Wall clock time and date at job start Tue Mar 31 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00362 * 2 1 4 4 C 1.39201 * 119.99669 * 180.02562 * 2 1 3 5 5 C 1.39420 * 120.83223 * 174.53607 * 4 2 1 6 6 C 1.38226 * 119.26387 * 180.02562 * 5 4 2 7 7 N 1.31657 * 120.99609 * 359.72101 * 6 5 4 8 8 C 1.32831 * 121.82318 * 0.57172 * 7 6 5 9 9 C 1.48181 * 119.68720 * 179.70470 * 8 7 6 10 10 O 1.21516 * 119.99987 * 186.46006 * 9 8 7 11 11 N 1.34775 * 120.00054 * 6.45671 * 9 8 7 12 12 C 1.46501 * 119.99976 * 356.73676 * 11 9 8 13 13 C 1.50704 * 109.46847 * 277.24440 * 12 11 9 14 14 H 1.07995 * 119.99923 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99518 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00512 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99758 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47163 * 90.00000 * 17 15 13 19 19 H 1.48498 * 109.47599 * 210.00168 * 17 15 13 20 20 H 1.48504 * 109.47200 * 330.00207 * 17 15 13 21 21 C 1.46505 * 119.99853 * 176.73450 * 11 9 8 22 22 C 1.50692 * 109.47214 * 90.00315 * 21 11 9 23 23 C 1.38230 * 119.62329 * 94.97518 * 22 21 11 24 24 C 1.38624 * 119.16266 * 179.79064 * 23 22 21 25 25 C 1.38672 * 118.42022 * 0.47539 * 24 23 22 26 26 C 1.38181 * 119.16374 * 359.50166 * 25 24 23 27 27 N 1.31863 * 119.61570 * 274.99854 * 22 21 11 28 28 C 1.39038 * 120.62088 * 359.43164 * 8 7 6 29 29 H 1.09001 * 109.47361 * 185.03336 * 1 2 3 30 30 H 1.08998 * 109.46792 * 305.03088 * 1 2 3 31 31 H 1.09000 * 109.47437 * 65.03129 * 1 2 3 32 32 H 1.09000 * 109.47114 * 269.99697 * 3 2 1 33 33 H 1.08993 * 109.47034 * 30.00336 * 3 2 1 34 34 H 1.09001 * 109.46907 * 150.00069 * 3 2 1 35 35 H 1.08000 * 120.36546 * 0.02562 * 5 4 2 36 36 H 1.07997 * 119.50310 * 180.02562 * 6 5 4 37 37 H 1.08996 * 109.46727 * 37.24707 * 12 11 9 38 38 H 1.08997 * 109.46829 * 157.24445 * 12 11 9 39 39 H 0.96994 * 119.99978 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.47060 * 329.99747 * 21 11 9 41 41 H 1.09004 * 109.46853 * 210.00460 * 21 11 9 42 42 H 1.08001 * 120.40996 * 359.97438 * 23 22 21 43 43 H 1.08003 * 120.78832 * 180.23506 * 24 23 22 44 44 H 1.07998 * 120.41607 * 179.78445 * 25 24 23 45 45 H 1.07995 * 119.61721 * 180.25217 * 26 25 24 46 46 H 1.08002 * 120.51804 * 180.29378 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1609 -1.2056 -0.0005 5 6 3.5503 -1.2286 -0.1145 6 6 4.2084 -2.4441 -0.1120 7 7 3.5436 -3.5748 0.0016 8 6 2.2198 -3.6014 0.1070 9 6 1.5191 -4.9016 0.2260 10 8 0.3048 -4.9416 0.2045 11 7 2.2285 -6.0399 0.3580 12 6 3.6923 -6.0002 0.3121 13 6 4.1498 -5.9952 -1.1238 14 1 3.4230 -6.0188 -1.9222 15 6 5.4963 -5.9605 -1.4180 16 7 6.3815 -5.9323 -0.4457 17 14 6.0635 -5.9550 -3.1978 18 1 6.1761 -4.5540 -3.6772 19 1 7.3875 -6.6202 -3.2976 20 1 5.0779 -6.6865 -4.0338 21 6 1.5359 -7.3169 0.5475 22 6 1.2594 -7.9425 -0.7953 23 6 2.1429 -8.8722 -1.3109 24 6 1.8769 -9.4448 -2.5450 25 6 0.7322 -9.0519 -3.2220 26 6 -0.1048 -8.1170 -2.6434 27 7 0.1776 -7.5963 -1.4651 28 6 1.4859 -2.4205 0.1124 29 1 -0.3634 -1.0237 0.0902 30 1 -0.3633 0.5899 0.8415 31 1 -0.3634 0.4338 -0.9316 32 1 2.3793 1.5833 -1.0277 33 1 1.6086 2.0283 0.5139 34 1 3.1500 1.1382 0.5138 35 1 4.1061 -0.3069 -0.2038 36 1 5.2846 -2.4664 -0.1997 37 1 4.0470 -5.0976 0.8097 38 1 4.0955 -6.8769 0.8189 39 1 7.3288 -5.9083 -0.6528 40 1 0.5945 -7.1457 1.0694 41 1 2.1622 -7.9858 1.1379 42 1 3.0276 -9.1510 -0.7578 43 1 2.5473 -10.1767 -2.9708 44 1 0.4955 -9.4747 -4.1872 45 1 -1.0003 -7.8087 -3.1623 46 1 0.4099 -2.4439 0.2029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097101910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:40 Heat of formation + Delta-G solvation = 65.414786 kcal Electronic energy + Delta-G solvation = -29991.197853 eV Core-core repulsion = 26074.840768 eV Total energy + Delta-G solvation = -3916.357084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.65915 -40.98272 -39.83352 -37.75615 -36.74535 -34.47861 -33.33463 -32.92121 -32.19246 -31.87598 -29.32749 -29.17012 -27.64782 -26.31749 -25.02995 -24.40778 -24.10168 -23.06027 -22.56051 -20.39109 -18.66491 -18.24412 -18.05410 -17.63074 -17.29680 -16.82676 -16.73128 -16.48687 -16.32995 -16.07527 -15.85401 -15.58070 -15.28556 -14.97142 -14.75831 -14.41754 -14.28860 -14.02321 -13.96649 -13.75764 -13.41369 -13.31910 -13.14200 -13.03930 -12.94077 -12.73808 -12.60319 -12.48350 -12.20305 -11.97548 -11.58075 -11.45186 -11.01400 -10.70419 -10.42963 -10.30035 -10.06424 -9.89851 -9.58077 -9.22455 -8.54097 -7.95153 -5.95980 -0.09652 0.23963 0.48567 0.65271 1.38300 1.41953 1.48825 1.96303 2.06566 2.38069 2.53491 3.06047 3.13703 3.39240 3.47864 3.51353 3.80521 3.91264 3.97892 4.05495 4.19626 4.25182 4.31884 4.32876 4.40698 4.49519 4.52717 4.56835 4.62633 4.75778 4.79360 4.82327 4.86023 4.92666 4.94318 5.00460 5.06296 5.09739 5.29192 5.35013 5.55563 5.68902 5.88626 5.99242 6.10667 6.23288 6.35982 6.41103 6.61196 7.02644 7.19953 7.22248 7.47535 7.64883 9.12527 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009875 B = 0.004661 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.841230 B = 6005.327830 C = 7729.109775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.632 5.632 3 C 0.088 3.912 4 C 0.234 3.766 5 C -0.223 4.223 6 C 0.116 3.884 7 N -0.456 5.456 8 C 0.094 3.906 9 C 0.558 3.442 10 O -0.570 6.570 11 N -0.575 5.575 12 C 0.243 3.757 13 C -0.471 4.471 14 H 0.017 0.983 15 C 0.039 3.961 16 N -0.913 5.913 17 Si 0.923 3.077 18 H -0.284 1.284 19 H -0.280 1.280 20 H -0.285 1.285 21 C 0.163 3.837 22 C 0.102 3.898 23 C -0.150 4.150 24 C -0.087 4.087 25 C -0.171 4.171 26 C 0.072 3.928 27 N -0.497 5.497 28 C -0.203 4.203 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.163 0.837 36 H 0.157 0.843 37 H 0.082 0.918 38 H 0.009 0.991 39 H 0.259 0.741 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.136 0.864 43 H 0.158 0.842 44 H 0.166 0.834 45 H 0.171 0.829 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.574 7.263 -0.425 10.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.343 5.343 3 C -0.053 4.053 4 C 0.123 3.877 5 C -0.248 4.248 6 C -0.042 4.042 7 N -0.170 5.170 8 C -0.043 4.043 9 C 0.346 3.654 10 O -0.451 6.451 11 N -0.304 5.304 12 C 0.124 3.876 13 C -0.510 4.510 14 H 0.035 0.965 15 C -0.160 4.160 16 N -0.554 5.554 17 Si 0.752 3.248 18 H -0.211 1.211 19 H -0.205 1.205 20 H -0.211 1.211 21 C 0.040 3.960 22 C -0.036 4.036 23 C -0.170 4.170 24 C -0.112 4.112 25 C -0.190 4.190 26 C -0.085 4.085 27 N -0.207 5.207 28 C -0.229 4.229 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.180 0.820 36 H 0.175 0.825 37 H 0.099 0.901 38 H 0.027 0.973 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.126 0.874 42 H 0.154 0.846 43 H 0.176 0.824 44 H 0.184 0.816 45 H 0.188 0.812 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.227 7.229 0.003 10.952 hybrid contribution 0.744 -0.013 -1.547 1.716 sum -7.483 7.217 -1.543 10.510 Atomic orbital electron populations 1.21879 0.78259 1.03202 1.02640 1.46452 1.06055 1.02763 1.79067 1.21856 0.97677 0.83595 1.02209 1.17917 0.91597 0.86316 0.91898 1.22013 0.92678 1.00538 1.09607 1.22941 1.00873 0.87216 0.93136 1.68572 1.06718 1.29396 1.12302 1.20908 0.90837 0.93045 0.99536 1.18302 0.86036 0.84346 0.76703 1.90660 1.13796 1.87406 1.53236 1.48184 1.09568 1.04844 1.67810 1.19884 0.72274 0.98590 0.96888 1.20974 0.90654 1.47745 0.91640 0.96468 1.25079 0.96578 0.95955 0.98407 1.69980 1.01165 1.52568 1.31701 0.86120 0.77518 0.77733 0.83476 1.21083 1.20547 1.21089 1.20349 0.98360 0.85104 0.92197 1.21586 0.90758 0.93747 0.97495 1.22105 0.99498 0.97523 0.97872 1.21919 0.96993 0.98684 0.93651 1.22443 0.95423 0.99037 1.02113 1.23175 1.00126 0.93851 0.91346 1.67514 1.19619 1.24401 1.09162 1.21567 1.01270 0.90963 1.09108 0.91663 0.90197 0.91484 0.92524 0.89078 0.90695 0.81954 0.82538 0.90145 0.97335 0.93151 0.89898 0.87449 0.84601 0.82435 0.81637 0.81239 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.56 10.63 127.77 1.36 2.92 16 2 N -0.63 -14.37 3.40 -746.72 -2.54 -16.91 16 3 C 0.09 1.32 10.14 127.77 1.30 2.61 16 4 C 0.23 7.20 6.56 38.55 0.25 7.45 16 5 C -0.22 -6.71 9.23 22.55 0.21 -6.50 16 6 C 0.12 4.40 11.17 84.72 0.95 5.34 16 7 N -0.46 -20.62 4.98 -185.21 -0.92 -21.54 16 8 C 0.09 4.20 6.62 41.83 0.28 4.47 16 9 C 0.56 26.78 7.58 86.89 0.66 27.44 16 10 O -0.57 -28.46 15.95 -3.76 -0.06 -28.52 16 11 N -0.58 -26.82 2.46 -833.53 -2.05 -28.88 16 12 C 0.24 12.26 4.81 85.63 0.41 12.67 16 13 C -0.47 -25.40 7.98 25.60 0.20 -25.19 16 14 H 0.02 1.01 7.81 -2.91 -0.02 0.99 16 15 C 0.04 2.06 5.46 84.65 0.46 2.53 16 16 N -0.91 -50.17 13.29 21.45 0.28 -49.88 16 17 Si 0.92 43.78 29.54 68.60 2.03 45.81 16 18 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 21 C 0.16 6.67 5.73 85.63 0.49 7.16 16 22 C 0.10 4.16 6.36 42.55 0.27 4.43 16 23 C -0.15 -5.46 9.72 22.36 0.22 -5.24 16 24 C -0.09 -2.65 10.18 22.47 0.23 -2.42 16 25 C -0.17 -4.82 10.11 22.36 0.23 -4.60 16 26 C 0.07 2.41 11.18 84.67 0.95 3.35 16 27 N -0.50 -20.55 10.27 -183.89 -1.89 -22.44 16 28 C -0.20 -7.59 8.89 22.75 0.20 -7.39 16 29 H 0.06 1.48 5.39 -2.39 -0.01 1.46 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 0.93 8.07 -2.39 -0.02 0.91 16 34 H 0.07 1.06 6.49 -2.39 -0.02 1.04 16 35 H 0.16 3.59 6.42 -2.91 -0.02 3.58 16 36 H 0.16 5.65 8.06 -2.91 -0.02 5.62 16 37 H 0.08 4.29 5.22 -3.44 -0.02 4.27 16 38 H 0.01 0.45 7.81 -2.39 -0.02 0.43 16 39 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 40 H 0.08 3.38 7.47 -2.39 -0.02 3.37 16 41 H 0.11 3.80 7.75 -2.38 -0.02 3.79 16 42 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 43 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 44 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 45 H 0.17 4.56 8.06 -2.91 -0.02 4.53 16 46 H 0.14 5.04 5.46 -2.91 -0.02 5.03 16 Total: -1.00 -73.08 384.49 4.51 -68.58 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 1.00 Total: 24.75 kcal Atomic # 6 Polarization: 20.38 SS G_CDS: 8.66 Total: 29.03 kcal Atomic # 7 Polarization: -132.54 SS G_CDS: -7.12 Total: -139.66 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.06 Total: -28.52 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -73.08 4.51 -68.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097101910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.992 kcal (2) G-P(sol) polarization free energy of solvation -73.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds