Wall clock time and date at job start Tue Mar 31 2020 06:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30521 * 126.34500 * 2 1 4 4 N 1.28603 * 109.66938 * 179.73495 * 3 2 1 5 5 C 1.30521 * 109.67274 * 0.44782 * 4 3 2 6 6 S 1.76200 * 126.34428 * 179.82942 * 5 4 3 7 7 O 1.42102 * 104.27571 * 144.79034 * 6 5 4 8 8 O 1.42098 * 104.27899 * 16.92892 * 6 5 4 9 9 C 1.81398 * 104.44488 * 260.85959 * 6 5 4 10 10 C 1.53008 * 109.47240 * 172.86517 * 9 6 5 11 11 C 1.50700 * 109.47268 * 179.97438 * 10 9 6 12 12 H 1.07994 * 119.99790 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99607 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00319 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99755 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47236 * 90.00213 * 15 13 11 17 17 H 1.48503 * 109.47064 * 210.00550 * 15 13 11 18 18 H 1.48500 * 109.47064 * 330.00283 * 15 13 11 19 19 N 1.35496 * 107.30833 * 359.56355 * 5 4 3 20 20 C 1.46501 * 126.98008 * 180.26021 * 19 5 4 21 21 H 1.09000 * 109.46503 * 76.92998 * 20 19 5 22 22 C 1.52992 * 109.47307 * 316.93084 * 20 19 5 23 23 C 1.53007 * 109.47060 * 299.99994 * 22 20 19 24 24 C 1.52999 * 109.46903 * 300.00062 * 23 22 20 25 25 C 1.53006 * 109.47334 * 59.99943 * 24 23 22 26 26 H 1.09004 * 109.46995 * 59.99705 * 25 24 23 27 27 C 1.52999 * 109.47334 * 180.02562 * 25 24 23 28 28 C 1.52999 * 109.47093 * 196.92755 * 20 19 5 29 29 H 1.09001 * 109.46754 * 262.82483 * 1 2 3 30 30 H 1.08996 * 109.47277 * 22.82276 * 1 2 3 31 31 H 1.08996 * 109.47272 * 142.82340 * 1 2 3 32 32 H 1.09002 * 109.47424 * 52.86249 * 9 6 5 33 33 H 1.09000 * 109.47486 * 292.86341 * 9 6 5 34 34 H 1.09002 * 109.47131 * 59.99552 * 10 9 6 35 35 H 1.09000 * 109.46738 * 300.00282 * 10 9 6 36 36 H 0.97003 * 119.99660 * 359.97438 * 14 13 11 37 37 H 1.09001 * 109.47672 * 59.99568 * 22 20 19 38 38 H 1.08994 * 109.47181 * 180.02562 * 22 20 19 39 39 H 1.08992 * 109.47087 * 180.02562 * 23 22 20 40 40 H 1.09004 * 109.47008 * 60.00100 * 23 22 20 41 41 H 1.08994 * 109.47219 * 299.99845 * 24 23 22 42 42 H 1.09003 * 109.46920 * 180.02562 * 24 23 22 43 43 H 1.08992 * 109.47071 * 180.02562 * 27 25 24 44 44 H 1.09003 * 109.46920 * 300.00109 * 27 25 24 45 45 H 1.08996 * 109.46735 * 59.99709 * 27 25 24 46 46 H 1.08994 * 109.47219 * 180.02562 * 28 20 19 47 47 H 1.09006 * 109.47101 * 300.00230 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0513 0.0000 4 7 3.5125 0.6823 0.0056 5 6 3.5808 -0.6211 -0.0002 6 16 5.0527 -1.5897 -0.0002 7 8 4.7245 -2.7259 0.7876 8 8 6.0684 -0.6837 0.4080 9 6 5.2825 -2.0636 -1.7361 10 6 6.6325 -2.7651 -1.8988 11 6 6.8231 -3.1593 -3.3408 12 1 6.0582 -2.9319 -4.0684 13 6 7.9747 -3.8095 -3.7312 14 7 8.9064 -4.0859 -2.8452 15 14 8.2107 -4.2988 -5.5184 16 1 8.8827 -3.1946 -6.2494 17 1 9.0493 -5.5223 -5.5901 18 1 6.8877 -4.5686 -6.1366 19 7 2.3100 -1.0914 -0.0001 20 6 1.8897 -2.4948 -0.0002 21 1 2.0082 -2.9095 1.0008 22 6 2.7527 -3.2856 -0.9854 23 6 2.5865 -2.7033 -2.3905 24 6 1.1182 -2.7959 -2.8104 25 6 0.2550 -2.0051 -1.8252 26 1 0.5678 -0.9609 -1.8251 27 6 -1.2134 -2.0982 -2.2447 28 6 0.4214 -2.5874 -0.4202 29 1 -0.3633 -0.1284 1.0196 30 1 -0.3633 0.9472 -0.3986 31 1 -0.3633 -0.8188 -0.6210 32 1 5.2586 -1.1718 -2.3624 33 1 4.4828 -2.7404 -2.0369 34 1 6.6564 -3.6569 -1.2725 35 1 7.4322 -2.0883 -1.5980 36 1 8.7836 -3.8321 -1.9171 37 1 3.7988 -3.2197 -0.6863 38 1 2.4397 -4.3296 -0.9857 39 1 3.2010 -3.2670 -3.0924 40 1 2.8993 -1.6591 -2.3904 41 1 0.8054 -3.8400 -2.8105 42 1 0.9998 -2.3815 -3.8116 43 1 -1.8281 -1.5344 -1.5432 44 1 -1.3321 -1.6837 -3.2459 45 1 -1.5257 -3.1424 -2.2445 46 1 0.1085 -3.6315 -0.4198 47 1 -0.1935 -2.0239 0.2818 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:48 Heat of formation + Delta-G solvation = 42.550606 kcal Electronic energy + Delta-G solvation = -30453.901615 eV Core-core repulsion = 26574.278355 eV Total energy + Delta-G solvation = -3879.623260 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.64059 -39.91429 -37.15127 -35.85388 -35.03540 -34.63918 -33.92626 -31.89631 -31.00329 -30.35929 -28.27397 -27.08032 -25.19382 -23.73521 -23.32195 -22.24611 -21.78484 -21.45311 -20.10926 -18.79364 -17.76209 -17.06980 -16.85189 -16.56839 -16.31022 -15.77192 -15.60153 -14.91318 -14.54594 -14.43032 -14.16308 -13.84431 -13.70252 -13.57425 -13.09133 -12.98027 -12.87935 -12.84636 -12.55042 -12.31518 -12.08572 -12.05231 -11.91601 -11.66563 -11.56055 -11.41459 -11.30849 -11.03408 -10.98584 -10.75172 -10.69541 -10.61576 -10.45389 -10.41572 -10.29770 -10.18195 -10.09085 -9.58625 -8.78581 -8.52266 -6.54184 -4.28409 0.09147 1.21985 2.13921 2.51127 2.89875 3.35301 3.37770 3.53310 3.78916 3.93412 3.95932 4.08913 4.22003 4.22991 4.41067 4.49796 4.58468 4.65033 4.73853 4.90267 4.93290 5.02589 5.06906 5.11538 5.15171 5.21841 5.22210 5.29609 5.34077 5.37487 5.40104 5.45081 5.53082 5.55545 5.65293 5.73533 5.80962 5.83034 5.89169 5.97167 6.05181 6.17181 6.50142 6.82921 6.94467 7.84626 8.22173 8.35599 8.64935 9.43812 10.85705 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013621 B = 0.004436 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.229426 B = 6309.997860 C = 7537.012226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.204 3.796 3 N -0.296 5.296 4 N -0.190 5.190 5 C -0.356 4.356 6 S 2.490 3.510 7 O -0.931 6.931 8 O -0.909 6.909 9 C -0.578 4.578 10 C 0.017 3.983 11 C -0.599 4.599 12 H 0.058 0.942 13 C 0.019 3.981 14 N -0.903 5.903 15 Si 1.075 2.925 16 H -0.285 1.285 17 H -0.282 1.282 18 H -0.287 1.287 19 N -0.409 5.409 20 C 0.126 3.874 21 H 0.116 0.884 22 C -0.170 4.170 23 C -0.145 4.145 24 C -0.110 4.110 25 C -0.118 4.118 26 H 0.085 0.915 27 C -0.150 4.150 28 C -0.141 4.141 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.154 0.846 34 H 0.026 0.974 35 H 0.031 0.969 36 H 0.271 0.729 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.098 0.902 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.018 0.538 2.448 23.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.063 4.063 3 N -0.142 5.142 4 N -0.035 5.035 5 C -0.698 4.698 6 S 2.664 3.336 7 O -0.927 6.927 8 O -0.906 6.906 9 C -0.713 4.713 10 C -0.022 4.022 11 C -0.638 4.638 12 H 0.076 0.924 13 C -0.186 4.186 14 N -0.538 5.538 15 Si 0.902 3.098 16 H -0.212 1.212 17 H -0.208 1.208 18 H -0.214 1.214 19 N -0.099 5.099 20 C 0.024 3.976 21 H 0.133 0.867 22 C -0.207 4.207 23 C -0.182 4.182 24 C -0.147 4.147 25 C -0.136 4.136 26 H 0.103 0.897 27 C -0.207 4.207 28 C -0.179 4.179 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.172 0.828 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.116 0.884 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.155 1.059 2.233 21.299 hybrid contribution -1.957 -0.028 0.746 2.094 sum -23.112 1.030 2.979 23.326 Atomic orbital electron populations 1.21718 0.83818 1.07371 1.05180 1.25166 0.97408 0.82806 1.00937 1.74280 0.96433 1.23903 1.19564 1.74261 1.12474 1.06716 1.10040 1.38453 1.06662 1.05144 1.19544 1.06871 0.72094 0.73888 0.80716 1.93516 1.82924 1.48719 1.67552 1.93568 1.52165 1.63570 1.81259 1.30843 1.12107 1.12157 1.16165 1.19162 0.87057 0.95005 1.00950 1.21779 1.07095 1.42947 0.91996 0.92410 1.25946 0.92224 0.93972 1.06455 1.70752 1.34791 1.43977 1.04277 0.83455 0.75750 0.77030 0.73544 1.21181 1.20754 1.21351 1.46222 1.04593 1.08902 1.50154 1.21937 0.96426 0.76441 1.02788 0.86670 1.22801 1.01905 1.01711 0.94273 1.21952 0.97703 1.02052 0.96522 1.21589 0.93838 1.00678 0.98620 1.21638 0.96664 1.01048 0.94300 0.89657 1.21890 0.94517 1.02464 1.01816 1.22436 0.93448 1.04301 0.97680 0.89516 0.88693 0.85200 0.84906 0.82823 0.95622 0.95079 0.91789 0.89330 0.87359 0.88679 0.91672 0.91073 0.91163 0.92240 0.91966 0.91987 0.88357 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 7.85 36.01 0.28 -0.68 16 2 C 0.20 2.72 6.69 -154.98 -1.04 1.68 16 3 N -0.30 -5.11 12.21 32.80 0.40 -4.71 16 4 N -0.19 -3.69 12.16 30.35 0.37 -3.32 16 5 C -0.36 -6.24 6.66 -89.94 -0.60 -6.84 16 6 S 2.49 47.14 4.50 -107.50 -0.48 46.66 16 7 O -0.93 -17.55 14.88 -57.54 -0.86 -18.40 16 8 O -0.91 -20.45 17.91 -57.54 -1.03 -21.48 16 9 C -0.58 -10.84 4.17 37.16 0.16 -10.69 16 10 C 0.02 0.42 4.29 -27.88 -0.12 0.30 16 11 C -0.60 -15.71 9.11 -34.44 -0.31 -16.02 16 12 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 13 C 0.02 0.53 5.46 -17.82 -0.10 0.43 16 14 N -0.90 -26.49 13.65 55.43 0.76 -25.74 16 15 Si 1.07 23.85 29.90 -169.99 -5.08 18.77 16 16 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.29 -5.94 7.11 56.52 0.40 -5.54 16 19 N -0.41 -5.67 2.19 -107.25 -0.23 -5.90 16 20 C 0.13 1.35 2.95 -67.93 -0.20 1.15 16 21 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 22 C -0.17 -1.99 4.38 -26.73 -0.12 -2.11 16 23 C -0.15 -1.66 3.82 -26.73 -0.10 -1.77 16 24 C -0.11 -0.93 5.20 -26.73 -0.14 -1.07 16 25 C -0.12 -0.85 1.53 -90.62 -0.14 -0.99 16 26 H 0.09 0.75 4.78 -51.93 -0.25 0.50 16 27 C -0.15 -0.75 8.93 37.16 0.33 -0.42 16 28 C -0.14 -0.96 4.11 -26.73 -0.11 -1.07 16 29 H 0.09 0.53 7.98 -51.93 -0.41 0.12 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.13 0.78 1.20 -52.33 -0.06 0.71 16 32 H 0.13 2.34 8.14 -51.92 -0.42 1.92 16 33 H 0.15 2.50 2.46 -51.92 -0.13 2.38 16 34 H 0.03 0.62 8.01 -51.93 -0.42 0.20 16 35 H 0.03 0.79 8.01 -51.93 -0.42 0.37 16 36 H 0.27 7.93 7.22 -40.82 -0.29 7.63 16 37 H 0.09 1.29 1.98 -33.99 -0.07 1.22 16 38 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 1.15 7.37 -51.93 -0.38 0.77 16 40 H 0.06 0.84 6.10 -51.93 -0.32 0.52 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.23 7.21 -51.93 -0.37 -0.15 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.09 0.49 5.22 -51.93 -0.27 0.21 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -35.48 352.44 -9.45 -44.93 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.40 Total: 1.97 kcal Atomic # 6 Polarization: -35.89 SS G_CDS: -2.20 Total: -38.09 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 1.29 Total: -39.67 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -1.89 Total: -39.88 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -5.08 Total: 18.77 kcal Atomic # 16 Polarization: 47.14 SS G_CDS: -0.48 Total: 46.66 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.48 -9.45 -44.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.479 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds