Wall clock time and date at job start Tue Mar 31 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30523 * 126.34658 * 2 1 4 4 N 1.28599 * 109.66788 * 179.72607 * 3 2 1 5 5 C 1.30515 * 109.67707 * 0.44830 * 4 3 2 6 6 S 1.76194 * 126.34751 * 179.82293 * 5 4 3 7 7 O 1.42104 * 104.27735 * 144.10073 * 6 5 4 8 8 O 1.42102 * 104.27740 * 16.24756 * 6 5 4 9 9 C 1.81391 * 104.45170 * 260.17090 * 6 5 4 10 10 C 1.52998 * 109.47347 * 184.96498 * 9 6 5 11 11 C 1.50709 * 109.47171 * 180.02562 * 10 9 6 12 12 H 1.07990 * 119.99770 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99484 * 180.02562 * 11 10 9 14 14 N 1.31506 * 120.00431 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99479 * 179.72207 * 13 11 10 16 16 H 1.48503 * 109.47254 * 180.27562 * 15 13 11 17 17 H 1.48505 * 109.47191 * 300.27425 * 15 13 11 18 18 H 1.48504 * 109.47145 * 60.27248 * 15 13 11 19 19 N 1.35492 * 126.34424 * 179.97438 * 2 1 3 20 20 C 1.46504 * 126.98222 * 0.02562 * 19 2 1 21 21 H 1.08998 * 109.46887 * 252.81894 * 20 19 2 22 22 C 1.53001 * 109.46782 * 12.81939 * 20 19 2 23 23 C 1.53001 * 109.47278 * 60.00337 * 22 20 19 24 24 C 1.53005 * 109.46977 * 59.99236 * 23 22 20 25 25 C 1.52992 * 109.47372 * 300.00303 * 24 23 22 26 26 H 1.08998 * 109.46976 * 299.99820 * 25 24 23 27 27 C 1.53002 * 109.47100 * 180.02562 * 25 24 23 28 28 C 1.52996 * 109.47446 * 60.00202 * 25 24 23 29 29 H 1.09001 * 109.46955 * 277.78245 * 1 2 3 30 30 H 1.09000 * 109.46624 * 37.77950 * 1 2 3 31 31 H 1.09002 * 109.47088 * 157.77695 * 1 2 3 32 32 H 1.09003 * 109.47051 * 64.96574 * 9 6 5 33 33 H 1.09003 * 109.47435 * 304.96452 * 9 6 5 34 34 H 1.09001 * 109.47343 * 60.00420 * 10 9 6 35 35 H 1.09002 * 109.47163 * 299.99925 * 10 9 6 36 36 H 0.96996 * 120.00246 * 359.73045 * 14 13 11 37 37 H 1.09001 * 109.46522 * 179.97438 * 22 20 19 38 38 H 1.08990 * 109.47118 * 300.00051 * 22 20 19 39 39 H 1.09005 * 109.46780 * 300.00103 * 23 22 20 40 40 H 1.09000 * 109.47449 * 179.97438 * 23 22 20 41 41 H 1.08998 * 109.46861 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.46822 * 60.00684 * 24 23 22 43 43 H 1.08998 * 109.46780 * 315.20554 * 27 25 24 44 44 H 1.09001 * 109.47419 * 75.20606 * 27 25 24 45 45 H 1.09001 * 109.47304 * 195.21003 * 27 25 24 46 46 H 1.09000 * 109.47579 * 180.02562 * 28 25 24 47 47 H 1.08998 * 109.47344 * 59.99843 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2806 1.0513 0.0000 4 7 3.5125 0.6822 0.0058 5 6 3.5808 -0.6211 0.0001 6 16 5.0526 -1.5897 0.0002 7 8 4.7297 -2.7179 0.8017 8 8 6.0710 -0.6797 0.3927 9 6 5.2712 -2.0812 -1.7321 10 6 6.4600 -3.0377 -1.8448 11 6 6.6419 -3.4456 -3.2842 12 1 5.9760 -3.0614 -4.0426 13 6 7.6579 -4.3101 -3.6325 14 7 8.4686 -4.7784 -2.7089 15 14 7.8786 -4.8218 -5.4155 16 1 9.0288 -5.7549 -5.5240 17 1 6.6457 -5.4983 -5.8926 18 1 8.1367 -3.6190 -6.2474 19 7 2.3100 -1.0913 0.0005 20 6 1.8897 -2.4948 0.0006 21 1 2.0759 -2.9297 0.9825 22 6 0.3961 -2.5798 -0.3200 23 6 0.1347 -1.9692 -1.6984 24 6 0.9281 -2.7393 -2.7560 25 6 2.4216 -2.6543 -2.4353 26 1 2.7344 -1.6101 -2.4355 27 6 3.2150 -3.4238 -3.4933 28 6 2.6830 -3.2648 -1.0571 29 1 -0.3633 0.1392 1.0182 30 1 -0.3632 0.8123 -0.6296 31 1 -0.3633 -0.9513 -0.3887 32 1 5.4581 -1.1961 -2.3401 33 1 4.3686 -2.5804 -2.0849 34 1 6.2731 -3.9229 -1.2369 35 1 7.3626 -2.5387 -1.4921 36 1 8.3542 -4.5125 -1.7831 37 1 0.0835 -3.6240 -0.3204 38 1 -0.1690 -2.0312 0.4334 39 1 0.4476 -0.9251 -1.6984 40 1 -0.9293 -2.0302 -1.9270 41 1 0.7416 -2.3047 -3.7380 42 1 0.6153 -3.7834 -2.7559 43 1 2.7305 -4.3811 -3.6857 44 1 3.2504 -2.8428 -4.4149 45 1 4.2293 -3.5959 -3.1331 46 1 3.7470 -3.2038 -0.8284 47 1 2.3703 -4.3090 -1.0569 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:44 Heat of formation + Delta-G solvation = 57.587359 kcal Electronic energy + Delta-G solvation = -30859.333008 eV Core-core repulsion = 26980.361790 eV Total energy + Delta-G solvation = -3878.971218 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.64692 -39.91556 -36.99782 -35.83016 -35.59024 -34.30872 -34.04007 -31.89173 -30.99418 -30.24594 -28.33319 -26.63406 -25.27880 -23.83956 -22.91046 -22.62538 -21.88178 -21.06303 -20.04939 -18.78905 -17.77115 -17.00158 -16.90777 -16.45420 -16.20538 -15.92183 -15.52931 -15.08826 -14.58160 -14.42590 -14.12679 -13.84717 -13.62178 -13.37927 -13.10073 -12.92527 -12.85446 -12.65695 -12.38128 -12.16477 -12.02376 -11.87573 -11.71371 -11.57315 -11.44129 -11.31795 -11.08662 -11.03510 -10.92076 -10.78260 -10.66729 -10.60919 -10.48424 -10.44460 -10.17257 -10.08013 -10.01688 -9.57904 -8.77229 -8.53625 -6.55187 -4.29794 0.12055 1.23335 2.14857 2.52096 2.92368 3.33350 3.35791 3.54129 3.80407 3.95030 3.97913 4.12522 4.22731 4.30318 4.39722 4.50622 4.59370 4.70832 4.78617 4.92451 4.98782 5.00659 5.08413 5.17315 5.19532 5.29534 5.30950 5.38506 5.43892 5.48442 5.51614 5.55110 5.59889 5.69062 5.72305 5.81157 5.87340 5.90869 6.11093 6.17175 6.19464 6.51289 6.64019 6.83848 6.91931 7.82434 8.20449 8.36461 8.63250 9.42147 10.84168 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014519 B = 0.004789 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.985316 B = 5844.928341 C = 6974.564125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.205 3.795 3 N -0.298 5.298 4 N -0.190 5.190 5 C -0.357 4.357 6 S 2.488 3.512 7 O -0.931 6.931 8 O -0.913 6.913 9 C -0.599 4.599 10 C 0.019 3.981 11 C -0.598 4.598 12 H 0.061 0.939 13 C 0.021 3.979 14 N -0.901 5.901 15 Si 1.069 2.931 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.286 1.286 19 N -0.409 5.409 20 C 0.123 3.877 21 H 0.118 0.882 22 C -0.146 4.146 23 C -0.150 4.150 24 C -0.111 4.111 25 C -0.108 4.108 26 H 0.069 0.931 27 C -0.182 4.182 28 C -0.158 4.158 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.169 0.831 34 H 0.029 0.971 35 H 0.027 0.973 36 H 0.271 0.729 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.109 0.891 46 H 0.082 0.918 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.020 1.714 1.862 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.062 4.062 3 N -0.143 5.143 4 N -0.035 5.035 5 C -0.699 4.699 6 S 2.663 3.337 7 O -0.927 6.927 8 O -0.909 6.909 9 C -0.733 4.733 10 C -0.021 4.021 11 C -0.638 4.638 12 H 0.080 0.920 13 C -0.184 4.184 14 N -0.536 5.536 15 Si 0.896 3.104 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.212 1.212 19 N -0.099 5.099 20 C 0.021 3.979 21 H 0.136 0.864 22 C -0.184 4.184 23 C -0.187 4.187 24 C -0.148 4.148 25 C -0.126 4.126 26 H 0.087 0.913 27 C -0.238 4.238 28 C -0.195 4.195 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.185 0.815 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.127 0.873 46 H 0.100 0.900 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -19.260 2.060 1.679 19.442 hybrid contribution -1.836 0.239 0.683 1.973 sum -21.095 2.298 2.362 21.351 Atomic orbital electron populations 1.21999 0.83779 1.08233 1.04955 1.25187 0.97442 0.82789 1.00810 1.74265 0.96434 1.23939 1.19672 1.74250 1.12485 1.06723 1.10073 1.38475 1.06698 1.05151 1.19550 1.06894 0.72188 0.73900 0.80721 1.93543 1.83035 1.49311 1.66849 1.93566 1.52070 1.63514 1.81788 1.31132 1.13499 1.12219 1.16459 1.19153 0.89401 0.92362 1.01146 1.21762 1.18613 1.32184 0.91222 0.92031 1.25904 0.92486 0.93763 1.06279 1.70777 1.37334 1.42576 1.02924 0.83538 0.76564 0.76624 0.73676 1.20546 1.21192 1.21200 1.46213 1.04593 1.08893 1.50164 1.21990 0.96522 0.76553 1.02814 0.86400 1.22390 0.93130 1.04255 0.98576 1.22237 1.01252 1.01139 0.94050 1.21613 0.93761 1.00904 0.98518 1.21353 0.96376 1.00323 0.94594 0.91304 1.22434 1.03134 0.99944 0.98294 1.22723 1.01501 1.01814 0.93507 0.89598 0.88744 0.84419 0.84734 0.81465 0.95295 0.95475 0.91800 0.88247 0.88734 0.90043 0.90196 0.91207 0.91107 0.92159 0.92117 0.87260 0.89979 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 7.66 36.01 0.28 -0.74 16 2 C 0.20 2.74 6.77 -154.98 -1.05 1.69 16 3 N -0.30 -5.16 12.21 32.80 0.40 -4.75 16 4 N -0.19 -3.71 12.16 30.35 0.37 -3.34 16 5 C -0.36 -6.33 6.89 -89.95 -0.62 -6.95 16 6 S 2.49 47.68 4.50 -107.50 -0.48 47.20 16 7 O -0.93 -17.97 15.18 -57.54 -0.87 -18.84 16 8 O -0.91 -20.53 17.91 -57.54 -1.03 -21.56 16 9 C -0.60 -11.27 4.55 37.16 0.17 -11.10 16 10 C 0.02 0.43 4.14 -27.88 -0.12 0.32 16 11 C -0.60 -15.08 7.91 -34.44 -0.27 -15.35 16 12 H 0.06 1.46 7.05 -52.49 -0.37 1.09 16 13 C 0.02 0.57 5.46 -17.82 -0.10 0.47 16 14 N -0.90 -25.89 13.65 55.43 0.76 -25.14 16 15 Si 1.07 23.32 29.90 -169.99 -5.08 18.24 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.29 -5.83 7.11 56.52 0.40 -5.42 16 18 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 19 N -0.41 -5.74 2.14 -107.24 -0.23 -5.97 16 20 C 0.12 1.36 2.86 -67.93 -0.19 1.16 16 21 H 0.12 1.27 8.05 -51.93 -0.42 0.85 16 22 C -0.15 -0.98 4.79 -26.73 -0.13 -1.11 16 23 C -0.15 -1.03 4.07 -26.73 -0.11 -1.14 16 24 C -0.11 -0.95 5.15 -26.73 -0.14 -1.08 16 25 C -0.11 -1.28 1.60 -90.62 -0.14 -1.43 16 26 H 0.07 0.92 6.68 -51.93 -0.35 0.57 16 27 C -0.18 -2.47 8.78 37.16 0.33 -2.14 16 28 C -0.16 -1.94 3.90 -26.73 -0.10 -2.04 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.14 0.76 1.93 -65.12 -0.13 0.63 16 32 H 0.13 2.39 8.14 -51.92 -0.42 1.97 16 33 H 0.17 2.78 0.37 -51.92 -0.02 2.76 16 34 H 0.03 0.68 8.01 -51.93 -0.42 0.27 16 35 H 0.03 0.67 8.01 -51.93 -0.42 0.25 16 36 H 0.27 7.77 7.22 -40.82 -0.29 7.47 16 37 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.48 5.49 -51.93 -0.29 0.19 16 39 H 0.08 0.68 4.40 -51.93 -0.23 0.45 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.11 1.84 3.45 -51.93 -0.18 1.66 16 46 H 0.08 1.24 2.16 -39.45 -0.09 1.15 16 47 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -34.60 347.65 -9.34 -43.94 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.20 Total: 4.44 kcal Atomic # 6 Polarization: -37.25 SS G_CDS: -2.20 Total: -39.45 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 1.30 Total: -39.20 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -1.90 Total: -40.40 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.08 Total: 18.24 kcal Atomic # 16 Polarization: 47.68 SS G_CDS: -0.48 Total: 47.20 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.60 -9.34 -43.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.530 kcal (2) G-P(sol) polarization free energy of solvation -34.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds