Wall clock time and date at job start Tue Mar 31 2020 05:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34813 * 125.63903 * 2 1 4 4 C 1.40792 * 107.07365 * 179.71510 * 3 2 1 5 5 C 1.36258 * 106.72049 * 0.41284 * 4 3 2 6 6 C 1.47099 * 125.95718 * 179.85465 * 5 4 3 7 7 N 1.30497 * 125.48460 * 359.74029 * 6 5 4 8 8 C 1.31326 * 116.96624 * 179.97438 * 7 6 5 9 9 C 1.33685 * 115.88080 * 359.97438 * 8 7 6 10 10 C 1.50703 * 125.87008 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.46962 * 89.98079 * 10 9 8 12 12 C 1.38848 * 120.00191 * 180.02562 * 11 10 9 13 13 C 1.39571 * 119.84448 * 359.72984 * 12 11 10 14 14 C 1.36336 * 120.16160 * 179.71686 * 13 12 11 15 15 C 1.40881 * 119.83592 * 0.55399 * 14 13 12 16 16 C 1.41144 * 120.15190 * 179.69933 * 15 14 13 17 17 H 1.08005 * 119.99509 * 204.63037 * 16 15 14 18 18 C 1.39859 * 120.00392 * 24.62815 * 16 15 14 19 19 N 1.30911 * 119.99771 * 17.95471 * 18 16 15 20 20 Si 1.86800 * 120.00154 * 197.95448 * 18 16 15 21 21 H 1.48499 * 109.47021 * 60.00240 * 20 18 16 22 22 H 1.48501 * 109.46992 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.46937 * 299.99911 * 20 18 16 24 24 C 1.40889 * 119.69191 * 359.71907 * 15 14 13 25 25 C 1.36336 * 119.83168 * 0.02562 * 24 15 14 26 26 S 1.76171 * 125.48454 * 179.71362 * 6 5 4 27 27 O 1.34281 * 125.63815 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47150 * 300.01180 * 1 2 3 30 30 H 1.09000 * 109.47470 * 60.01077 * 1 2 3 31 31 H 1.08002 * 126.46288 * 359.97438 * 3 2 1 32 32 H 1.07994 * 126.63708 * 180.29816 * 4 3 2 33 33 H 1.07996 * 122.06227 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.47429 * 209.98216 * 10 9 8 35 35 H 1.08997 * 109.47076 * 329.98472 * 10 9 8 36 36 H 0.97001 * 119.99841 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.91311 * 359.97438 * 13 12 11 38 38 H 1.08003 * 120.07757 * 180.27696 * 14 13 12 39 39 H 0.96992 * 119.99793 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.07920 * 179.97438 * 24 15 14 41 41 H 1.08004 * 119.91705 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2925 1.0956 0.0000 4 6 3.6272 0.6474 0.0067 5 6 3.5834 -0.7145 0.0011 6 6 4.7456 -1.6161 0.0019 7 7 5.9955 -1.2408 0.0033 8 6 6.9025 -2.1905 0.0043 9 6 6.4356 -3.4432 0.0043 10 6 7.2716 -4.6971 0.0059 11 7 7.5412 -5.1025 1.3877 12 6 8.2986 -6.2378 1.6430 13 6 8.7969 -6.9937 0.5807 14 6 9.5462 -8.1064 0.8239 15 6 9.8073 -8.4992 2.1514 16 6 10.5769 -9.6536 2.4108 17 1 10.4600 -10.1817 3.3456 18 6 11.4909 -10.1136 1.4574 19 7 11.8960 -9.3166 0.5010 20 14 12.1337 -11.8652 1.5485 21 1 10.9974 -12.8155 1.4439 22 1 13.0829 -12.1028 0.4315 23 1 12.8323 -12.0693 2.8429 24 6 9.2963 -7.7346 3.2187 25 6 8.5529 -6.6213 2.9606 26 16 4.6744 -3.3764 0.0017 27 8 2.2894 -1.0913 0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 1.9606 2.1234 -0.0004 32 1 4.5140 1.2637 0.0130 33 1 7.9603 -1.9730 0.0051 34 1 6.7332 -5.4935 -0.5079 35 1 8.2142 -4.5060 -0.5070 36 1 7.1904 -4.5777 2.1243 37 1 8.5918 -6.6939 -0.4364 38 1 9.9348 -8.6878 0.0008 39 1 12.5296 -9.6358 -0.1604 40 1 9.4923 -8.0303 4.2389 41 1 8.1602 -6.0344 3.7778 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097115658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:06 Heat of formation + Delta-G solvation = 69.556737 kcal Electronic energy + Delta-G solvation = -24181.648260 eV Core-core repulsion = 20540.097809 eV Total energy + Delta-G solvation = -3641.550451 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.099 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.67875 -40.72324 -39.73021 -36.96611 -35.05426 -34.32617 -33.59263 -32.10360 -31.35571 -30.28514 -28.84613 -26.71100 -25.69666 -24.89376 -23.25876 -22.82002 -21.87600 -21.80123 -20.54929 -19.26882 -19.14931 -17.96056 -17.68316 -17.46802 -16.85306 -16.60654 -15.99487 -15.66533 -15.43819 -15.29114 -14.93260 -14.70400 -14.43948 -14.25003 -14.01362 -13.93880 -13.88503 -13.75756 -13.61506 -13.27003 -13.14269 -12.78422 -12.73472 -12.69895 -12.40337 -12.23690 -11.60400 -11.28223 -11.15578 -11.09235 -10.93144 -10.65240 -10.38568 -10.32987 -9.41002 -9.00764 -8.55481 -8.21087 -6.01710 -0.96167 0.00982 0.50852 0.63034 1.10758 1.18611 1.40672 1.41215 1.43000 1.51245 1.59852 1.87487 2.27588 2.84009 2.92674 3.17093 3.62904 3.75190 3.84399 3.90549 3.94831 4.07637 4.42629 4.49186 4.52258 4.59134 4.63063 4.70117 4.74952 4.75384 4.97144 4.98936 5.03349 5.11127 5.14908 5.26710 5.44788 5.48702 5.66116 5.78278 5.92667 5.94496 6.18418 6.37569 6.44390 6.63626 6.83422 7.06975 7.08570 7.25226 8.47876 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.036590 B = 0.001722 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.047537 B =16256.524892 C =16417.627869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.015 3.985 3 C -0.221 4.221 4 C -0.127 4.127 5 C -0.005 4.005 6 C 0.131 3.869 7 N -0.469 5.469 8 C 0.059 3.941 9 C -0.224 4.224 10 C 0.217 3.783 11 N -0.748 5.748 12 C 0.111 3.889 13 C -0.172 4.172 14 C -0.143 4.143 15 C 0.036 3.964 16 C -0.506 4.506 17 H 0.068 0.932 18 C 0.033 3.967 19 N -0.839 5.839 20 Si 0.976 3.024 21 H -0.263 1.263 22 H -0.270 1.270 23 H -0.262 1.262 24 C -0.196 4.196 25 C -0.162 4.162 26 S 0.135 5.865 27 O -0.183 6.183 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.186 0.814 32 H 0.164 0.836 33 H 0.198 0.802 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.395 0.605 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.283 0.717 40 H 0.096 0.904 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.596 19.781 -4.298 28.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.037 4.037 3 C -0.240 4.240 4 C -0.151 4.151 5 C -0.058 4.058 6 C -0.141 4.141 7 N -0.185 5.185 8 C -0.094 4.094 9 C -0.346 4.346 10 C 0.091 3.909 11 N -0.384 5.384 12 C 0.012 3.988 13 C -0.194 4.194 14 C -0.163 4.163 15 C 0.033 3.967 16 C -0.537 4.537 17 H 0.086 0.914 18 C -0.179 4.179 19 N -0.467 5.467 20 Si 0.797 3.203 21 H -0.188 1.188 22 H -0.194 1.194 23 H -0.187 1.187 24 C -0.216 4.216 25 C -0.185 4.185 26 S 0.393 5.607 27 O -0.081 6.081 28 H 0.099 0.901 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.203 0.797 32 H 0.182 0.818 33 H 0.214 0.786 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.229 0.771 37 H 0.128 0.872 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.195 19.202 -4.703 28.984 hybrid contribution 1.643 -0.467 0.293 1.733 sum -19.552 18.736 -4.410 27.437 Atomic orbital electron populations 1.20655 0.81509 1.05260 1.05931 1.23603 0.95700 0.83107 1.01314 1.21936 0.91186 1.01235 1.09608 1.22186 0.99885 0.92103 1.00955 1.18598 0.80587 0.91927 1.14652 1.24175 0.92184 0.93079 1.04705 1.66586 0.98442 1.36599 1.16867 1.21876 1.01040 0.85963 1.00519 1.25929 0.95967 0.99943 1.12748 1.19327 0.96673 0.89689 0.85254 1.43882 1.60614 1.28390 1.05518 1.17360 0.98391 0.90219 0.92801 1.20264 1.04012 0.98160 0.96925 1.20862 1.00330 0.98224 0.96905 1.17848 0.93301 0.93571 0.91988 1.19575 1.20290 1.10521 1.03340 0.91422 1.26599 0.95019 1.02478 0.93846 1.69907 1.26100 1.37049 1.13694 0.85356 0.78378 0.77674 0.78856 1.18801 1.19442 1.18691 1.20735 1.05781 0.97625 0.97437 1.20083 1.04629 0.99354 0.94389 1.85166 1.03534 1.04204 1.67837 1.84007 1.15195 1.36495 1.72354 0.90120 0.87142 0.87056 0.79711 0.81801 0.78579 0.91954 0.90234 0.77098 0.87240 0.88177 0.90700 0.88563 0.86695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.41 71.24 0.74 0.35 16 2 C 0.02 0.21 7.31 24.90 0.18 0.39 16 3 C -0.22 -2.99 10.78 22.11 0.24 -2.75 16 4 C -0.13 -2.39 10.80 22.43 0.24 -2.15 16 5 C -0.01 -0.12 7.22 24.14 0.17 0.06 16 6 C 0.13 3.27 7.46 87.22 0.65 3.92 16 7 N -0.47 -12.01 10.52 -190.42 -2.00 -14.02 16 8 C 0.06 1.41 11.14 83.73 0.93 2.34 16 9 C -0.22 -5.49 5.95 24.65 0.15 -5.34 16 10 C 0.22 5.96 5.41 85.63 0.46 6.43 16 11 N -0.75 -24.21 5.69 -342.71 -1.95 -26.16 16 12 C 0.11 4.62 6.67 38.67 0.26 4.88 16 13 C -0.17 -7.85 9.23 22.15 0.20 -7.64 16 14 C -0.14 -7.64 8.64 22.47 0.19 -7.45 16 15 C 0.04 1.99 5.57 -21.27 -0.12 1.87 16 16 C -0.51 -28.45 9.03 23.38 0.21 -28.23 16 17 H 0.07 3.69 7.91 -2.91 -0.02 3.67 16 18 C 0.03 1.73 5.13 85.22 0.44 2.16 16 19 N -0.84 -45.66 10.96 21.82 0.24 -45.42 16 20 Si 0.98 40.07 29.60 68.60 2.03 42.11 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 22 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 C -0.20 -9.79 9.74 22.48 0.22 -9.57 16 25 C -0.16 -7.10 9.82 22.15 0.22 -6.88 16 26 S 0.13 3.20 23.42 -56.49 -1.32 1.87 16 27 O -0.18 -3.84 10.67 -6.88 -0.07 -3.92 16 28 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.19 1.28 8.06 -2.91 -0.02 1.26 16 32 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 33 H 0.20 3.93 8.06 -2.91 -0.02 3.91 16 34 H 0.06 1.75 7.92 -2.39 -0.02 1.73 16 35 H 0.08 2.15 7.94 -2.39 -0.02 2.13 16 36 H 0.39 11.68 8.46 -92.71 -0.78 10.90 16 37 H 0.11 4.43 6.68 -2.91 -0.02 4.41 16 38 H 0.10 5.63 6.16 -2.91 -0.02 5.61 16 39 H 0.28 14.02 8.30 -92.71 -0.77 13.25 16 40 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 41 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -66.02 370.58 2.61 -63.41 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: 0.29 Total: 29.74 kcal Atomic # 6 Polarization: -53.01 SS G_CDS: 5.39 Total: -47.61 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -3.71 Total: -85.60 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.07 Total: -3.92 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.11 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.32 Total: 1.87 kcal Total: -66.02 2.61 -63.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097115658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.966 kcal (2) G-P(sol) polarization free energy of solvation -66.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds