 -1.03 10.08 21.44 0.22 -0.82 16 7 C -0.15 -1.43 10.16 21.14 0.21 -1.21 16 8 C -0.17 -1.33 11.23 66.79 0.75 -0.58 16 9 S 0.15 1.97 20.19 -56.49 -1.14 0.83 16 10 N -0.31 -10.82 12.23 -51.36 -0.63 -11.45 16 11 N -0.22 -8.46 12.17 -57.39 -0.70 -9.16 16 12 C -0.35 -12.23 7.70 179.84 1.38 -10.84 16 13 S 2.52 92.60 5.18 -56.49 -0.29 92.30 16 14 O -0.94 -42.06 17.94 -127.65 -2.29 -44.35 16 15 O -0.93 -33.55 14.50 -127.65 -1.85 -35.40 16 16 C -0.55 -20.06 5.92 71.98 0.43 -19.64 16 17 C 0.02 1.06 4.98 29.85 0.15 1.21 16 18 C -0.54 -28.61 9.11 25.60 0.23 -28.37 16 19 H 0.08 3.73 7.74 -2.91 -0.02 3.71 16 20 C 0.00 0.14 5.46 84.65 0.46 0.60 16 21 N -0.93 -54.37 13.29 21.45 0.28 -54.08 16 22 Si 0.97 41.92 29.54 68.60 2.03 43.94 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 26 H 0.06 1.49 6.91 -2.38 -0.02 1.48 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.12 1.85 5.15 -6.91 -0.04 1.81 16 30 H 0.12 2.50 6.92 -2.38 -0.02 2.48 16 31 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 32 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 33 H 0.21 0.14 8.06 -2.91 -0.02 0.11 16 34 H 0.16 4.64 8.14 -2.39 -0.02 4.62 16 35 H 0.15 4.98 8.14 -2.39 -0.02 4.96 16 36 H 0.01 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -77.51 351.81 1.30 -76.21 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.07 Total: 9.24 kcal Atomic # 6 Polarization: -60.87 SS G_CDS: 6.27 Total: -54.60 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -2.50 Total: -88.17 kcal Atomic # 8 Polarization: -75.61 SS G_CDS: -4.14 Total: -79.75 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: 94.57 SS G_CDS: -1.43 Total: 93.13 kcal Total: -77.51 1.30 -76.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097883.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.513 kcal (2) G-P(sol) polarization free energy of solvation -77.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds