Wall clock time and date at job start Tue Mar 31 2020 05:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00362 * 2 1 4 4 C 1.39201 * 119.99669 * 180.02562 * 2 1 3 5 5 C 1.39420 * 120.83223 * 174.53607 * 4 2 1 6 6 C 1.38226 * 119.26387 * 180.02562 * 5 4 2 7 7 N 1.31657 * 120.99609 * 359.72101 * 6 5 4 8 8 C 1.32831 * 121.82318 * 0.57172 * 7 6 5 9 9 C 1.48181 * 119.68720 * 179.70470 * 8 7 6 10 10 O 1.21516 * 119.99987 * 186.46006 * 9 8 7 11 11 N 1.34775 * 120.00054 * 6.45671 * 9 8 7 12 12 C 1.46501 * 119.99976 * 356.73676 * 11 9 8 13 13 C 1.50704 * 109.46847 * 277.24440 * 12 11 9 14 14 H 1.07995 * 119.99923 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99518 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00512 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99758 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47163 * 90.00000 * 17 15 13 19 19 H 1.48498 * 109.47599 * 210.00168 * 17 15 13 20 20 H 1.48504 * 109.47200 * 330.00207 * 17 15 13 21 21 C 1.46505 * 119.99853 * 176.73450 * 11 9 8 22 22 C 1.50692 * 109.47214 * 90.00315 * 21 11 9 23 23 C 1.38230 * 119.62329 * 94.97518 * 22 21 11 24 24 C 1.38624 * 119.16266 * 179.79064 * 23 22 21 25 25 C 1.38672 * 118.42022 * 0.47539 * 24 23 22 26 26 C 1.38181 * 119.16374 * 359.50166 * 25 24 23 27 27 N 1.31863 * 119.61570 * 274.99854 * 22 21 11 28 28 C 1.39038 * 120.62088 * 359.43164 * 8 7 6 29 29 H 1.09001 * 109.47361 * 185.03336 * 1 2 3 30 30 H 1.08998 * 109.46792 * 305.03088 * 1 2 3 31 31 H 1.09000 * 109.47437 * 65.03129 * 1 2 3 32 32 H 1.09000 * 109.47114 * 269.99697 * 3 2 1 33 33 H 1.08993 * 109.47034 * 30.00336 * 3 2 1 34 34 H 1.09001 * 109.46907 * 150.00069 * 3 2 1 35 35 H 1.08000 * 120.36546 * 0.02562 * 5 4 2 36 36 H 1.07997 * 119.50310 * 180.02562 * 6 5 4 37 37 H 1.08996 * 109.46727 * 37.24707 * 12 11 9 38 38 H 1.08997 * 109.46829 * 157.24445 * 12 11 9 39 39 H 0.96994 * 119.99978 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.47060 * 329.99747 * 21 11 9 41 41 H 1.09004 * 109.46853 * 210.00460 * 21 11 9 42 42 H 1.08001 * 120.40996 * 359.97438 * 23 22 21 43 43 H 1.08003 * 120.78832 * 180.23506 * 24 23 22 44 44 H 1.07998 * 120.41607 * 179.78445 * 25 24 23 45 45 H 1.07995 * 119.61721 * 180.25217 * 26 25 24 46 46 H 1.08002 * 120.51804 * 180.29378 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1609 -1.2056 -0.0005 5 6 3.5503 -1.2286 -0.1145 6 6 4.2084 -2.4441 -0.1120 7 7 3.5436 -3.5748 0.0016 8 6 2.2198 -3.6014 0.1070 9 6 1.5191 -4.9016 0.2260 10 8 0.3048 -4.9416 0.2045 11 7 2.2285 -6.0399 0.3580 12 6 3.6923 -6.0002 0.3121 13 6 4.1498 -5.9952 -1.1238 14 1 3.4230 -6.0188 -1.9222 15 6 5.4963 -5.9605 -1.4180 16 7 6.3815 -5.9323 -0.4457 17 14 6.0635 -5.9550 -3.1978 18 1 6.1761 -4.5540 -3.6772 19 1 7.3875 -6.6202 -3.2976 20 1 5.0779 -6.6865 -4.0338 21 6 1.5359 -7.3169 0.5475 22 6 1.2594 -7.9425 -0.7953 23 6 2.1429 -8.8722 -1.3109 24 6 1.8769 -9.4448 -2.5450 25 6 0.7322 -9.0519 -3.2220 26 6 -0.1048 -8.1170 -2.6434 27 7 0.1776 -7.5963 -1.4651 28 6 1.4859 -2.4205 0.1124 29 1 -0.3634 -1.0237 0.0902 30 1 -0.3633 0.5899 0.8415 31 1 -0.3634 0.4338 -0.9316 32 1 2.3793 1.5833 -1.0277 33 1 1.6086 2.0283 0.5139 34 1 3.1500 1.1382 0.5138 35 1 4.1061 -0.3069 -0.2038 36 1 5.2846 -2.4664 -0.1997 37 1 4.0470 -5.0976 0.8097 38 1 4.0955 -6.8769 0.8189 39 1 7.3288 -5.9083 -0.6528 40 1 0.5945 -7.1457 1.0694 41 1 2.1622 -7.9858 1.1379 42 1 3.0276 -9.1510 -0.7578 43 1 2.5473 -10.1767 -2.9708 44 1 0.4955 -9.4747 -4.1872 45 1 -1.0003 -7.8087 -3.1623 46 1 0.4099 -2.4439 0.2029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097101910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:41 Heat of formation + Delta-G solvation = 84.293323 kcal Electronic energy + Delta-G solvation = -29990.379218 eV Core-core repulsion = 26074.840768 eV Total energy + Delta-G solvation = -3915.538450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.17128 -39.63217 -38.29965 -36.53634 -35.00924 -32.58940 -31.91041 -31.46664 -30.83414 -30.55258 -28.33496 -27.39061 -26.08429 -25.17091 -23.36903 -23.02907 -22.46528 -21.69103 -21.22455 -18.90459 -17.11987 -16.63687 -16.43362 -16.20375 -15.90455 -15.41771 -15.25226 -15.12727 -15.02243 -14.69214 -14.21904 -14.08066 -13.90728 -13.68429 -13.32670 -13.03980 -12.79057 -12.68642 -12.61452 -12.31089 -12.20921 -12.08675 -11.95243 -11.55554 -11.26082 -11.23017 -11.00758 -10.79971 -10.65623 -10.23338 -10.06652 -9.55276 -9.37720 -9.23032 -8.89228 -8.60030 -8.53304 -8.43628 -7.91877 -7.53054 -7.38077 -5.90333 -3.86716 1.37354 1.58235 1.80857 2.02229 3.10394 3.32957 3.39615 3.44047 3.59544 3.92614 4.45093 4.53122 4.64681 4.83589 4.92085 5.01227 5.06056 5.22889 5.23457 5.26078 5.37537 5.42451 5.46186 5.50416 5.51259 5.55057 5.62409 5.63060 5.79776 5.82196 5.94261 6.01044 6.19486 6.22520 6.26042 6.29748 6.42411 6.60121 6.66538 6.89632 7.01769 7.18667 7.25217 7.49743 7.65723 7.94976 8.03732 8.40422 8.44514 8.57358 8.71584 9.08540 9.18191 9.71910 11.18165 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009875 B = 0.004661 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.841230 B = 6005.327830 C = 7729.109775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.635 5.635 3 C 0.097 3.903 4 C 0.227 3.773 5 C -0.240 4.240 6 C 0.133 3.867 7 N -0.417 5.417 8 C 0.123 3.877 9 C 0.567 3.433 10 O -0.550 6.550 11 N -0.573 5.573 12 C 0.226 3.774 13 C -0.481 4.481 14 H 0.045 0.955 15 C 0.070 3.930 16 N -0.893 5.893 17 Si 0.877 3.123 18 H -0.284 1.284 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.167 3.833 22 C 0.125 3.875 23 C -0.134 4.134 24 C -0.083 4.083 25 C -0.182 4.182 26 C 0.087 3.913 27 N -0.460 5.460 28 C -0.199 4.199 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.126 0.874 36 H 0.155 0.845 37 H 0.091 0.909 38 H 0.021 0.979 39 H 0.257 0.743 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.136 0.864 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.146 0.854 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.517 5.724 1.006 9.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.348 5.348 3 C -0.046 4.046 4 C 0.119 3.881 5 C -0.265 4.265 6 C -0.025 4.025 7 N -0.130 5.130 8 C -0.015 4.015 9 C 0.354 3.646 10 O -0.429 6.429 11 N -0.303 5.303 12 C 0.107 3.893 13 C -0.520 4.520 14 H 0.064 0.936 15 C -0.131 4.131 16 N -0.534 5.534 17 Si 0.705 3.295 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.204 1.204 21 C 0.043 3.957 22 C -0.014 4.014 23 C -0.155 4.155 24 C -0.109 4.109 25 C -0.202 4.202 26 C -0.070 4.070 27 N -0.169 5.169 28 C -0.224 4.224 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.144 0.856 36 H 0.172 0.828 37 H 0.108 0.892 38 H 0.039 0.961 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.154 0.846 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.163 0.837 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.157 5.667 1.429 10.034 hybrid contribution 0.833 0.338 -1.960 2.156 sum -7.324 6.004 -0.531 9.486 Atomic orbital electron populations 1.21706 0.79438 1.03585 1.00699 1.46105 1.05047 1.02910 1.80761 1.21572 0.97189 0.84820 1.01059 1.17861 0.91328 0.85721 0.93235 1.21813 0.92672 1.00332 1.11678 1.22800 1.00655 0.86671 0.92419 1.68812 1.06327 1.27367 1.10481 1.21010 0.90505 0.92923 0.97075 1.17913 0.86029 0.83539 0.77165 1.90705 1.13148 1.86957 1.52072 1.48211 1.10250 1.03818 1.67974 1.20228 0.71128 0.99758 0.98163 1.21153 0.91178 1.48043 0.91673 0.93641 1.24664 0.96568 0.95974 0.95891 1.69916 1.01021 1.51862 1.30586 0.86847 0.77871 0.78028 0.86713 1.21005 1.21456 1.20408 1.20198 0.98484 0.85739 0.91279 1.21641 0.89880 0.92554 0.97302 1.21991 0.99634 0.97219 0.96622 1.21489 0.96255 0.98645 0.94540 1.22023 0.96690 1.00504 1.01027 1.22632 0.98838 0.93571 0.92005 1.67571 1.18866 1.22993 1.07453 1.21525 1.01205 0.90677 1.09024 0.89959 0.92718 0.93094 0.93540 0.91721 0.91265 0.85603 0.82767 0.89228 0.96119 0.93301 0.89385 0.89270 0.84573 0.85443 0.85709 0.83664 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.95 10.63 59.85 0.64 1.58 16 2 N -0.63 -8.12 3.40 -187.37 -0.64 -8.75 16 3 C 0.10 0.92 10.14 59.85 0.61 1.52 16 4 C 0.23 3.65 6.56 -83.62 -0.55 3.10 16 5 C -0.24 -3.80 9.23 -39.15 -0.36 -4.16 16 6 C 0.13 2.50 11.17 -17.63 -0.20 2.31 16 7 N -0.42 -9.14 4.98 -9.89 -0.05 -9.19 16 8 C 0.12 2.64 6.62 -83.05 -0.55 2.09 16 9 C 0.57 12.94 7.58 -12.18 -0.09 12.84 16 10 O -0.55 -13.08 15.95 5.35 0.09 -12.99 16 11 N -0.57 -12.71 2.46 -177.42 -0.44 -13.15 16 12 C 0.23 5.46 4.81 -5.19 -0.02 5.43 16 13 C -0.48 -12.63 7.98 -34.44 -0.27 -12.91 16 14 H 0.05 1.30 7.81 -52.49 -0.41 0.89 16 15 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 16 N -0.89 -24.34 13.29 55.43 0.74 -23.60 16 17 Si 0.88 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 C 0.17 3.24 5.73 -5.19 -0.03 3.21 16 22 C 0.13 2.47 6.36 -82.59 -0.53 1.94 16 23 C -0.13 -2.42 9.72 -39.44 -0.38 -2.81 16 24 C -0.08 -1.33 10.18 -39.28 -0.40 -1.73 16 25 C -0.18 -2.78 10.11 -39.44 -0.40 -3.18 16 26 C 0.09 1.48 11.18 -17.55 -0.20 1.28 16 27 N -0.46 -9.29 10.27 -9.48 -0.10 -9.39 16 28 C -0.20 -3.67 8.89 -38.83 -0.35 -4.02 16 29 H 0.08 0.97 5.39 -51.93 -0.28 0.69 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 34 H 0.07 0.63 6.49 -51.93 -0.34 0.29 16 35 H 0.13 1.61 6.42 -52.49 -0.34 1.27 16 36 H 0.16 2.76 8.06 -52.49 -0.42 2.34 16 37 H 0.09 2.28 5.22 -52.46 -0.27 2.01 16 38 H 0.02 0.52 7.81 -51.93 -0.41 0.11 16 39 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.09 1.68 7.47 -51.93 -0.39 1.29 16 41 H 0.09 1.49 7.75 -51.93 -0.40 1.09 16 42 H 0.14 2.35 8.06 -52.49 -0.42 1.92 16 43 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 44 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 45 H 0.15 2.05 8.06 -52.49 -0.42 1.62 16 46 H 0.14 2.43 5.46 -52.49 -0.29 2.15 16 LS Contribution 384.49 15.07 5.79 5.79 Total: -1.00 -32.79 384.49 -8.86 -41.66 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.06 Total: 5.05 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -3.18 Total: 8.26 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -0.48 Total: -64.08 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.09 Total: -12.99 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.79 -8.86 -41.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097101910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.950 kcal (2) G-P(sol) polarization free energy of solvation -32.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds