Wall clock time and date at job start Tue Mar 31 2020 05:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34813 * 125.63903 * 2 1 4 4 C 1.40792 * 107.07365 * 179.71510 * 3 2 1 5 5 C 1.36258 * 106.72049 * 0.41284 * 4 3 2 6 6 C 1.47099 * 125.95718 * 179.85465 * 5 4 3 7 7 N 1.30497 * 125.48460 * 359.74029 * 6 5 4 8 8 C 1.31326 * 116.96624 * 179.97438 * 7 6 5 9 9 C 1.33685 * 115.88080 * 359.97438 * 8 7 6 10 10 C 1.50703 * 125.87008 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.46962 * 89.98079 * 10 9 8 12 12 C 1.38848 * 120.00191 * 180.02562 * 11 10 9 13 13 C 1.39571 * 119.84448 * 359.72984 * 12 11 10 14 14 C 1.36336 * 120.16160 * 179.71686 * 13 12 11 15 15 C 1.40881 * 119.83592 * 0.55399 * 14 13 12 16 16 C 1.41144 * 120.15190 * 179.69933 * 15 14 13 17 17 H 1.08005 * 119.99509 * 204.63037 * 16 15 14 18 18 C 1.39859 * 120.00392 * 24.62815 * 16 15 14 19 19 N 1.30911 * 119.99771 * 17.95471 * 18 16 15 20 20 Si 1.86800 * 120.00154 * 197.95448 * 18 16 15 21 21 H 1.48499 * 109.47021 * 60.00240 * 20 18 16 22 22 H 1.48501 * 109.46992 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.46937 * 299.99911 * 20 18 16 24 24 C 1.40889 * 119.69191 * 359.71907 * 15 14 13 25 25 C 1.36336 * 119.83168 * 0.02562 * 24 15 14 26 26 S 1.76171 * 125.48454 * 179.71362 * 6 5 4 27 27 O 1.34281 * 125.63815 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47150 * 300.01180 * 1 2 3 30 30 H 1.09000 * 109.47470 * 60.01077 * 1 2 3 31 31 H 1.08002 * 126.46288 * 359.97438 * 3 2 1 32 32 H 1.07994 * 126.63708 * 180.29816 * 4 3 2 33 33 H 1.07996 * 122.06227 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.47429 * 209.98216 * 10 9 8 35 35 H 1.08997 * 109.47076 * 329.98472 * 10 9 8 36 36 H 0.97001 * 119.99841 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.91311 * 359.97438 * 13 12 11 38 38 H 1.08003 * 120.07757 * 180.27696 * 14 13 12 39 39 H 0.96992 * 119.99793 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.07920 * 179.97438 * 24 15 14 41 41 H 1.08004 * 119.91705 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2925 1.0956 0.0000 4 6 3.6272 0.6474 0.0067 5 6 3.5834 -0.7145 0.0011 6 6 4.7456 -1.6161 0.0019 7 7 5.9955 -1.2408 0.0033 8 6 6.9025 -2.1905 0.0043 9 6 6.4356 -3.4432 0.0043 10 6 7.2716 -4.6971 0.0059 11 7 7.5412 -5.1025 1.3877 12 6 8.2986 -6.2378 1.6430 13 6 8.7969 -6.9937 0.5807 14 6 9.5462 -8.1064 0.8239 15 6 9.8073 -8.4992 2.1514 16 6 10.5769 -9.6536 2.4108 17 1 10.4600 -10.1817 3.3456 18 6 11.4909 -10.1136 1.4574 19 7 11.8960 -9.3166 0.5010 20 14 12.1337 -11.8652 1.5485 21 1 10.9974 -12.8155 1.4439 22 1 13.0829 -12.1028 0.4315 23 1 12.8323 -12.0693 2.8429 24 6 9.2963 -7.7346 3.2187 25 6 8.5529 -6.6213 2.9606 26 16 4.6744 -3.3764 0.0017 27 8 2.2894 -1.0913 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 1.9606 2.1234 -0.0004 32 1 4.5140 1.2637 0.0130 33 1 7.9603 -1.9730 0.0051 34 1 6.7332 -5.4935 -0.5079 35 1 8.2142 -4.5060 -0.5070 36 1 7.1904 -4.5777 2.1243 37 1 8.5918 -6.6939 -0.4364 38 1 9.9348 -8.6878 0.0008 39 1 12.5296 -9.6358 -0.1604 40 1 9.4923 -8.0303 4.2389 41 1 8.1602 -6.0344 3.7778 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097115658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:07 Heat of formation + Delta-G solvation = 84.953850 kcal Electronic energy + Delta-G solvation = -24180.980591 eV Core-core repulsion = 20540.097809 eV Total energy + Delta-G solvation = -3640.882782 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.099 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.96173 -39.72978 -37.98667 -35.40492 -33.65620 -33.39814 -32.68365 -30.93340 -29.49656 -28.91998 -27.70052 -25.50920 -24.39406 -23.61819 -22.37053 -21.18446 -21.06415 -20.08580 -19.65124 -18.23585 -17.23014 -16.94770 -16.73180 -16.26244 -15.44084 -15.13061 -14.91152 -14.50240 -14.31275 -13.86599 -13.70994 -13.66127 -13.47500 -13.41193 -13.26314 -12.87232 -12.67269 -12.42622 -12.26657 -11.88216 -11.78143 -11.56106 -11.20463 -11.02563 -10.88543 -10.49461 -10.42623 -9.97026 -9.85950 -9.71552 -9.45465 -9.31025 -9.26534 -8.59216 -8.20915 -7.52802 -6.67086 -6.44872 -4.06357 -0.03152 0.96806 1.41296 1.47402 2.12897 2.16137 2.79469 2.90788 3.07459 3.13347 3.16558 3.33467 3.90409 4.03925 4.33972 4.42298 4.60681 4.65335 4.72800 4.75555 4.90650 4.97081 5.09859 5.19494 5.37884 5.54681 5.64342 5.72982 5.75482 5.84961 5.93025 6.09005 6.23388 6.27841 6.62995 6.84863 6.90413 7.17022 7.32895 7.39380 7.49867 7.65580 7.79683 8.12243 8.23882 8.43380 8.62365 8.75375 9.03552 9.11779 10.35065 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.036590 B = 0.001722 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.047537 B =16256.524892 C =16417.627869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.010 3.990 3 C -0.215 4.215 4 C -0.133 4.133 5 C 0.035 3.965 6 C 0.126 3.874 7 N -0.450 5.450 8 C 0.053 3.947 9 C -0.212 4.212 10 C 0.215 3.785 11 N -0.758 5.758 12 C 0.088 3.912 13 C -0.163 4.163 14 C -0.125 4.125 15 C 0.076 3.924 16 C -0.467 4.467 17 H 0.073 0.927 18 C 0.075 3.925 19 N -0.806 5.806 20 Si 0.904 3.096 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.268 1.268 24 C -0.187 4.187 25 C -0.154 4.154 26 S 0.132 5.868 27 O -0.167 6.167 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.156 0.844 32 H 0.160 0.840 33 H 0.183 0.817 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.386 0.614 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.277 0.723 40 H 0.092 0.908 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.676 17.952 -4.154 26.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.043 4.043 3 C -0.234 4.234 4 C -0.157 4.157 5 C -0.018 4.018 6 C -0.147 4.147 7 N -0.165 5.165 8 C -0.100 4.100 9 C -0.333 4.333 10 C 0.087 3.913 11 N -0.395 5.395 12 C -0.009 4.009 13 C -0.185 4.185 14 C -0.145 4.145 15 C 0.073 3.927 16 C -0.498 4.498 17 H 0.091 0.909 18 C -0.140 4.140 19 N -0.434 5.434 20 Si 0.729 3.271 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.192 1.192 24 C -0.207 4.207 25 C -0.176 4.176 26 S 0.389 5.611 27 O -0.063 6.063 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.174 0.826 32 H 0.177 0.823 33 H 0.200 0.800 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.219 0.781 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.088 0.912 40 H 0.110 0.890 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.249 17.341 -4.558 26.306 hybrid contribution 1.315 -0.210 0.254 1.355 sum -17.935 17.131 -4.304 25.172 Atomic orbital electron populations 1.20400 0.84451 1.04490 1.03972 1.22684 0.94102 0.83699 1.03774 1.21576 0.92323 0.99773 1.09752 1.21899 0.98547 0.92551 1.02673 1.18512 0.80364 0.91419 1.11454 1.23877 0.91809 0.92748 1.06235 1.66528 0.98170 1.36358 1.15486 1.21629 1.00380 0.86182 1.01820 1.26235 0.95887 1.00603 1.10621 1.19328 0.96054 0.88913 0.86977 1.43845 1.62032 1.29894 1.03727 1.17292 1.00095 0.90000 0.93466 1.20087 1.04357 0.98761 0.95277 1.20925 0.98950 0.96967 0.97634 1.17513 0.91796 0.92445 0.90943 1.19349 1.18655 1.09260 1.02513 0.90928 1.25801 0.95219 0.98536 0.94492 1.69845 1.25338 1.35288 1.12886 0.86452 0.78945 0.83203 0.78538 1.19069 1.20564 1.19244 1.20544 1.05559 0.96994 0.97609 1.19800 1.05042 0.99768 0.93004 1.85226 1.03919 1.04216 1.67732 1.84008 1.15257 1.35124 1.71902 0.90250 0.89185 0.89193 0.82640 0.82256 0.79993 0.91991 0.90773 0.78147 0.89390 0.86325 0.91217 0.88980 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.41 36.01 0.37 0.06 16 2 C 0.01 0.08 7.31 -35.52 -0.26 -0.18 16 3 C -0.21 -1.73 10.78 -39.83 -0.43 -2.16 16 4 C -0.13 -1.34 10.80 -39.33 -0.42 -1.77 16 5 C 0.04 0.42 7.22 -36.70 -0.26 0.15 16 6 C 0.13 1.62 7.46 -14.53 -0.11 1.51 16 7 N -0.45 -5.97 10.52 -11.54 -0.12 -6.09 16 8 C 0.05 0.66 11.14 -19.36 -0.22 0.45 16 9 C -0.21 -2.73 5.95 -35.90 -0.21 -2.94 16 10 C 0.21 3.12 5.41 -5.19 -0.03 3.09 16 11 N -0.76 -12.97 5.69 -59.67 -0.34 -13.31 16 12 C 0.09 1.88 6.67 -83.69 -0.56 1.32 16 13 C -0.16 -3.73 9.23 -39.77 -0.37 -4.10 16 14 C -0.12 -3.23 8.64 -39.27 -0.34 -3.57 16 15 C 0.08 2.04 5.57 -106.79 -0.60 1.45 16 16 C -0.47 -12.62 9.03 -37.87 -0.34 -12.96 16 17 H 0.07 1.89 7.91 -52.48 -0.41 1.48 16 18 C 0.07 1.92 5.13 -17.34 -0.09 1.84 16 19 N -0.81 -21.27 10.96 55.54 0.61 -20.66 16 20 Si 0.90 19.15 29.60 -169.99 -5.03 14.12 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 24 C -0.19 -4.60 9.74 -39.26 -0.38 -4.99 16 25 C -0.15 -3.44 9.82 -39.77 -0.39 -3.83 16 26 S 0.13 1.62 23.42 -107.50 -2.52 -0.90 16 27 O -0.17 -1.84 10.67 4.48 0.05 -1.79 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.16 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.18 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.06 0.91 7.92 -51.93 -0.41 0.50 16 35 H 0.07 1.07 7.94 -51.93 -0.41 0.66 16 36 H 0.39 6.15 8.46 -40.82 -0.35 5.80 16 37 H 0.09 1.81 6.68 -52.48 -0.35 1.46 16 38 H 0.12 3.19 6.16 -52.48 -0.32 2.86 16 39 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 40 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 41 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 370.58 15.07 5.58 5.58 Total: -1.00 -29.67 370.58 -11.18 -40.84 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -4.77 Total: 8.84 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -4.63 Total: -26.63 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.15 Total: -40.06 kcal Atomic # 8 Polarization: -1.84 SS G_CDS: 0.05 Total: -1.79 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.52 Total: -0.90 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.67 -11.18 -40.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097115658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.795 kcal (2) G-P(sol) polarization free energy of solvation -29.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds