Wall clock time and date at job start Tue Mar 31 2020 05:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36931 * 119.99878 * 2 1 4 4 H 1.07998 * 120.00191 * 203.09439 * 3 2 1 5 5 C 1.38808 * 120.00150 * 23.10176 * 3 2 1 6 6 N 1.31623 * 120.00217 * 11.87751 * 5 3 2 7 7 Si 1.86800 * 120.00106 * 191.88281 * 5 3 2 8 8 H 1.48493 * 109.47126 * 59.99715 * 7 5 3 9 9 H 1.48497 * 109.47309 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47243 * 299.99739 * 7 5 3 11 11 S 1.65598 * 119.99877 * 180.02562 * 2 1 3 12 12 O 1.42098 * 106.40457 * 203.53953 * 11 2 1 13 13 O 1.42105 * 106.40653 * 336.46265 * 11 2 1 14 14 C 1.76207 * 107.21755 * 90.00256 * 11 2 1 15 15 C 1.38306 * 119.91607 * 269.72391 * 14 11 2 16 16 C 1.38082 * 120.07687 * 179.76941 * 15 14 11 17 17 C 1.38975 * 119.92056 * 0.50249 * 16 15 14 18 18 S 1.76202 * 120.08194 * 179.72721 * 17 16 15 19 19 C 1.81397 * 102.99693 * 0.02562 * 18 17 16 20 20 F 1.39902 * 109.47298 * 60.00486 * 19 18 17 21 21 F 1.39908 * 109.46914 * 179.97438 * 19 18 17 22 22 F 1.39896 * 109.47310 * 299.99773 * 19 18 17 23 23 C 1.38973 * 119.83891 * 359.75007 * 17 16 15 24 24 C 1.38081 * 119.92142 * 359.97438 * 23 17 16 25 25 H 1.08996 * 109.47187 * 275.05580 * 1 2 3 26 26 H 1.09001 * 109.47196 * 35.05693 * 1 2 3 27 27 H 1.09001 * 109.46796 * 155.05380 * 1 2 3 28 28 H 0.97000 * 120.00147 * 179.97438 * 6 5 3 29 29 H 1.08004 * 119.96115 * 359.97438 * 15 14 11 30 30 H 1.07998 * 120.03898 * 180.25510 * 16 15 14 31 31 H 1.07995 * 120.04087 * 179.97438 * 23 17 16 32 32 H 1.07996 * 119.96343 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1647 1.2234 -0.3669 5 6 1.5391 2.3398 0.4717 6 7 0.4021 2.2608 1.1299 7 14 2.3311 4.0049 0.1721 8 1 2.4572 4.2373 -1.2891 9 1 1.4869 5.0695 0.7711 10 1 3.6786 4.0315 0.7956 11 16 2.2930 -1.4341 -0.0006 12 8 3.5759 -1.1571 0.5439 13 8 1.4113 -2.4068 0.5433 14 6 2.5538 -1.8850 -1.6839 15 6 1.6205 -2.6657 -2.3415 16 6 1.8193 -3.0170 -3.6620 17 6 2.9638 -2.5940 -4.3272 18 16 3.2252 -3.0458 -6.0101 19 6 1.7550 -4.0342 -6.4002 20 9 0.6078 -3.2527 -6.2253 21 9 1.8243 -4.4690 -7.7282 22 9 1.6986 -5.1425 -5.5485 23 6 3.9019 -1.8140 -3.6616 24 6 3.6938 -1.4618 -2.3428 25 1 -0.3633 0.0906 1.0236 26 1 -0.3634 0.8412 -0.5903 27 1 -0.3633 -0.9318 -0.4334 28 1 -0.0244 3.0671 1.4599 29 1 0.7336 -2.9981 -1.8225 30 1 1.0881 -3.6232 -4.1761 31 1 4.7927 -1.4839 -4.1753 32 1 4.4226 -0.8561 -1.8249 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097114278.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:07 Heat of formation + Delta-G solvation = -162.163541 kcal Electronic energy + Delta-G solvation = -25199.702399 eV Core-core repulsion = 20772.306163 eV Total energy + Delta-G solvation = -4427.396236 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 341.015 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -50.76803 -48.38278 -48.27883 -39.13264 -36.40629 -35.51673 -34.97320 -31.52888 -31.26276 -31.17367 -27.06764 -26.31952 -23.70316 -23.33517 -23.04006 -19.96270 -19.35665 -19.14307 -18.75680 -18.01544 -17.38326 -16.68911 -16.39797 -15.59329 -15.20034 -15.16369 -14.90459 -14.69084 -14.51304 -14.46089 -14.39709 -14.30240 -14.12168 -13.49179 -13.43415 -13.20172 -12.74032 -12.31672 -11.93615 -11.61485 -11.32695 -11.27669 -11.22044 -11.13512 -10.92660 -10.70874 -10.58014 -10.41889 -10.34557 -10.05486 -9.18615 -9.12776 -8.37884 -7.97191 -6.16290 -3.89831 -0.44916 0.53466 1.10041 1.18409 1.31095 2.54738 3.22114 3.23647 3.28354 3.30508 3.34865 3.37137 4.04678 4.38714 4.47798 4.59739 4.60245 4.97401 5.13048 5.21714 5.39209 5.48581 5.81304 5.82240 5.88683 6.16384 6.21581 6.63315 6.85305 7.13670 7.47195 7.63189 8.42319 8.98818 9.35648 10.87472 Molecular weight = 341.02amu Principal moments of inertia in cm(-1) A = 0.017738 B = 0.003442 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.175884 B = 8132.594250 C = 8529.023048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.133 3.867 2 N -0.847 5.847 3 C -0.323 4.323 4 H 0.097 0.903 5 C 0.043 3.957 6 N -0.885 5.885 7 Si 0.917 3.083 8 H -0.276 1.276 9 H -0.285 1.285 10 H -0.273 1.273 11 S 2.672 3.328 12 O -0.959 6.959 13 O -0.978 6.978 14 C -0.657 4.657 15 C -0.001 4.001 16 C -0.148 4.148 17 C -0.069 4.069 18 S -0.023 6.023 19 C 0.451 3.549 20 F -0.160 7.160 21 F -0.147 7.147 22 F -0.162 7.162 23 C -0.107 4.107 24 C 0.004 3.996 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.023 0.977 28 H 0.265 0.735 29 H 0.147 0.853 30 H 0.129 0.871 31 H 0.139 0.861 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.726 -9.622 -14.651 17.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 N -0.682 5.682 3 C -0.453 4.453 4 H 0.115 0.885 5 C -0.162 4.162 6 N -0.525 5.525 7 Si 0.743 3.257 8 H -0.202 1.202 9 H -0.210 1.210 10 H -0.198 1.198 11 S 2.758 3.242 12 O -0.949 6.949 13 O -0.968 6.968 14 C -0.740 4.740 15 C -0.022 4.022 16 C -0.171 4.171 17 C -0.182 4.182 18 S 0.213 5.787 19 C 0.289 3.711 20 F -0.142 7.142 21 F -0.129 7.129 22 F -0.143 7.143 23 C -0.131 4.131 24 C -0.017 4.017 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.165 0.835 30 H 0.147 0.853 31 H 0.157 0.843 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.683 -9.848 -14.763 18.124 hybrid contribution -1.014 0.588 -0.359 1.226 sum 2.669 -9.259 -15.122 17.931 Atomic orbital electron populations 1.21169 0.79589 0.97811 1.02712 1.52687 1.12901 1.18014 1.84591 1.19046 0.98784 0.84867 1.42601 0.88534 1.25111 0.96545 0.99106 0.95465 1.70047 1.18092 1.28854 1.35482 0.86182 0.79124 0.81835 0.78521 1.20161 1.21007 1.19786 1.02407 0.73780 0.73262 0.74708 1.93497 1.41057 1.84738 1.75594 1.93500 1.66252 1.61013 1.76073 1.32133 1.02388 1.09593 1.29850 1.20848 0.97086 0.91383 0.92860 1.21375 0.96554 1.02719 0.96473 1.21637 0.99303 1.02477 0.94796 1.86662 1.20733 1.60830 1.10442 1.22871 0.88969 0.82048 0.77209 1.93350 1.52600 1.73536 1.94724 1.93270 1.96062 1.89835 1.33735 1.93339 1.96587 1.54654 1.69753 1.20781 0.98685 0.98650 0.94968 1.20954 0.94687 0.93280 0.92816 0.91675 0.91899 0.95831 0.92478 0.83518 0.85341 0.84288 0.82962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 80. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.00 8.60 59.85 0.51 3.52 16 2 N -0.85 -20.03 3.31 -66.69 -0.22 -20.25 16 3 C -0.32 -8.21 9.17 -15.06 -0.14 -8.35 16 4 H 0.10 2.34 7.68 -52.49 -0.40 1.93 16 5 C 0.04 1.09 5.12 -17.43 -0.09 1.00 16 6 N -0.89 -23.51 10.65 55.49 0.59 -22.92 16 7 Si 0.92 19.95 29.57 -169.99 -5.03 14.93 16 8 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 11 S 2.67 56.79 5.60 -107.50 -0.60 56.18 16 12 O -0.96 -22.38 16.37 -57.17 -0.94 -23.32 16 13 O -0.98 -21.80 16.24 -57.17 -0.93 -22.73 16 14 C -0.66 -11.46 5.98 -39.53 -0.24 -11.70 16 15 C 0.00 -0.01 9.51 -39.61 -0.38 -0.39 16 16 C -0.15 -2.05 8.69 -39.37 -0.34 -2.39 16 17 C -0.07 -0.91 6.11 -39.04 -0.24 -1.15 16 18 S -0.02 -0.24 21.96 -107.50 -2.36 -2.60 16 19 C 0.45 4.71 2.98 101.05 0.30 5.01 16 20 F -0.16 -1.80 15.63 2.25 0.04 -1.76 16 21 F -0.15 -1.45 17.36 2.25 0.04 -1.41 16 22 F -0.16 -1.75 15.62 2.25 0.04 -1.72 16 23 C -0.11 -1.40 9.79 -39.37 -0.39 -1.79 16 24 C 0.00 0.06 9.51 -39.61 -0.38 -0.32 16 25 H 0.06 1.57 7.35 -51.93 -0.38 1.19 16 26 H 0.06 1.45 7.31 -51.93 -0.38 1.07 16 27 H 0.02 0.45 7.61 -51.93 -0.39 0.05 16 28 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.15 2.12 7.60 -52.48 -0.40 1.72 16 30 H 0.13 1.57 4.55 -52.49 -0.24 1.34 16 31 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.15 2.23 7.61 -52.49 -0.40 1.83 16 LS Contribution 315.16 15.07 4.75 4.75 Total: -1.00 -29.50 315.16 -8.15 -37.65 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -2.15 Total: -0.25 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -1.37 Total: -16.55 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.37 Total: -43.17 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -1.86 Total: -46.05 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.11 Total: -4.89 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.93 kcal Atomic # 16 Polarization: 56.55 SS G_CDS: -2.96 Total: 53.59 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.50 -8.15 -37.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097114278.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.517 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds