Wall clock time and date at job start Tue Mar 31 2020 05:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99717 * 2 1 4 4 H 1.48499 * 109.47052 * 272.94021 * 3 2 1 5 5 H 1.48496 * 109.47285 * 32.94041 * 3 2 1 6 6 H 1.48503 * 109.46970 * 152.94104 * 3 2 1 7 7 C 1.38814 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99797 * 339.35014 * 7 2 1 9 9 N 1.36935 * 120.00088 * 159.34665 * 7 2 1 10 10 C 1.46929 * 120.62797 * 332.62882 * 9 7 2 11 11 C 1.53192 * 108.77464 * 233.58422 * 10 9 7 12 12 C 1.53032 * 109.31738 * 305.36974 * 11 10 9 13 13 C 1.53001 * 109.46411 * 181.38360 * 12 11 10 14 14 N 1.46495 * 109.47312 * 174.97154 * 13 12 11 15 15 C 1.34782 * 119.99927 * 180.27566 * 14 13 12 16 16 O 1.21583 * 119.99860 * 359.72303 * 15 14 13 17 17 C 1.47606 * 119.99801 * 179.73005 * 15 14 13 18 18 C 1.39720 * 120.07493 * 359.72147 * 17 15 14 19 19 C 1.37939 * 119.92011 * 179.74768 * 18 17 15 20 20 F 1.35102 * 119.96122 * 180.25430 * 19 18 17 21 21 C 1.39088 * 120.07648 * 0.51002 * 19 18 17 22 22 O 1.35816 * 119.92771 * 179.74400 * 21 19 18 23 23 C 1.39098 * 120.15116 * 359.76613 * 21 19 18 24 24 F 1.35096 * 119.96366 * 179.97438 * 23 21 19 25 25 C 1.37938 * 120.07544 * 359.97438 * 23 21 19 26 26 C 1.53044 * 109.52600 * 61.36922 * 12 11 10 27 27 C 1.46919 * 120.63167 * 152.61051 * 9 7 2 28 28 H 0.97003 * 120.00011 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.58346 * 113.80348 * 10 9 7 30 30 H 1.08995 * 109.70703 * 353.44603 * 10 9 7 31 31 H 1.08999 * 109.49692 * 185.41331 * 11 10 9 32 32 H 1.09004 * 109.49557 * 65.32231 * 11 10 9 33 33 H 1.08999 * 109.46358 * 301.35944 * 12 11 10 34 34 H 1.08998 * 109.47125 * 54.97123 * 13 12 11 35 35 H 1.09000 * 109.46859 * 294.97551 * 13 12 11 36 36 H 0.96997 * 120.00031 * 0.02562 * 14 13 12 37 37 H 1.07997 * 120.04099 * 0.02562 * 18 17 15 38 38 H 0.96696 * 114.00349 * 270.01860 * 22 21 19 39 39 H 1.07996 * 120.03439 * 179.97438 * 25 23 21 40 40 H 1.09003 * 109.49858 * 58.58098 * 26 12 11 41 41 H 1.09003 * 109.49635 * 178.67781 * 26 12 11 42 42 H 1.08998 * 109.58764 * 246.19774 * 27 9 7 43 43 H 1.09000 * 109.58797 * 6.48061 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4354 2.0824 -1.3982 5 1 1.4801 2.6340 0.7613 6 1 3.5774 1.4231 0.6369 7 6 2.0103 -1.2021 0.0005 8 1 1.5224 -2.1072 0.3308 9 7 3.3137 -1.2404 -0.4177 10 6 3.8173 -0.2594 -1.3887 11 6 4.4623 -1.0097 -2.5583 12 6 5.5290 -1.9657 -2.0197 13 6 6.1994 -2.6917 -3.1878 14 7 7.3002 -3.5162 -2.6832 15 6 8.0425 -4.2464 -3.5390 16 8 7.7952 -4.2247 -4.7293 17 6 9.1554 -5.0725 -3.0313 18 6 9.4444 -5.0941 -1.6645 19 6 10.4818 -5.8712 -1.1928 20 9 10.7588 -5.8967 0.1293 21 6 11.2465 -6.6245 -2.0774 22 8 12.2706 -7.3846 -1.6103 23 6 10.9652 -6.6008 -3.4394 24 9 11.7107 -7.3335 -4.2952 25 6 9.9258 -5.8300 -3.9172 26 6 4.8751 -2.9906 -1.0901 27 6 4.2351 -2.2628 0.0962 28 1 -0.4850 0.8401 -0.0004 29 1 4.5597 0.3798 -0.9108 30 1 2.9923 0.3507 -1.7564 31 1 4.9247 -0.2945 -3.2386 32 1 3.6997 -1.5782 -3.0906 33 1 6.2781 -1.3995 -1.4662 34 1 6.5886 -1.9597 -3.8954 35 1 5.4688 -3.3276 -3.6877 36 1 7.4972 -3.5338 -1.7336 37 1 8.8534 -4.5065 -0.9775 38 1 13.1197 -6.9231 -1.5773 39 1 9.7082 -5.8118 -4.9749 40 1 4.1085 -3.5403 -1.6365 41 1 5.6314 -3.6856 -0.7253 42 1 5.0116 -1.7870 0.6952 43 1 3.6846 -2.9751 0.7108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097140486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:14 Heat of formation + Delta-G solvation = -119.001418 kcal Electronic energy + Delta-G solvation = -28907.365011 eV Core-core repulsion = 24396.488759 eV Total energy + Delta-G solvation = -4510.876252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.57446 -49.54192 -40.71679 -39.39303 -38.24490 -37.21146 -35.35297 -33.10994 -31.44370 -30.99150 -30.60597 -30.34344 -27.22369 -24.79046 -23.86731 -23.48363 -22.77279 -21.39096 -21.05632 -19.64436 -19.44411 -18.72970 -18.14678 -17.08471 -16.95619 -16.77937 -16.51604 -15.87050 -15.80744 -15.73137 -15.53646 -15.23200 -15.04750 -14.36465 -14.23739 -14.07516 -13.81982 -13.61792 -13.41333 -13.15442 -12.99283 -12.90135 -12.57326 -12.26019 -12.06973 -11.84907 -11.47660 -11.45379 -10.89100 -10.71778 -10.57858 -10.43713 -10.18397 -9.93926 -9.73046 -9.54493 -9.50214 -9.46821 -9.24144 -8.65736 -7.01926 -5.97933 -3.34006 -0.18980 0.25124 2.04822 2.65853 2.95907 3.01570 3.28603 3.44805 3.45369 3.47607 3.64079 4.03144 4.07408 4.30062 4.49561 4.73724 4.85840 4.90248 4.97059 5.00684 5.02804 5.13759 5.23267 5.36820 5.39205 5.59385 5.67192 5.78996 5.82265 5.85156 5.98545 6.08828 6.11291 6.27954 6.31961 6.41044 6.56976 6.59801 6.64372 6.77498 6.90080 7.14321 7.81188 7.93017 8.29836 8.90922 9.68904 10.06279 11.18045 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023327 B = 0.002182 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.054028 B =12831.916396 C =13521.683085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.883 3.117 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.261 4.261 8 H 0.085 0.915 9 N -0.606 5.606 10 C 0.126 3.874 11 C -0.126 4.126 12 C -0.093 4.093 13 C 0.122 3.878 14 N -0.715 5.715 15 C 0.557 3.443 16 O -0.527 6.527 17 C -0.080 4.080 18 C -0.118 4.118 19 C 0.103 3.897 20 F -0.118 7.118 21 C 0.062 3.938 22 O -0.474 6.474 23 C 0.100 3.900 24 F -0.118 7.118 25 C -0.091 4.091 26 C -0.130 4.130 27 C 0.148 3.852 28 H 0.263 0.737 29 H 0.024 0.976 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.401 0.599 37 H 0.154 0.846 38 H 0.399 0.601 39 H 0.163 0.837 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.021 0.979 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.384 -10.858 -5.060 28.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.389 4.389 8 H 0.103 0.897 9 N -0.330 5.330 10 C 0.000 4.000 11 C -0.166 4.166 12 C -0.112 4.112 13 C 0.000 4.000 14 N -0.366 5.366 15 C 0.343 3.657 16 O -0.405 6.405 17 C -0.083 4.083 18 C -0.138 4.138 19 C 0.082 3.918 20 F -0.096 7.096 21 C 0.014 3.986 22 O -0.285 6.285 23 C 0.080 3.920 24 F -0.097 7.097 25 C -0.111 4.111 26 C -0.170 4.170 27 C 0.022 3.978 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.237 0.763 37 H 0.171 0.829 38 H 0.257 0.743 39 H 0.180 0.820 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.039 0.961 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 24.619 -11.200 -5.809 27.664 hybrid contribution 1.124 1.155 0.606 1.722 sum 25.743 -10.045 -5.203 28.119 Atomic orbital electron populations 1.69838 1.05747 1.26574 1.52915 1.25290 0.95228 0.97606 0.99504 0.86943 0.79978 0.84692 0.76990 1.21611 1.23182 1.19636 1.18917 0.85005 0.94753 1.40221 0.89737 1.44347 1.08638 1.33426 1.46542 1.21324 0.97266 0.92018 0.89347 1.21994 0.97414 0.98114 0.99046 1.21330 0.97589 0.96976 0.95255 1.21654 0.87661 0.93690 0.97032 1.46002 1.33351 1.46450 1.10830 1.17836 0.81797 0.79813 0.86248 1.90832 1.69629 1.64662 1.15358 1.19645 0.97352 0.99045 0.92302 1.21349 0.97104 0.99569 0.95732 1.17503 0.97407 0.98367 0.78482 1.91583 1.92934 1.95013 1.30064 1.18518 0.94239 0.96176 0.89631 1.84877 1.19116 1.38667 1.85833 1.17544 0.93451 0.95026 0.85966 1.91570 1.74708 1.74563 1.68821 1.21262 0.92731 0.94550 1.02559 1.22099 0.99355 0.97097 0.98403 1.20907 0.92442 0.91392 0.93038 0.92747 0.95788 0.90816 0.92481 0.91246 0.91045 0.91178 0.90836 0.76294 0.82882 0.74337 0.81972 0.91495 0.93091 0.96123 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.49 13.97 55.49 0.78 -26.71 16 2 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 3 Si 0.88 21.90 24.35 -169.99 -4.14 17.76 16 4 H -0.29 -6.88 6.62 56.52 0.37 -6.50 16 5 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 6 H -0.27 -6.57 6.64 56.52 0.38 -6.19 16 7 C -0.26 -7.10 10.03 -15.06 -0.15 -7.25 16 8 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 9 N -0.61 -13.67 2.77 -172.33 -0.48 -14.15 16 10 C 0.13 2.59 4.20 -3.71 -0.02 2.57 16 11 C -0.13 -2.00 5.36 -26.62 -0.14 -2.14 16 12 C -0.09 -1.20 2.19 -90.58 -0.20 -1.40 16 13 C 0.12 1.40 5.06 -4.04 -0.02 1.38 16 14 N -0.71 -6.84 5.22 -61.33 -0.32 -7.16 16 15 C 0.56 5.98 7.76 -12.44 -0.10 5.89 16 16 O -0.53 -7.51 16.34 5.29 0.09 -7.43 16 17 C -0.08 -0.67 5.87 -104.97 -0.62 -1.29 16 18 C -0.12 -0.80 9.51 -39.14 -0.37 -1.18 16 19 C 0.10 0.77 7.30 -39.38 -0.29 0.49 16 20 F -0.12 -0.99 17.10 2.25 0.04 -0.95 16 21 C 0.06 0.47 6.72 -38.95 -0.26 0.21 16 22 O -0.47 -3.29 13.21 -19.16 -0.25 -3.55 16 23 C 0.10 0.80 7.30 -39.37 -0.29 0.51 16 24 F -0.12 -1.03 17.10 2.25 0.04 -1.00 16 25 C -0.09 -0.75 9.56 -39.14 -0.37 -1.12 16 26 C -0.13 -1.82 5.25 -26.61 -0.14 -1.96 16 27 C 0.15 2.66 6.52 -3.72 -0.02 2.64 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.02 0.49 7.08 -51.93 -0.37 0.12 16 30 H 0.07 1.69 4.50 -51.93 -0.23 1.46 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.40 2.91 5.67 -40.82 -0.23 2.68 16 37 H 0.15 0.73 6.39 -52.49 -0.34 0.40 16 38 H 0.40 0.80 9.06 45.56 0.41 1.21 16 39 H 0.16 1.31 7.64 -52.49 -0.40 0.91 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.55 7.15 -51.93 -0.37 0.18 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 LS Contribution 357.07 15.07 5.38 5.38 Total: -1.00 -33.46 357.07 -6.46 -39.92 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -4.51 Total: -0.02 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -3.08 Total: -2.09 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.02 Total: -48.03 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.17 Total: -10.97 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.08 Total: -1.95 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.14 Total: 17.76 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.46 -6.46 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097140486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.080 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds